Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003446

Physical Location & Seq

Genomic Coordinates Reverse (-)

15703334 .. 15704533

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAACTCCAACATGCCTCAACACCAAATTGTGCAATCCCCAGCTAGGCTAGGCCTGGCAAATCCTACTTCACCATCTCTTCAAAACCCTAATCCTCCAAAACCCCCTTCACAGCAATCCAATGCCTCTTCGACTCTTATCTCTCTTCTCCCACCCCTCCCTAGAGCACAGTCCCTTCTTGTCCAAATGGCCTCTCTAGCCTCCAAGCTCTTTGAAGTCTCACCTAATCGGTCCCTCTGGCTCAATGCATTCCGTGGCTCGCTCCCAACCTTTCTGCCTTCCCAAAACCAATCAGTGCCTATAACCCCACCTGACTCCAATCCTTCCTCCACCAAAGATATTCTGTCCCAGTTCACAGTGCTTCAAACCCAACTCTTTCAGGCTGTTGCCGAGCTGCAGGAAATTCTTGATCTTCAGGACTCTAAGCTGAAAATTGCACAGGAAATCTGGTCCAAGGATGCTGCCCTTCTTGCCTTTTCCAAGAAACTCAAGGATGCCGAGCAGATTCTTGATAACCTCGTTGATGACTACTCTGACTATCGCCGCCCCAAACGGCTAAAACTGGAGGATGACGATGCAGAAGATGAGGAATCTTCATGCACTACTACTGTTACATCTAAGTTGAAGTTATCTGATATTTTGTCATATGCCCACCGGATAAGCTACACAACCTTTGCACCGCCAGATTTTGGTGCCGGGCAAGCTCCTCTTCGTGGGGCACTACCACCTGCACCACAGGATGAGCAAATGCGTGCTTCTCAGCTATACCATTTTGCAAACCTTGATGTGGGATTACCTAAGACAGTTGAGAGCGAGGAGAAAACAATTGAAACAATTATTGAGCCCCCACCTCCACAACCAACAGAATACAATCAACATGCTGGCATGGTTCCATTTCAGGGTATACTTCCTCCAAATTTCACAATTCCGTCAGGTTGGAAACCAGGAATGCCTGTGGAATTGCCAACTGATTTACCTGTTCCCCCACCTGGATGGAAGCCTGGGGACCCAGTGCCTTTGCCCCCATTGGACAATCTCCCCATACCTTTACCCCCACAAACACGGACTAATGTTCCTCAAGGAATACATAAACCACCAGAGACAATACAGGTTCAGCATGTTCAGCTCGATATTCTGGATCAAGATGATGATAGTAGTGATTATAGTAGCGACGAGGGAAGCTCTGAAGATGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med4

Protein Analysis

400

Amino Acids

43.8

Weight (kDa)

4.57

Isoelectric Point (pI)

