Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003446

Physical Location & Seq

Genomic Coordinates Reverse (-)

40015459 .. 40018326

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0285500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGGAGATTGGCTCTGCTTTGCTCTTATTCACGGCCATCACGGCTTACCTACTTTGGTTCACCTTCATCTCACGGTCCCTGAAGGGTCCACGTGTTTGGCCCTTACTGGGTAGCCTCCCCGGCCTGATCGAAAATTGCGACCGTTTGCATGACTGGATCTGCGATAACCTACGCGCCTGCGGCGGCACGTACCAAACCTGCATCTGCGCGGTTCCTTTTCTCGCCAAAAAGCAGGGCCTCGTGACCGTCACGTGCGACCCGAAGAATGTGGAGCACATCCTGAAGGCCCGGTTCGACAACTACCCGAAGGGCCCCACCTGGCAATCGGTGTTTCACGATCTTCTCGGCGAGGGCATATTTAACTCCGACGGCGACACGTGGCTGTTCCAGAGGAAAACTGCTGCCCTGGAGTTTACTACCAGGACGTTGCGCCAAGCCATGGCTCGGTGGGTGAGCCGAGCCATTAAGCTCAGGTTCTGCCCTATTCTCAAAGAAGCTGAGCTGAAAGGCGAGCCTGTTGATCTTCAGGACTTGCTGCTTCGGCTCACTTTTGATAATATTTGTGGCTTGGCTTTCGGGAAAGACCCGGAGACTTGCTCTGCGGGGTATCCCGACAACAGCTTCGCCTCGGCTTTCGACCGGGCCACCGAGGCGTCGCTGCAGCGGTTCATTTTGCCTGAGGTGTTGTGGAAGGTGAAGAAATGGCTCGGGCTTGGAATGGAAGTCACGCTGAGCCGGAGCCTTGTGCATATTGATGAGTATTTATCCAAAGTGATCGCTTCACGTAAGCTCGAGTTGCTGAGTCAGCAGAAGGATGGGAACCCACATGATGATCTGCTGTCAAGGTTCATGAAGAAAAAGGAGTCCTACTCGGACACCTTCCTCCAACACGTGGCGCTCAATTTCATCCTAGCCGGACGTGACACGTCATCGGTGGCGCTCAGCTGGTTCTTTTGGTTAGTGACGCTAAACCCAATTATTGAGGAGAAAATCTTGCGAGAAATCTGCACCGTTCTGATTGAGACACGTGGCGAGGATGTTACAGCATGGTTGGAAGAGTCGTTGCATTTTGAGGAACTTGACCGATTGATATACCTCAAGGCAGCATTGTCCGAAAGTCTTAGGTTGTACCCTTCCGTACCCCAAGACTCGAAGCATGTTGTGCGGGATGATGTTTTGCCCGACGGGACATTTGTGCCCGCCGGATCATCGGTCACGTACTCAATATACGCGACGGGGAGGATGAAGTCCTCATGGGGCGACGATTGCCTAGAGTTTCGTCCTGAGAGGTGGTTGTCTTCGGATGGTAAGAGATTCATAATGCATGAATACAAATATGTAGCATTCAATGCTGGTCCAAGAATCTGTCTAGGGAGGGACCTGGCGTACCTGCAAATGAAGTCGGTAGCCGCATCGGTATTGCTCCGCCACCGTCTCACGGTGGTGCCGGGCCACAAGGTGGAGCAAAAGATGTCACTGACATTGTTCATGAAGTATGGTCTGATGATGAATGTGCATCAAAGGGATTTAGGGGGTGTTTTGGGAAGGGCAAAGAGAGACAGGGAAGTACAGCTGAATGGACAAGACTCTGTTGCCGTCAAATGTAACGGTGGCGGTGAAGTGGTAGTTGGGGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med4

Protein Analysis

546

Amino Acids

61.7

Weight (kDa)

7.89

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	29 - 494	6e-64	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02850
fragaria_vesca	FvH4_7g16920 FvH4_7g16920 FvH4_7g16920 FvH4_7g16920 FvH4_7g17650 FvH4_7g17650 FvH4_7g17650
prunus_persica	Prupe.2G197600_v2.0.a1 Prupe.2G197600_v2.0.a1 Prupe.2G197600_v2.0.a1
