AT5G03120

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
733887 .. 735381
1495 bp
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UTR
Exon/CDS
Intron
AT5G03120.1

Sequence Viewer

Length: 231 bp
ATGAAATCGACCGTCATGATGATTTTCCTCATTATCTACCTCCTCATCGCCGTGCCTTGCTTCGCTAAAGGATCGGAGCAAACGGATTCAGAGGTGTACGAGATCGATTACAGGGGACCAGAGACTCATAACTCTAGACCTCCACCGGAAACTATGCACGGCAAGCCACCGTACATCCACCATAATACCTCCGCCGCTGGGCTCGGTGCTCATGTAGGAGGAAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.35

Weight (kDa)

6.49

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 195
AclWI GGATC 1 cut(s) 79
AfaI GTAC 2 cut(s) 98, 173
AfiI CCNNNNNNNGG 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 211
BceAI ACGGC 2 cut(s) 35, 175
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 135, 229
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 105
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 32
BseYI CCCAGC 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 12
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 204, 211
Bsp143I GATC 2 cut(s) 71, 102
BspACI CCGC 2 cut(s) 192, 195
BspDI ATCGAT 1 cut(s) 105
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 79
BssMI GATC 2 cut(s) 71, 102
Bst4CI ACNGT 2 cut(s) 13, 171
BstC8I GCNNGC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 2 cut(s) 74, 105
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 71, 102
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 105
BsuTUI ATCGAT 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 164
CciI TCATGA 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 97, 172
CviAII CATG 2 cut(s) 16, 212
CviJI RGCY 2 cut(s) 166, 202
CviKI_1 RGCY 2 cut(s) 166, 202
CviQI GTAC 2 cut(s) 97, 172
DpnI GATC 2 cut(s) 73, 104
DpnII GATC 2 cut(s) 71, 102
EciI GGCGGA 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 2 cut(s) 19, 215
FaiI YATR 5 cut(s) 17, 129, 155, 183, 213
FaqI GGGAC 1 cut(s) 129
FatI CATG 2 cut(s) 15, 211
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 135, 229
GluI GCNGC 1 cut(s) 195
GsaI CCCAGC 1 cut(s) 201
HapII CCGG 1 cut(s) 146
Hin1II CATG 2 cut(s) 19, 215
HinfI GANTC 2 cut(s) 86, 124
HpaII CCGG 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 76, 91
Hpy188III TCNNGA 2 cut(s) 16, 135
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 13, 171
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
Hsp92II CATG 2 cut(s) 19, 215
Kzo9I GATC 2 cut(s) 71, 102
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 97, 132, 159, 183
MaeI CTAG 2 cut(s) 135, 229
MalI GATC 2 cut(s) 73, 104
MboI GATC 2 cut(s) 71, 102
MhlI GDGCHC 2 cut(s) 204, 211
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 7 cut(s) 38, 50, 53, 85, 150, 199, 212
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 2 cut(s) 71, 102
NlaIII CATG 2 cut(s) 19, 215
NlaIV GGNNCC 1 cut(s) 117
PagI TCATGA 1 cut(s) 15
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
RsaI GTAC 2 cut(s) 98, 173
RsaNI GTAC 2 cut(s) 97, 172
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 71, 102
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 2 cut(s) 204, 211
SetI ASST 4 cut(s) 42, 96, 142, 191
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 50
SsiI CCGC 2 cut(s) 192, 195
SspMI CTAG 2 cut(s) 135, 229
TaaI ACNGT 2 cut(s) 13, 171
TaqI TCGA 2 cut(s) 8, 105
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 134
XspI CTAG 2 cut(s) 135, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.