FvH4_7g17650

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
14927200 .. 14929577
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17650.t3

Sequence Viewer

Length: 1206 bp
ATGCTTCAACAACAGATTGTACAATCCCCAGCTAGGCTAGGCCTATCGAACCCCAACTCACCTGCTCTTCAAAACCCTACCCCTCCAAAACTCCCTTTCCAGCAGCAGCCTTCTTCTGCTTCTTCTTCCCAGCTTCCCAATCTCTCCCCGTCGCTGGTCTCTCTCCTCTCGCCTCTCCCAAGAGCTCAATCCCTTCTAGTTCAAATGGCCTCCCTTGCATCTAAACTCTTTGAAGTTTCACCTAATCGGTCCCTTTGGCTCAATGCATTCCGCGGTTCCCTCCCAACCTTCCTTTCCTCCCAAACCCAATCTCAGTCCTCTATGCCACTTGAGAACTGTCCTTCCTCAACCAAAGATGTCCTCTCCCAGTTCACAGCTCTTCAAACCCAACTCTTTGAGACTGTTGCTGAACTCCAAGAAATTCTTGATCTTCAGGAGGCTAAGCTGAAAATTGCACGCGAAGTCCAGTCCAAGGATGCCTCACTTCTTGCCTTCTCCAAGAAACTCAAGGATATCGAGCAGGTGCTTGATAATCTTGTTGATGATTACTCAGATTTGTCCTGCCCCAAAAGAGTAAAACTGGATGACGGATCAGAAGATGATTCGTCATGCACTACTACAGTTTCATCTCAGTTGAATTTATCAGATATTTTGTCATATGCGCATCGGATAAGCTACACAACATTTGCACCACCAGAGTTTGGGGCTGGACAAGCTCCTCTTCGCGGATCACTCCCACCTGCCCCGCAGGAGGAGCACATGCGCGCTTCTCAGCTATACAATTTTGCAAACCTGGATGTTGGTTTGCCCAAGACTTTAGACAGCACGGAGAAAACAATTGAAGCAATCATGGAGTCCCCACCTCTTGCTCCAACAGAAGCCAATCAAGCTCCAGACCTTGGTGCACTTTTTCCAAATATTGCAATTCCATCTGGTTGGAAACCTGGGATGCCTGTGGAATTGCCTGCTATGCCTGTGAAGTTGCCTGCTATGCCCCCTGGATGGAAGCCTGGGGACCCAGTGCCTTTGCCGCCAGTGGGATCTCTTCCAGTTCCTAAGACCGTGGAGCAACAATCATTTAGACCTCAAGCAATGCATAAGGCACAAGAGCCAATACAAGTTCGGCATGTTATACTAGATATTCCTGAAGTCGATGATAGCGATTATAGTAGTAGTGATGAAGGAAGCTCTGAAGATGATGATTAG

Protein Analysis

402

Amino Acids

43.46

Weight (kDa)

4.64

Isoelectric Point (pI)