pyrus_communis	pycom01g11270
rosa_chinensis	RchiOBHm_Chr1g0360161 RchiOBHm_Chr1g0361081
rosa_laevigata	RLG00000027749 RLG00000027825
rosa_multiflora	Rmu_sc0003333.1_g000008 Rmu_sc0007813.1_g000004 Rmu_ssc0000368.1_g000045
rosa_roxburghii	Rroxscaffold_4G00295440 Rroxscaffold_4G00296330
rosa_rugosa	Rorug01G0275400 Rorug01G0275500 Rorug01G0285400 Rorug01G0285500
rosa_samantha	Rh1AG289200 Rh1AG296800 Rh1BG254900 Rh1BG261100 Rh1CG272200 Rh1CG278400 Rh1DG284300 Rh1DG291100
rosa_wichuraiana	Rw0G002900 Rw1G025660 Rw1G026220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	206, 1398
AccB1I	GGYRCC	1 cut(s)	1444
AccB7I	CCANNNNNTGG	3 cut(s)	439, 892, 1459
AccII	CGCG	3 cut(s)	174, 209, 1232
AclWI	GGATC	2 cut(s)	164, 1213
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	3 cut(s)	101, 302, 509
AcvI	CACGTG	5 cut(s)	92, 252, 378, 892, 1028
AcyI	GRCGYC	1 cut(s)	653
AdeI	CACNNNGTG	1 cut(s)	1459
AfaI	GTAC	6 cut(s)	191, 1130, 1140, 1220, 1388, 1569
AfiI	CCNNNNNNNGG	6 cut(s)	107, 439, 444, 892, 1438, 1459
AflIII	ACRYGT	5 cut(s)	91, 375, 889, 924, 1025
AgsI	TTSAA	1 cut(s)	1348
AjiI	CACGTC	2 cut(s)	920, 927
AjnI	CCWGG	4 cut(s)	317, 405, 419, 1380
AjuI	GAANNNNNNNTTGG	1 cut(s)	1611
AleI	CACNNNNGTG	1 cut(s)	1442
AluBI	AGCT	7 cut(s)	469, 497, 502, 621, 790, 945, 1573
AluI	AGCT	7 cut(s)	469, 497, 502, 621, 790, 945, 1573
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	4 cut(s)	584, 1016, 1439, 1551
AlwI	GGATC	2 cut(s)	164, 1213
AlwNI	CAGNNNCTG	1 cut(s)	477
Ama87I	CYCGRG	2 cut(s)	707, 791
AoxI	GGCC	8 cut(s)	33, 98, 121, 235, 285, 310, 642, 1450
ApaI	GGGCCC	1 cut(s)	314
ApeKI	GCWGC	5 cut(s)	401, 535, 658, 661, 1103
ArsI	GACNNNNNNTTYG	4 cut(s)	605, 637, 1175, 1207
AspLEI	GCGC	5 cut(s)	176, 209, 432, 898, 940
AsuC2I	CCSGG	5 cut(s)	120, 289, 587, 641, 1449
AsuHPI	GGTGA	4 cut(s)	52, 463, 706, 1628
AvaI	CYCGRG	2 cut(s)	707, 791
AvaII	GGWCC	4 cut(s)	75, 86, 1355, 1378
AxyI	CCTNAGG	1 cut(s)	678
BaeGI	GKGCMC	2 cut(s)	314, 1200
BanI	GGYRCC	1 cut(s)	1444
BanII	GRGCYC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	239
BbrPI	CACGTG	5 cut(s)	92, 252, 378, 892, 1028
BbsI	GAAGAC	1 cut(s)	1290
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	388, 522, 645, 673, 1115
BccI	CCATC	3 cut(s)	44, 809, 1298
BceAI	ACGGC	4 cut(s)	48, 57, 385, 1580
BcgI	CGANNNNNNTGC	2 cut(s)	987, 1021
BciT130I	CCWGG	4 cut(s)	319, 407, 421, 1382