71.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med4	PF10018	114 - 276	1.2e-11	Vitamin-D-receptor interacting Mediator subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02850
fragaria_vesca	FvH4_7g16920 FvH4_7g16920 FvH4_7g16920 FvH4_7g16920 FvH4_7g17650 FvH4_7g17650 FvH4_7g17650
prunus_persica	Prupe.2G197600_v2.0.a1 Prupe.2G197600_v2.0.a1 Prupe.2G197600_v2.0.a1
pyrus_communis	pycom01g11270
rosa_chinensis	RchiOBHm_Chr1g0360161 RchiOBHm_Chr1g0361081
rosa_laevigata	RLG00000027749 RLG00000027825
rosa_multiflora	Rmu_sc0003333.1_g000008 Rmu_sc0007813.1_g000004 Rmu_ssc0000368.1_g000045
rosa_roxburghii	Rroxscaffold_4G00295440 Rroxscaffold_4G00296330
rosa_rugosa	Rorug01G0275400 Rorug01G0275500 Rorug01G0285400 Rorug01G0285500
rosa_samantha	Rh1AG289200 Rh1AG296800 Rh1BG254900 Rh1BG261100 Rh1CG272200 Rh1CG278400 Rh1DG284300 Rh1DG291100
rosa_wichuraiana	Rw0G002900 Rw1G025660 Rw1G026220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	736
Acc36I	ACCTGC	1 cut(s)	736
AccB1I	GGYRCC	1 cut(s)	692
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	904
AciI	CCGC	2 cut(s)	544, 680
AclWI	GGATC	1 cut(s)	1146
AcsI	RAATTY	2 cut(s)	402, 916
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	6 cut(s)	45, 689, 713, 787, 899, 989
AgsI	TTSAA	5 cut(s)	83, 215, 365, 625, 830
AjnI	CCWGG	4 cut(s)	54, 943, 988, 1000
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AluBI	AGCT	9 cut(s)	44, 208, 394, 427, 663, 704, 763, 1126, 1182
AluI	AGCT	9 cut(s)	44, 208, 394, 427, 663, 704, 763, 1126, 1182
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	223, 1094
AlwI	GGATC	1 cut(s)	1146
AoxI	GGCC	2 cut(s)	52, 189
ApeKI	GCWGC	2 cut(s)	394, 461
ApoI	RAATTY	2 cut(s)	402, 916
AspS9I	GGNCC	3 cut(s)	231, 450, 1006
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	2 cut(s)	63, 213
AvaII	GGWCC	3 cut(s)	231, 450, 1006
BaeGI	GKGCMC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	381, 448
BccI	CCATC	2 cut(s)	82, 987
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	4 cut(s)	56, 945, 990, 1002
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	223, 1094
BfaI	CTAG	4 cut(s)	45, 50, 162, 197
BfmI	CTRYAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	736
BisI	GCNGC	3 cut(s)	395, 462, 544
BlsI	GCNGC	3 cut(s)	396, 463, 545
Bme1390I	CCNGG	5 cut(s)	56, 697, 945, 990, 1002
Bme18I	GGWCC	3 cut(s)	231, 450, 1006
BmgT120I	GGNCC	3 cut(s)	231, 450, 1006
BmiI	GGNNCC	5 cut(s)	233, 694, 891, 1007, 1008
BmrFI	CCNGG	5 cut(s)	56, 697, 945, 990, 1002
BmrI	ACTGGG	2 cut(s)	343, 1004
BmsI	GCATC	3 cut(s)	448, 484, 565
BmuI	ACTGGG	2 cut(s)	343, 1004
BplI	GAGNNNNNCTC	2 cut(s)	1166, 1198
BpmI	CTGGAG	1 cut(s)	584
BpuEI	CTTGAG	2 cut(s)	473, 1062
BpuMI	CCSGG	1 cut(s)	697
BsaJI	CCNNGG	3 cut(s)	253, 453, 1001
BsaWI	WCCGGW	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 689, 713, 787, 899, 989
Bse1I	ACTGG	3 cut(s)	349, 567, 1010
BseBI	CCWGG	4 cut(s)	56, 945, 990, 1002
BseDI	CCNNGG	3 cut(s)	253, 453, 1001
BseGI	GGATG	5 cut(s)	463, 499, 574, 745, 998
BseLI	CCNNNNNNNGG	6 cut(s)	45, 689, 713, 787, 899, 989
BseMII	CTCAG	1 cut(s)	773
BseNI	ACTGG	3 cut(s)	349, 567, 1010
BseRI	GAGGAG	2 cut(s)	696, 830
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	2 cut(s)	381, 448
BseYI	CCCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	2 cut(s)	54, 191