81.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med4 PF10018 120 - 276 3.8e-13 Vitamin-D-receptor interacting Mediator subunit 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 70, 511, 748
Acc16I TGCGCA 1 cut(s) 663
Acc36I ACCTGC 3 cut(s) 70, 511, 748
AccB7I CCANNNNNTGG 2 cut(s) 701, 899
AccII CGCG 4 cut(s) 273, 459, 726, 765
AciI CCGC 5 cut(s) 271, 273, 726, 746, 1031
AclWI GGATC 3 cut(s) 598, 736, 1048
AcsI RAATTY 2 cut(s) 420, 637
AcuI CTGAAG 2 cut(s) 416, 1167
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 9 cut(s) 33, 154, 472, 701, 725, 751, 899, 1002, 1037
AgsI TTSAA 7 cut(s) 8, 71, 203, 233, 383, 637, 842
AjnI CCWGG 4 cut(s) 792, 943, 997, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 277, 309
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
Alw21I GWGCWC 3 cut(s) 187, 759, 907
Alw26I GTCTC 2 cut(s) 163, 392
Alw44I GTGCAC 1 cut(s) 903
AlwI GGATC 3 cut(s) 598, 736, 1048
AoxI GGCC 2 cut(s) 40, 207
ApaLI GTGCAC 1 cut(s) 903
ApeKI GCWGC 2 cut(s) 103, 106
ApoI RAATTY 2 cut(s) 420, 637
AspLEI GCGC 3 cut(s) 664, 765, 767
AspS9I GGNCC 2 cut(s) 249, 1015
AsuHPI GGTGA 2 cut(s) 51, 231
AvaII GGWCC 2 cut(s) 249, 1015
BaeGI GKGCMC 1 cut(s) 907
BanII GRGCYC 1 cut(s) 187
Bbv12I GWGCWC 3 cut(s) 187, 759, 907
BbvI GCAGC 2 cut(s) 115, 118
BccI CCATC 2 cut(s) 937, 996
BciT130I CCWGG 4 cut(s) 794, 945, 999, 1011
BcoDI GTCTC 2 cut(s) 163, 392
BfaI CTAG 4 cut(s) 33, 38, 197, 1136
BfmI CTRYAG 1 cut(s) 618
BfuAI ACCTGC 3 cut(s) 70, 511, 748
BisI GCNGC 3 cut(s) 104, 107, 1031
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 3 cut(s) 105, 108, 1032
Bme1390I CCNGG 4 cut(s) 794, 945, 999, 1011
Bme18I GGWCC 2 cut(s) 249, 1015
BmgT120I GGNCC 2 cut(s) 249, 1015
BmiI GGNNCC 4 cut(s) 251, 277, 1016, 1017
BmrFI CCNGG 4 cut(s) 794, 945, 999, 1011
BmrI ACTGGG 2 cut(s) 361, 1013
BmsI GCATC 4 cut(s) 227, 466, 673, 939
BmuI ACTGGG 2 cut(s) 361, 1013
BpmI CTGGAG 1 cut(s) 876
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 3 cut(s) 350, 491, 1071
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 7 cut(s) 271, 471, 898, 944, 997, 1010, 1062
Bsc4I CCNNNNNNNGG 9 cut(s) 33, 154, 472, 701, 725, 751, 899, 1002, 1037
Bse1I ACTGG 6 cut(s) 367, 466, 585, 1019, 1034, 1049
Bse3DI GCAATG 1 cut(s) 1098
BseBI CCWGG 4 cut(s) 794, 945, 999, 1011
BseDI CCNNGG 7 cut(s) 271, 471, 898, 944, 997, 1010, 1062
BseGI GGATG 5 cut(s) 481, 589, 802, 954, 1007
BseLI CCNNNNNNNGG 9 cut(s) 33, 154, 472, 701, 725, 751, 899, 1002, 1037
BseMI GCAATG 1 cut(s) 1098
BseMII CTCAG 4 cut(s) 326, 564, 644, 785
BseNI ACTGG 6 cut(s) 367, 466, 585, 1019, 1034, 1049
BsePI GCGCGC 1 cut(s) 763
BseRI GAGGAG 3 cut(s) 155, 708, 767
BseSI GKGCMC 1 cut(s) 907
