Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010135

Physical Location & Seq

Genomic Coordinates Forward (+)

14643260 .. 14647493

Gene Structure 4234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCTAATCTATCTTTGCCTCGCTTCTTCCGTCCTTATTCTTGGCATGCCATGGAGCTCATGAAGTACTCTACCTTCATCACCATCTTTCTTCTCTTCCTGCTTACCACACCTTACTTTGCAAGAGGTGGAGAAATATCAGAGACGGTGGATAGTACTACTGAGGTTTATGAAATCGATTACAGAGGTCCAGAGACTCACTCATCAATTCCCCCGCCTGGTCACTTACATGGGAAGAAGAAGCCTTTGCCTAATGTGATCCACAAAGAAAGCGTCATTGGGAGTCCCAAATCTAAGAGGTTCAGGGGTGGCAATTATAACACGGGAAGAAAGCTAAAAAAGAGAGGATACGTACACGTGGCGGGATCCAAAGAGGGTACTAGATATAAAGTTTGCGGCACAGGACCATCTCCTGTACCCCCCCCCAAAACGCGGTTTGACGTGGCAGAGACCGCGTCGACACACCTCCAAAGGACTCCAACACGAATCCAAAACAACCAAACCTCTCTCGCTTTTCTCTCCTCTTTTCAATTCTTCCATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.52

Weight (kDa)