BciVI	GTATCC	1 cut(s)	618
BcnI	CCSGG	5 cut(s)	120, 289, 587, 641, 1449
BcoDI	GTCTC	4 cut(s)	584, 1016, 1439, 1551
BfaI	CTAG	3 cut(s)	911, 1271, 1370
BfmI	CTRYAG	1 cut(s)	659
BfoI	RGCGCY	2 cut(s)	899, 941
BfuAI	ACCTGC	2 cut(s)	206, 1398
BfuI	GTATCC	1 cut(s)	618
BglI	GCCNNNNNGGC	3 cut(s)	41, 120, 650
BisI	GCNGC	8 cut(s)	181, 184, 402, 536, 659, 662, 1104, 1410
BlpI	GCTNAGC	3 cut(s)	498, 731, 941
BlsI	GCNGC	8 cut(s)	182, 185, 403, 537, 660, 663, 1105, 1411
Bme1390I	CCNGG	9 cut(s)	120, 289, 319, 407, 421, 587, 641, 1382, 1449
Bme18I	GGWCC	4 cut(s)	75, 86, 1355, 1378
BmeT110I	CYCGRG	2 cut(s)	707, 791
BmgBI	CACGTC	2 cut(s)	920, 927
BmiI	GGNNCC	9 cut(s)	77, 87, 213, 312, 313, 740, 821, 1379, 1446
BmrFI	CCNGG	9 cut(s)	120, 289, 319, 407, 421, 587, 641, 1382, 1449
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	210, 1421, 1525
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	1290
BplI	GAGNNNNNCTC	5 cut(s)	28, 581, 613, 854, 886
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	470
Bpu1102I	GCTNAGC	3 cut(s)	498, 731, 941
BpuEI	CTTGAG	1 cut(s)	1082
BpuMI	CCSGG	5 cut(s)	120, 289, 587, 641, 1449
BsaAI	YACGTR	8 cut(s)	92, 189, 252, 378, 785, 892, 1028, 1218
BsaHI	GRCGYC	1 cut(s)	653
BsaJI	CCNNGG	5 cut(s)	118, 405, 438, 627, 648
Bsc4I	CCNNNNNNNGG	6 cut(s)	107, 439, 444, 892, 1438, 1459
Bse1I	ACTGG	2 cut(s)	111, 158
Bse21I	CCTNAGG	1 cut(s)	678
BseBI	CCWGG	4 cut(s)	319, 407, 421, 1382
BseDI	CCNNGG	5 cut(s)	118, 405, 438, 627, 648
BseGI	GGATG	7 cut(s)	276, 820, 906, 1042, 1174, 1248, 1309
BseLI	CCNNNNNNNGG	6 cut(s)	107, 439, 444, 892, 1438, 1459
BseMII	CTCAG	7 cut(s)	484, 489, 669, 722, 791, 955, 1275
BseNI	ACTGG	2 cut(s)	111, 158
BseRI	GAGGAG	1 cut(s)	998
BseSI	GKGCMC	2 cut(s)	314, 1200
BseXI	GCAGC	5 cut(s)	388, 522, 645, 673, 1115
BsgI	GTGCAG	1 cut(s)	991
Bsh1236I	CGCG	3 cut(s)	174, 209, 1232
Bsh1285I	CGRYCG	2 cut(s)	142, 640
BshFI	GGCC	8 cut(s)	35, 100, 123, 237, 287, 312, 644, 1452
BshNI	GGYRCC	1 cut(s)	1444
BsiEI	CGRYCG	2 cut(s)	142, 640
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	2 cut(s)	707, 791
BsiSI	CCGG	8 cut(s)	120, 289, 587, 640, 736, 915, 1203, 1448
BslFI	GGGAC	3 cut(s)	61, 1201, 1391
BslI	CCNNNNNNNGG	6 cut(s)	107, 439, 444, 892, 1438, 1459
BsmAI	GTCTC	4 cut(s)	584, 1016, 1439, 1551
BsmBI	CGTCTC	1 cut(s)	1439
BsmFI	GGGAC	3 cut(s)	61, 1201, 1391
BsmI	GAATGC	1 cut(s)	1343