BseXI GCAGC 2 cut(s) 115, 118
BseYI CCCAGC 2 cut(s) 28, 129
Bsh1236I CGCG 4 cut(s) 273, 459, 726, 765
BshFI GGCC 2 cut(s) 42, 209
BsiHKAI GWGCWC 3 cut(s) 187, 759, 907
BslFI GGGAC 3 cut(s) 235, 841, 1028
BslI CCNNNNNNNGG 9 cut(s) 33, 154, 472, 701, 725, 751, 899, 1002, 1037
BsmAI GTCTC 2 cut(s) 163, 392
BsmFI GGGAC 3 cut(s) 235, 841, 1028
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 2 cut(s) 42, 209
Bso31I GGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 3 cut(s) 187, 759, 907
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 4 cut(s) 427, 590, 728, 1040
Bsp1720I GCTNAGC 1 cut(s) 441
BspACI CCGC 5 cut(s) 271, 273, 726, 746, 1031
BspANI GGCC 2 cut(s) 42, 209
BspCNI CTCAG 4 cut(s) 325, 563, 643, 784
BspFNI CGCG 4 cut(s) 273, 459, 726, 765
BspLI GGNNCC 4 cut(s) 251, 277, 1016, 1017
BspMI ACCTGC 3 cut(s) 70, 511, 748
BspPI GGATC 3 cut(s) 598, 736, 1048
BspQI GCTCTTC 2 cut(s) 72, 384
BspTNI GGTCTC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 1098
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 6 cut(s) 367, 466, 585, 1019, 1034, 1049
BssECI CCNNGG 7 cut(s) 271, 471, 898, 944, 997, 1010, 1062
BssHII GCGCGC 1 cut(s) 763
BssMI GATC 4 cut(s) 427, 590, 728, 1040
BssT1I CCWWGG 2 cut(s) 471, 898
Bst2UI CCWGG 4 cut(s) 794, 945, 999, 1011
Bst4CI ACNGT 4 cut(s) 338, 403, 622, 1063
Bst6I CTCTTC 4 cut(s) 72, 384, 726, 1050
BstAUI TGTACA 1 cut(s) 19
BstC8I GCNNGC 4 cut(s) 457, 765, 966, 987
BstDEI CTNAG 6 cut(s) 312, 441, 550, 630, 771, 1056
BstDSI CCRYGG 2 cut(s) 271, 1062
BstF5I GGATG 5 cut(s) 481, 589, 802, 954, 1007
BstFNI CGCG 4 cut(s) 273, 459, 726, 765
BstHHI GCGC 3 cut(s) 664, 765, 767
BstKTI GATC 4 cut(s) 430, 593, 731, 1043
BstMAI GTCTC 2 cut(s) 163, 392
BstMBI GATC 4 cut(s) 427, 590, 728, 1040
BstMWI GCNNNNNNNGC 7 cut(s) 215, 713, 754, 887, 970, 991, 1030
BstNI CCWGG 4 cut(s) 794, 945, 999, 1011
BstNSI RCATGY 2 cut(s) 763, 1130
BstSCI CCNGG 4 cut(s) 792, 943, 997, 1009
BstSFI CTRYAG 1 cut(s) 618
BstSLI GKGCMC 1 cut(s) 907
BstUI CGCG 4 cut(s) 273, 459, 726, 765
BstV1I GCAGC 2 cut(s) 115, 118
BstX2I RGATCY 1 cut(s) 1040
BstXI CCANNNNNNTGG 1 cut(s) 936
BstYI RGATCY 1 cut(s) 1040
BsuRI GGCC 2 cut(s) 42, 209
BtgI CCRYGG 2 cut(s) 271, 1062
BtsCI GGATG 5 cut(s) 481, 589, 802, 954, 1007
BtsIMutI CAGTG 2 cut(s) 1026, 1041
BveI ACCTGC 3 cut(s) 70, 511, 748
Cac8I GCNNGC 4 cut(s) 457, 765, 966, 987
CfoI GCGC 3 cut(s) 664, 765, 767
Cfr13I GGNCC 2 cut(s) 249, 1015
Cfr42I CCGCGG 1 cut(s) 274
Csp6I GTAC 1 cut(s) 20
CviAII CATG 4 cut(s) 609, 760, 850, 1127
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 6 cut(s) 312, 441, 550, 630, 771, 1056
DpnI GATC 4 cut(s) 429, 592, 730, 1042
DpnII GATC 4 cut(s) 427, 590, 728, 1040