BshNI	GGYRCC	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	655, 696
BslFI	GGGAC	4 cut(s)	157, 217, 331, 1019
BslI	CCNNNNNNNGG	6 cut(s)	45, 689, 713, 787, 899, 989
BsmAI	GTCTC	2 cut(s)	223, 1094
BsmFI	GGGAC	4 cut(s)	157, 217, 331, 1019
BsmI	GAATGC	2 cut(s)	248, 954
BsnI	GGCC	2 cut(s)	54, 191
Bsp1286I	GDGCHC	3 cut(s)	169, 721, 846
Bsp143I	GATC	2 cut(s)	409, 1138
BspACI	CCGC	2 cut(s)	544, 680
BspANI	GGCC	2 cut(s)	54, 191
BspCNI	CTCAG	1 cut(s)	772
BspLI	GGNNCC	5 cut(s)	233, 694, 891, 1007, 1008
BspMAI	CTGCAG	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	736
BspPI	GGATC	1 cut(s)	1146
BspT107I	GGYRCC	1 cut(s)	692
BsrI	ACTGG	3 cut(s)	349, 567, 1010
BssECI	CCNNGG	3 cut(s)	253, 453, 1001
BssMI	GATC	2 cut(s)	409, 1138
BssNAI	GTATAC	1 cut(s)	905
BssT1I	CCWWGG	1 cut(s)	453
Bst1107I	GTATAC	1 cut(s)	905
Bst2UI	CCWGG	4 cut(s)	56, 945, 990, 1002
Bst4CI	ACNGT	4 cut(s)	171, 358, 610, 805
Bst6I	CTCTTC	4 cut(s)	84, 133, 150, 714
BstC8I	GCNNGC	4 cut(s)	260, 702, 753, 883
BstDEI	CTNAG	4 cut(s)	423, 618, 759, 798
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	5 cut(s)	463, 499, 574, 745, 998
BstKTI	GATC	2 cut(s)	412, 1141
BstMAI	GTCTC	2 cut(s)	223, 1094
BstMBI	GATC	2 cut(s)	409, 1138
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 470, 701, 1123
BstNI	CCWGG	4 cut(s)	56, 945, 990, 1002
BstNSI	RCATGY	3 cut(s)	16, 881, 1121
BstSCI	CCNGG	5 cut(s)	54, 695, 943, 988, 1000
BstSFI	CTRYAG	1 cut(s)	395
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	2 cut(s)	381, 448
BstXI	CCANNNNNNTGG	1 cut(s)	993
BstZ17I	GTATAC	1 cut(s)	905
BsuRI	GGCC	2 cut(s)	54, 191
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	5 cut(s)	463, 499, 574, 745, 998
BtsIMutI	CAGTG	3 cut(s)	300, 363, 1017
BveI	ACCTGC	1 cut(s)	736
Cac8I	GCNNGC	4 cut(s)	260, 702, 753, 883
Cfr13I	GGNCC	3 cut(s)	231, 450, 1006
CviAII	CATG	5 cut(s)	13, 597, 878, 886, 1118
DdeI	CTNAG	4 cut(s)	423, 618, 759, 798
DpnI	GATC	2 cut(s)	411, 1140
DpnII	GATC	2 cut(s)	409, 1138
Eam1104I	CTCTTC	4 cut(s)	84, 133, 150, 714
EarI	CTCTTC	4 cut(s)	84, 133, 150, 714
Eco130I	CCWWGG	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	846
Eco47I	GGWCC	3 cut(s)	231, 450, 1006
Eco57I	CTGAAG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	1006
EcoRII	CCWGG	4 cut(s)	54, 943, 988, 1000
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	5 cut(s)	16, 600, 881, 889, 1121
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	4 cut(s)	157, 217, 331, 1019
FatI	CATG	5 cut(s)	12, 596, 877, 885, 1117
FauNDI	CATATG	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	904
Fnu4HI	GCNGC	3 cut(s)	395, 462, 544
FokI	GGATG	5 cut(s)	470, 506, 581, 752, 1005
FriOI	GRGCYC	1 cut(s)	846
Fsp4HI	GCNGC	3 cut(s)	395, 462, 544
FspBI	CTAG	4 cut(s)	45, 50, 162, 197
GluI	GCNGC	3 cut(s)	395, 462, 544
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	54, 191
HapII	CCGG	2 cut(s)	655, 696
Hin1II	CATG	5 cut(s)	16, 600, 881, 889, 1121
HinfI	GANTC	5 cut(s)	133, 314, 419, 505, 590
HpaII	CCGG	2 cut(s)	655, 696
HphI	GGTGA	2 cut(s)	63, 213
Hpy166II	GTNNAC	2 cut(s)	354, 905
Hpy188I	TCNGA	3 cut(s)	535, 634, 1186
Hpy188III	TCNNGA	5 cut(s)	407, 416, 509, 1136, 1142
Hpy8I	GTNNAC	2 cut(s)	354, 905
Hpy99I	CGWCG	1 cut(s)	1175
HpyAV	CCTTC	5 cut(s)	117, 185, 288, 333, 476
HpyCH4III	ACNGT	4 cut(s)	171, 358, 610, 805