BsnI	GGCC	8 cut(s)	35, 100, 123, 237, 287, 312, 644, 1452
BsoBI	CYCGRG	2 cut(s)	707, 791
Bsp120I	GGGCCC	1 cut(s)	310
Bsp1286I	GDGCHC	3 cut(s)	276, 314, 1200
Bsp143I	GATC	7 cut(s)	126, 156, 337, 520, 774, 832, 1205
Bsp1720I	GCTNAGC	3 cut(s)	498, 731, 941
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	8 cut(s)	35, 100, 123, 237, 287, 312, 644, 1452
BspCNI	CTCAG	7 cut(s)	483, 490, 670, 723, 792, 954, 1276
BspFNI	CGCG	3 cut(s)	174, 209, 1232
BspHI	TCATGA	2 cut(s)	849, 1488
BspLI	GGNNCC	9 cut(s)	77, 87, 213, 312, 313, 740, 821, 1379, 1446
BspMAI	CTGCAG	1 cut(s)	663
BspMI	ACCTGC	2 cut(s)	206, 1398
BspPI	GGATC	2 cut(s)	164, 1213
BspT107I	GGYRCC	1 cut(s)	1444
BsrI	ACTGG	2 cut(s)	111, 158
BssECI	CCNNGG	5 cut(s)	118, 405, 438, 627, 648
BssMI	GATC	7 cut(s)	126, 156, 337, 520, 774, 832, 1205
BssNI	GRCGYC	1 cut(s)	653
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	4 cut(s)	319, 407, 421, 1382
Bst4CI	ACNGT	7 cut(s)	75, 143, 247, 1012, 1433, 1441, 1610
Bst6I	CTCTTC	1 cut(s)	1050
BstACI	GRCGYC	1 cut(s)	653
BstAPI	GCANNNNNTGC	2 cut(s)	1162, 1349
BstBAI	YACGTR	8 cut(s)	92, 189, 252, 378, 785, 892, 1028, 1218
BstC8I	GCNNGC	3 cut(s)	178, 512, 1200
BstDEI	CTNAG	8 cut(s)	470, 498, 678, 731, 800, 941, 1121, 1284
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	7 cut(s)	276, 820, 906, 1042, 1174, 1248, 1309
BstFNI	CGCG	3 cut(s)	174, 209, 1232
BstH2I	RGCGCY	2 cut(s)	899, 941
BstHHI	GCGC	5 cut(s)	176, 209, 432, 898, 940
BstKTI	GATC	7 cut(s)	129, 159, 340, 523, 777, 835, 1208
BstMAI	GTCTC	4 cut(s)	584, 1016, 1439, 1551
BstMBI	GATC	7 cut(s)	126, 156, 337, 520, 774, 832, 1205
BstMCI	CGRYCG	2 cut(s)	142, 640
BstNI	CCWGG	4 cut(s)	319, 407, 421, 1382
BstNSI	RCATGY	1 cut(s)	1160
BstSCI	CCNGG	9 cut(s)	118, 287, 317, 405, 419, 585, 639, 1380, 1447
BstSFI	CTRYAG	1 cut(s)	659
BstSLI	GKGCMC	2 cut(s)	314, 1200
BstUI	CGCG	3 cut(s)	174, 209, 1232
BstV1I	GCAGC	5 cut(s)	388, 522, 645, 673, 1115
BstV2I	GAAGAC	1 cut(s)	1290
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	156
Bsu36I	CCTNAGG	1 cut(s)	678
BsuI	GTATCC	1 cut(s)	618
BsuRI	GGCC	8 cut(s)	35, 100, 123, 237, 287, 312, 644, 1452
BtgI	CCRYGG	1 cut(s)	438
BtrI	CACGTC	2 cut(s)	920, 927
BtsCI	GGATG	7 cut(s)	276, 820, 906, 1042, 1174, 1248, 1309
BtsIMutI	CAGTG	1 cut(s)	1475
BveI	ACCTGC	2 cut(s)	206, 1398
Cac8I	GCNNGC	3 cut(s)	178, 512, 1200