Eam1104I CTCTTC 4 cut(s) 72, 384, 726, 1050
EarI CTCTTC 4 cut(s) 72, 384, 726, 1050
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 2 cut(s) 471, 898
Eco147I AGGCCT 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 249, 1015
Eco53kI GAGCTC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 416, 1167
EcoICRI GAGCTC 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 1015
EcoRII CCWGG 4 cut(s) 792, 943, 997, 1009
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 471, 898
EcoT22I ATGCAT 2 cut(s) 268, 1098
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 2 cut(s) 471, 898
FaeI CATG 4 cut(s) 612, 763, 853, 1130
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 705, 737
FaqI GGGAC 3 cut(s) 235, 841, 1028
FatI CATG 4 cut(s) 608, 759, 849, 1126
FauI CCCGC 1 cut(s) 753
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 104, 107, 1031
FokI GGATG 5 cut(s) 488, 596, 809, 961, 1014
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 104, 107, 1031
FspAI RTGCGCAY 1 cut(s) 663
FspBI CTAG 4 cut(s) 33, 38, 197, 1136
FspI TGCGCA 1 cut(s) 663
GlaI GCGC 3 cut(s) 663, 764, 766
GluI GCNGC 3 cut(s) 104, 107, 1031
GsaI CCCAGC 2 cut(s) 32, 133
GsuI CTGGAG 1 cut(s) 876
HaeIII GGCC 2 cut(s) 42, 209
HhaI GCGC 3 cut(s) 664, 765, 767
Hin1II CATG 4 cut(s) 612, 763, 853, 1130
Hin6I GCGC 3 cut(s) 662, 763, 765
HinP1I GCGC 3 cut(s) 662, 763, 765
HinfI GANTC 2 cut(s) 602, 854
HphI GGTGA 2 cut(s) 51, 231
Hpy166II GTNNAC 2 cut(s) 372, 905
Hpy188I TCNGA 5 cut(s) 553, 595, 646, 669, 1192
Hpy188III TCNNGA 4 cut(s) 425, 434, 893, 1145
Hpy8I GTNNAC 2 cut(s) 372, 905
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 6 cut(s) 120, 203, 298, 351, 502, 1175
HpyCH4III ACNGT 4 cut(s) 338, 403, 622, 1063
HpyCH4V TGCA 9 cut(s) 218, 266, 455, 612, 689, 788, 905, 923, 1096
HpyF10VI GCNNNNNNNGC 7 cut(s) 215, 713, 754, 887, 970, 991, 1030
HpyF3I CTNAG 6 cut(s) 312, 441, 550, 630, 771, 1056
Hsp92II CATG 4 cut(s) 612, 763, 853, 1130
HspAI GCGC 3 cut(s) 662, 763, 765
KflI GGGWCCC 1 cut(s) 1015
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 4 cut(s) 427, 590, 728, 1040
LguI GCTCTTC 2 cut(s) 72, 384
LmnI GCTCC 5 cut(s) 721, 754, 874, 895, 1066
Lsp1109I GCAGC 2 cut(s) 115, 118
LweI GCATC 4 cut(s) 227, 466, 673, 939
MaeI CTAG 4 cut(s) 33, 38, 197, 1136
MalI GATC 4 cut(s) 429, 592, 730, 1042
MboI GATC 4 cut(s) 427, 590, 728, 1040
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 1 cut(s) 1040
MhlI GDGCHC 3 cut(s) 187, 759, 907
MluCI AATT 7 cut(s) 420, 450, 637, 781, 837, 924, 959
MlyI GAGTC 1 cut(s) 863
MmeI TCCRAC 2 cut(s) 896, 917
Mph1103I ATGCAT 2 cut(s) 268, 1098
MspA1I CMGCKG 1 cut(s) 273
MspR9I CCNGG 4 cut(s) 794, 945, 999, 1011