HpyCH4V	TGCA	9 cut(s)	34, 248, 397, 437, 578, 600, 677, 731, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 470, 701, 1123
HpyF3I	CTNAG	4 cut(s)	423, 618, 759, 798
Hsp92II	CATG	5 cut(s)	16, 600, 881, 889, 1121
KflI	GGGWCCC	1 cut(s)	1006
Kzo9I	GATC	2 cut(s)	409, 1138
LmnI	GCTCC	2 cut(s)	267, 709
Lsp1109I	GCAGC	2 cut(s)	381, 448
LweI	GCATC	3 cut(s)	448, 484, 565
MaeI	CTAG	4 cut(s)	45, 50, 162, 197
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	2 cut(s)	411, 1140
MboI	GATC	2 cut(s)	409, 1138
MboII	GAAGA	8 cut(s)	71, 120, 137, 404, 585, 593, 701, 1199
MfeI	CAATTG	1 cut(s)	825
MhlI	GDGCHC	3 cut(s)	169, 721, 846
MluCI	AATT	8 cut(s)	27, 402, 432, 825, 834, 916, 924, 959
MlyI	GAGTC	3 cut(s)	127, 308, 413
MmeI	TCCRAC	2 cut(s)	33, 917
Mph1103I	ATGCAT	1 cut(s)	250
MslI	CAYNNNNRTG	1 cut(s)	991
MspI	CCGG	2 cut(s)	655, 696
MspR9I	CCNGG	5 cut(s)	56, 697, 945, 990, 1002
MunI	CAATTG	1 cut(s)	825
Mva1269I	GAATGC	2 cut(s)	248, 954
MvaI	CCWGG	4 cut(s)	56, 945, 990, 1002
MwoI	GCNNNNNNNGC	4 cut(s)	197, 470, 701, 1123
NciI	CCSGG	1 cut(s)	697
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	2 cut(s)	409, 1138
NlaIII	CATG	5 cut(s)	16, 600, 881, 889, 1121
NlaIV	GGNNCC	5 cut(s)	233, 694, 891, 1007, 1008
NmeAIII	GCCGAG	2 cut(s)	415, 523
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	3 cut(s)	16, 881, 1121
PaqCI	CACCTGC	1 cut(s)	736
PceI	AGGCCT	1 cut(s)	54
PctI	GAATGC	2 cut(s)	248, 954
PfeI	GAWTC	2 cut(s)	505, 590
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	3 cut(s)	396, 463, 545
PleI	GAGTC	3 cut(s)	127, 308, 413
PpsI	GAGTC	3 cut(s)	127, 308, 413
PpuMI	RGGWCCY	1 cut(s)	1006
Psp5II	RGGWCCY	1 cut(s)	1006
Psp6I	CCWGG	4 cut(s)	54, 943, 988, 1000
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	4 cut(s)	54, 943, 988, 1000
PspN4I	GGNNCC	5 cut(s)	233, 694, 891, 1007, 1008
PspPI	GGNCC	3 cut(s)	231, 450, 1006
PspPPI	RGGWCCY	1 cut(s)	1006
PstI	CTGCAG	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	991
SatI	GCNGC	3 cut(s)	395, 462, 544
Sau3AI	GATC	2 cut(s)	409, 1138
Sau96I	GGNCC	3 cut(s)	231, 450, 1006
SchI	GAGTC	3 cut(s)	127, 308, 413
ScrFI	CCNGG	5 cut(s)	56, 697, 945, 990, 1002
SduI	GDGCHC	3 cut(s)	169, 721, 846
SfaNI	GCATC	3 cut(s)	448, 484, 565
SfcI	CTRYAG	1 cut(s)	395
SinI	GGWCC	3 cut(s)	231, 450, 1006
SmiMI	CAYNNNNRTG	1 cut(s)	991
SmlI	CTYRAG	2 cut(s)	488, 1077
SmoI	CTYRAG	2 cut(s)	488, 1077
Sse9I	AATT	8 cut(s)	27, 402, 432, 825, 834, 916, 924, 959
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	2 cut(s)	544, 680
SspMI	CTAG	4 cut(s)	45, 50, 162, 197
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	5 cut(s)	54, 695, 943, 988, 1000
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	4 cut(s)	171, 358, 610, 805
TaqI	TCGA	2 cut(s)	131, 1128
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	8 cut(s)	27, 402, 432, 825, 834, 916, 924, 959
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	505, 590
TscAI	CASTG	3 cut(s)	300, 363, 1017
TseI	GCWGC	2 cut(s)	394, 461
TspDTI	ATGAA	2 cut(s)	17, 585
TspGWI	ACGGA	3 cut(s)	242, 918, 1078
TspRI	CASTG	3 cut(s)	300, 363, 1017
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	3 cut(s)	231, 450, 1006
XapI	RAATTY	2 cut(s)	402, 916
XceI	RCATGY	3 cut(s)	16, 881, 1121
XmiI	GTMKAC	1 cut(s)	904
XspI	CTAG	4 cut(s)	45, 50, 162, 197
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.