CaiI	CAGNNNCTG	1 cut(s)	477
CciI	TCATGA	2 cut(s)	849, 1488
CfoI	GCGC	5 cut(s)	176, 209, 432, 898, 940
CseI	GACGC	2 cut(s)	642, 973
Csp6I	GTAC	6 cut(s)	190, 1129, 1139, 1219, 1387, 1568
CviAII	CATG	9 cut(s)	149, 439, 827, 850, 1047, 1157, 1254, 1325, 1489
CviQI	GTAC	6 cut(s)	190, 1129, 1139, 1219, 1387, 1568
DdeI	CTNAG	8 cut(s)	470, 498, 678, 731, 800, 941, 1121, 1284
DpnI	GATC	7 cut(s)	128, 158, 339, 522, 776, 834, 1207
DpnII	GATC	7 cut(s)	126, 156, 337, 520, 774, 832, 1205
DraIII	CACNNNGTG	1 cut(s)	1459
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	1050
EciI	GGCGGA	1 cut(s)	1415
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	4 cut(s)	75, 86, 1355, 1378
Eco57I	CTGAAG	3 cut(s)	101, 302, 509
Eco72I	CACGTG	5 cut(s)	92, 252, 378, 892, 1028
Eco81I	CCTNAGG	1 cut(s)	678
Eco88I	CYCGRG	2 cut(s)	707, 791
EcoO109I	RGGNCCY	4 cut(s)	235, 310, 311, 1378
EcoRII	CCWGG	4 cut(s)	317, 405, 419, 1380
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	1326
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	1439
FaeI	CATG	9 cut(s)	152, 442, 830, 853, 1050, 1160, 1257, 1328, 1492
FaqI	GGGAC	3 cut(s)	61, 1201, 1391
FatI	CATG	9 cut(s)	148, 438, 826, 849, 1046, 1156, 1253, 1324, 1488
FauI	CCCGC	3 cut(s)	595, 1158, 1207
Fnu4HI	GCNGC	8 cut(s)	181, 184, 402, 536, 659, 662, 1104, 1410
FokI	GGATG	7 cut(s)	263, 827, 893, 1049, 1181, 1255, 1316
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	8 cut(s)	181, 184, 402, 536, 659, 662, 1104, 1410
FspBI	CTAG	3 cut(s)	911, 1271, 1370
GlaI	GCGC	5 cut(s)	175, 208, 431, 897, 939
GluI	GCNGC	8 cut(s)	181, 184, 402, 536, 659, 662, 1104, 1410
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	2 cut(s)	899, 941
HaeIII	GGCC	8 cut(s)	35, 100, 123, 237, 287, 312, 644, 1452
HapII	CCGG	8 cut(s)	120, 289, 587, 640, 736, 915, 1203, 1448
HgaI	GACGC	2 cut(s)	642, 973
HhaI	GCGC	5 cut(s)	176, 209, 432, 898, 940
Hin1I	GRCGYC	1 cut(s)	653
Hin1II	CATG	9 cut(s)	152, 442, 830, 853, 1050, 1160, 1257, 1328, 1492
Hin6I	GCGC	5 cut(s)	174, 207, 430, 896, 938
HinP1I	GCGC	5 cut(s)	174, 207, 430, 896, 938
HinfI	GANTC	7 cut(s)	802, 863, 1058, 1148, 1314, 1362, 1586
HpaII	CCGG	8 cut(s)	120, 289, 587, 640, 736, 915, 1203, 1448
HphI	GGTGA	4 cut(s)	52, 463, 706, 1628
Hpy166II	GTNNAC	3 cut(s)	60, 89, 414
Hpy188I	TCNGA	6 cut(s)	367, 874, 1017, 1114, 1303, 1503
Hpy8I	GTNNAC	3 cut(s)	60, 89, 414