MunI CAATTG 1 cut(s) 837
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 4 cut(s) 794, 945, 999, 1011
MvnI CGCG 4 cut(s) 273, 459, 726, 765
MwoI GCNNNNNNNGC 7 cut(s) 215, 713, 754, 887, 970, 991, 1030
NdeI CATATG 1 cut(s) 658
NdeII GATC 4 cut(s) 427, 590, 728, 1040
NlaIII CATG 4 cut(s) 612, 763, 853, 1130
NlaIV GGNNCC 4 cut(s) 251, 277, 1016, 1017
NsbI TGCGCA 1 cut(s) 663
NsiI ATGCAT 2 cut(s) 268, 1098
NspI RCATGY 2 cut(s) 763, 1130
PaqCI CACCTGC 3 cut(s) 70, 511, 748
PauI GCGCGC 1 cut(s) 763
PceI AGGCCT 1 cut(s) 42
PciSI GCTCTTC 2 cut(s) 72, 384
PcsI WCGNNNNNNNCGW 1 cut(s) 1158
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 602
PflMI CCANNNNNTGG 2 cut(s) 701, 899
PkrI GCNGC 3 cut(s) 105, 108, 1032
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
PpuMI RGGWCCY 1 cut(s) 1015
Psp124BI GAGCTC 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 1015
Psp6I CCWGG 4 cut(s) 792, 943, 997, 1009
PspFI CCCAGC 2 cut(s) 28, 129
PspGI CCWGG 4 cut(s) 792, 943, 997, 1009
PspN4I GGNNCC 4 cut(s) 251, 277, 1016, 1017
PspPI GGNCC 2 cut(s) 249, 1015
PspPPI RGGWCCY 1 cut(s) 1015
PsuI RGATCY 1 cut(s) 1040
PteI GCGCGC 1 cut(s) 763
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SacI GAGCTC 1 cut(s) 187
SacII CCGCGG 1 cut(s) 274
SapI GCTCTTC 2 cut(s) 72, 384
SatI GCNGC 3 cut(s) 104, 107, 1031
Sau3AI GATC 4 cut(s) 427, 590, 728, 1040
Sau96I GGNCC 2 cut(s) 249, 1015
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 4 cut(s) 794, 945, 999, 1011
SduI GDGCHC 3 cut(s) 187, 759, 907
SfaNI GCATC 4 cut(s) 227, 466, 673, 939
SfcI CTRYAG 1 cut(s) 618
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 2 cut(s) 249, 1015
SmlI CTYRAG 3 cut(s) 329, 506, 1086
SmoI CTYRAG 3 cut(s) 329, 506, 1086
Sse9I AATT 7 cut(s) 420, 450, 637, 781, 837, 924, 959
SseBI AGGCCT 1 cut(s) 42
SsiI CCGC 5 cut(s) 271, 273, 726, 746, 1031
SspI AATATT 1 cut(s) 919
SspMI CTAG 4 cut(s) 33, 38, 197, 1136
SstI GAGCTC 1 cut(s) 187
StuI AGGCCT 1 cut(s) 42
StyD4I CCNGG 4 cut(s) 792, 943, 997, 1009
StyI CCWWGG 2 cut(s) 471, 898
TaaI ACNGT 4 cut(s) 338, 403, 622, 1063
TaqI TCGA 3 cut(s) 47, 516, 1152
TaqII GACCGA 1 cut(s) 237
TasI AATT 7 cut(s) 420, 450, 637, 781, 837, 924, 959
TatI WGTACW 1 cut(s) 19
TauI GCSGC 1 cut(s) 1033
TfiI GAWTC 1 cut(s) 602
TscAI CASTG 2 cut(s) 1026, 1041
TseI GCWGC 2 cut(s) 103, 106
TspDTI ATGAA 2 cut(s) 615, 1194
TspGWI ACGGA 2 cut(s) 603, 842
TspRI CASTG 2 cut(s) 1026, 1041
Van91I CCANNNNNTGG 2 cut(s) 701, 899
VneI GTGCAC 1 cut(s) 903
VpaK11BI GGWCC 2 cut(s) 249, 1015
XapI RAATTY 2 cut(s) 420, 637
XceI RCATGY 2 cut(s) 763, 1130
XspI CTAG 4 cut(s) 33, 38, 197, 1136
Zsp2I ATGCAT 2 cut(s) 268, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.