Hpy99I	CGWCG	5 cut(s)	371, 658, 1187, 1237, 1265
HpyAV	CCTTC	9 cut(s)	73, 76, 277, 301, 685, 805, 889, 1143, 1539
HpyCH4III	ACNGT	7 cut(s)	75, 143, 247, 1012, 1433, 1441, 1610
HpyCH4V	TGCA	9 cut(s)	148, 201, 661, 748, 1008, 1066, 1324, 1393, 1516
HpyF3I	CTNAG	8 cut(s)	470, 498, 678, 731, 800, 941, 1121, 1284
Hsp92I	GRCGYC	1 cut(s)	653
Hsp92II	CATG	9 cut(s)	152, 442, 830, 853, 1050, 1160, 1257, 1328, 1492
HspAI	GCGC	5 cut(s)	174, 207, 430, 896, 938
Kzo9I	GATC	7 cut(s)	126, 156, 337, 520, 774, 832, 1205
LmnI	GCTCC	4 cut(s)	271, 738, 1428, 1462
Lsp1109I	GCAGC	5 cut(s)	388, 522, 645, 673, 1115
LweI	GCATC	3 cut(s)	210, 1421, 1525
MaeI	CTAG	3 cut(s)	911, 1271, 1370
MaeIII	GTNAC	9 cut(s)	241, 247, 724, 920, 961, 1039, 1213, 1473, 1604
MalI	GATC	7 cut(s)	128, 158, 339, 522, 776, 834, 1207
MboI	GATC	7 cut(s)	126, 156, 337, 520, 774, 832, 1205
MboII	GAAGA	7 cut(s)	274, 332, 515, 709, 865, 1067, 1290
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	3 cut(s)	276, 314, 1200
MluCI	AATT	3 cut(s)	133, 901, 975
MlyI	GAGTC	5 cut(s)	811, 872, 1067, 1142, 1580
MmeI	TCCRAC	3 cut(s)	390, 910, 1032
Mph1103I	ATGCAT	1 cut(s)	1326
MseI	TTAA	3 cut(s)	360, 465, 1639
MslI	CAYNNNNRTG	2 cut(s)	753, 1442
MspA1I	CMGCKG	3 cut(s)	664, 945, 1573
MspI	CCGG	8 cut(s)	120, 289, 587, 640, 736, 915, 1203, 1448
MspR9I	CCNGG	9 cut(s)	120, 289, 319, 407, 421, 587, 641, 1382, 1449
Mva1269I	GAATGC	1 cut(s)	1343
MvaI	CCWGG	4 cut(s)	319, 407, 421, 1382
MvnI	CGCG	3 cut(s)	174, 209, 1232
NciI	CCSGG	5 cut(s)	120, 289, 587, 641, 1449
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	7 cut(s)	126, 156, 337, 520, 774, 832, 1205
NlaIII	CATG	9 cut(s)	152, 442, 830, 853, 1050, 1160, 1257, 1328, 1492
NlaIV	GGNNCC	9 cut(s)	77, 87, 213, 312, 313, 740, 821, 1379, 1446
NmeAIII	GCCGAG	3 cut(s)	324, 482, 608
NmuCI	GTSAC	7 cut(s)	241, 247, 724, 920, 961, 1213, 1473
NsiI	ATGCAT	1 cut(s)	1326
NspI	RCATGY	1 cut(s)	1160
OliI	CACNNNNGTG	1 cut(s)	1442
PaeR7I	CTCGAG	1 cut(s)	791
PagI	TCATGA	2 cut(s)	849, 1488
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 257
PctI	GAATGC	1 cut(s)	1343
PfeI	GAWTC	2 cut(s)	1314, 1362
PflMI	CCANNNNNTGG	3 cut(s)	439, 892, 1459
PkrI	GCNGC	8 cut(s)	182, 185, 403, 537, 660, 663, 1105, 1411
PleI	GAGTC	5 cut(s)	810, 871, 1066, 1142, 1580
PmaCI	CACGTG	5 cut(s)	92, 252, 378, 892, 1028
PmlI	CACGTG	5 cut(s)	92, 252, 378, 892, 1028
PpsI	GAGTC	5 cut(s)	810, 871, 1066, 1142, 1580
Ppu21I	YACGTR	8 cut(s)	92, 189, 252, 378, 785, 892, 1028, 1218
PpuMI	RGGWCCY	1 cut(s)	1378
Psp5II	RGGWCCY	1 cut(s)	1378
Psp6I	CCWGG	4 cut(s)	317, 405, 419, 1380
PspCI	CACGTG	5 cut(s)	92, 252, 378, 892, 1028
PspGI	CCWGG	4 cut(s)	317, 405, 419, 1380
PspN4I	GGNNCC	9 cut(s)	77, 87, 213, 312, 313, 740, 821, 1379, 1446
PspOMI	GGGCCC	1 cut(s)	310
PspPPI	RGGWCCY	1 cut(s)	1378
PspXI	VCTCGAGB	1 cut(s)	791
PstI	CTGCAG	1 cut(s)	663
PstNI	CAGNNNCTG	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	156
PvuII	CAGCTG	2 cut(s)	945, 1573
RsaI	GTAC	6 cut(s)	191, 1130, 1140, 1220, 1388, 1569
RsaNI	GTAC	6 cut(s)	190, 1129, 1139, 1219, 1387, 1568
RseI	CAYNNNNRTG	2 cut(s)	753, 1442
SaqAI	TTAA	3 cut(s)	360, 465, 1639
SatI	GCNGC	8 cut(s)	181, 184, 402, 536, 659, 662, 1104, 1410
Sau3AI	GATC	7 cut(s)	126, 156, 337, 520, 774, 832, 1205
SchI	GAGTC	5 cut(s)	811, 872, 1067, 1142, 1580
ScrFI	CCNGG	9 cut(s)	120, 289, 319, 407, 421, 587, 641, 1382, 1449
SduI	GDGCHC	3 cut(s)	276, 314, 1200
SfaNI	GCATC	3 cut(s)	210, 1421, 1525
SfcI	CTRYAG	1 cut(s)	659
Sfr274I	CTCGAG	1 cut(s)	791
SinI	GGWCC	4 cut(s)	75, 86, 1355, 1378
SlaI	CTCGAG	1 cut(s)	791
SmiMI	CAYNNNNRTG	2 cut(s)	753, 1442
SmlI	CTYRAG	2 cut(s)	791, 1097
SmoI	CTYRAG	2 cut(s)	791, 1097
Sse9I	AATT	3 cut(s)	133, 901, 975
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	3 cut(s)	911, 1271, 1370
StyD4I	CCNGG	9 cut(s)	118, 287, 317, 405, 419, 585, 639, 1380, 1447
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	7 cut(s)	75, 143, 247, 1012, 1433, 1441, 1610
TaqI	TCGA	5 cut(s)	129, 294, 636, 792, 1151
TaqII	GACCGA	2 cut(s)	1098, 1201
TasI	AATT	3 cut(s)	133, 901, 975
TatI	WGTACW	1 cut(s)	1567
TauI	GCSGC	3 cut(s)	183, 186, 1412
TfiI	GAWTC	2 cut(s)	1314, 1362
Tru1I	TTAA	3 cut(s)	360, 465, 1639
Tru9I	TTAA	3 cut(s)	360, 465, 1639
TscAI	CASTG	1 cut(s)	1482
TseFI	GTSAC	7 cut(s)	241, 247, 724, 920, 961, 1213, 1473
TseI	GCWGC	5 cut(s)	401, 535, 658, 661, 1103
Tsp45I	GTSAC	7 cut(s)	241, 247, 724, 920, 961, 1213, 1473
TspGWI	ACGGA	1 cut(s)	1126
TspRI	CASTG	1 cut(s)	1482
Van91I	CCANNNNNTGG	3 cut(s)	439, 892, 1459
VpaK11BI	GGWCC	4 cut(s)	75, 86, 1355, 1378
XceI	RCATGY	1 cut(s)	1160
XhoI	CTCGAG	1 cut(s)	791
XspI	CTAG	3 cut(s)	911, 1271, 1370
Zsp2I	ATGCAT	1 cut(s)	1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.