10.04

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03120 AT5G03120
fragaria_vesca	FvH4_6g15530
malus_domestica	MD04G1102400.v1.1 MD12G1122100.v1.1
prunus_persica	Prupe.6G240500_v2.0.a1 Prupe.6G240500_v2.0.a1
pyrus_communis	pycom04g09770 pycom12g12110
rosa_chinensis	RchiOBHm_Chr3g0469031
rosa_laevigata	RLG00000024389
rosa_multiflora	Rmu_sc0000326.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412310
rosa_rugosa	Rorug03G0098600 Rorug03G0098700 Rorug03G0098700
rosa_samantha	Rh3AG148000 Rh3BG170800 Rh3DG204300
rosa_wichuraiana	Rw0G010960 Rw3G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	458
AccII	CGCG	2 cut(s)	433, 455
AciI	CCGC	5 cut(s)	215, 362, 396, 433, 453
AclWI	GGATC	3 cut(s)	253, 360, 373
AcvI	CACGTG	1 cut(s)	358
AfaI	GTAC	5 cut(s)	68, 157, 354, 379, 417
AfiI	CCNNNNNNNGG	2 cut(s)	218, 432
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	530
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	2 cut(s)	58, 334
AluI	AGCT	2 cut(s)	58, 334
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	137, 188, 443
AlwI	GGATC	3 cut(s)	253, 360, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspS9I	GGNCC	2 cut(s)	188, 404
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	188, 404
BamHI	GGATCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	60
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BbrPI	CACGTG	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	2 cut(s)	92, 415
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	341
BcoDI	GTCTC	3 cut(s)	137, 188, 443
BfaI	CTAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	341
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
BmcAI	AGTACT	2 cut(s)	68, 157
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	2 cut(s)	188, 404
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	188, 404
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
Bsa29I	ATCGAT	1 cut(s)	177
BsaAI	YACGTR	2 cut(s)	352, 358
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 432
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	218, 432
BseMII	CTCAG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	511
Bsh1236I	CGCG	2 cut(s)	433, 455
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	218, 432
BsmAI	GTCTC	3 cut(s)	137, 188, 443
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	258, 365
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	5 cut(s)	215, 362, 396, 433, 453
BspCNI	CTCAG	1 cut(s)	154
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	2 cut(s)	433, 455
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	3 cut(s)	253, 360, 373
BspTNI	GGTCTC	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	258, 365
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	101
BstBAI	YACGTR	2 cut(s)	352, 358
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	162, 294
BstDSI	CCRYGG	1 cut(s)	51
BstFNI	CGCG	2 cut(s)	433, 455
BstKTI	GATC	2 cut(s)	261, 368
BstMAI	GTCTC	3 cut(s)	137, 188, 443
BstMBI	GATC	2 cut(s)	258, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	217
BstSNI	TACGTA	1 cut(s)	352
BstUI	CGCG	2 cut(s)	433, 455
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	188, 404
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	2 cut(s)	262, 444
Csp6I	GTAC	5 cut(s)	67, 156, 353, 378, 416
CviAII	CATG	4 cut(s)	47, 52, 61, 230
CviJI	RGCY	3 cut(s)	58, 244, 334
CviKI_1	RGCY	3 cut(s)	58, 244, 334
CviQI	GTAC	5 cut(s)	67, 156, 353, 378, 416
DdeI	CTNAG	2 cut(s)	162, 294
DpnI	GATC	2 cut(s)	260, 367
DpnII	GATC	2 cut(s)	258, 365
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	58
Eco105I	TACGTA	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	2 cut(s)	188, 404
Eco53kI	GAGCTC	1 cut(s)	58
Eco72I	CACGTG	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	4 cut(s)	50, 55, 64, 233
FaiI	YATR	7 cut(s)	48, 53, 62, 171, 231, 318, 387
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	4 cut(s)	46, 51, 60, 229
FauI	CCCGC	2 cut(s)	222, 355
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	1 cut(s)	397
HgaI	GACGC	2 cut(s)	262, 444
Hin1II	CATG	4 cut(s)	50, 55, 64, 233
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	4 cut(s)	196, 283, 475, 486
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	355, 459
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	61, 191
Hpy8I	GTNNAC	2 cut(s)	355, 459
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	3 cut(s)	351, 357, 441
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	162, 294
HpySE526I	ACGT	3 cut(s)	351, 357, 441
Hsp92II	CATG	4 cut(s)	50, 55, 64, 233
Kzo9I	GATC	2 cut(s)	258, 365
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	7 cut(s)	113, 204, 204, 231, 289, 387, 426
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	3 cut(s)	351, 357, 441
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	260, 367
MboI	GATC	2 cut(s)	258, 365
MboII	GAAGA	7 cut(s)	19, 83, 88, 247, 250, 339, 526
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	3 cut(s)	207, 313, 530
MlyI	GAGTC	3 cut(s)	190, 292, 469
MmeI	TCCRAC	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	2 cut(s)	433, 455
MwoI	GCNNNNNNNGC	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	258, 365
NlaIII	CATG	4 cut(s)	50, 55, 64, 233
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PagI	TCATGA	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	486
PflFI	GACNNNGTC	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	398
PleI	GAGTC	3 cut(s)	190, 291, 469
PmaCI	CACGTG	1 cut(s)	358
PmlI	CACGTG	1 cut(s)	358
PpsI	GAGTC	3 cut(s)	190, 291, 469
Ppu21I	YACGTR	2 cut(s)	352, 358
PsiI	TTATAA	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	217
PspCI	CACGTG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	2 cut(s)	188, 404
PsuI	RGATCY	1 cut(s)	365
PsyI	GACNNNGTC	1 cut(s)	454
RsaI	GTAC	5 cut(s)	68, 157, 354, 379, 417
RsaNI	GTAC	5 cut(s)	67, 156, 353, 378, 416
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	60
SalI	GTCGAC	1 cut(s)	457
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	2 cut(s)	258, 365
Sau96I	GGNCC	2 cut(s)	188, 404
ScaI	AGTACT	2 cut(s)	68, 157
SchI	GAGTC	3 cut(s)	190, 292, 469
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	188, 404
SmiMI	CAYNNNNRTG	1 cut(s)	228
SnaBI	TACGTA	1 cut(s)	352
SphI	GCATGC	1 cut(s)	50
Sse9I	AATT	3 cut(s)	207, 313, 530
SsiI	CCGC	5 cut(s)	215, 362, 396, 433, 453
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	3 cut(s)	354, 360, 444
TaqI	TCGA	2 cut(s)	177, 458
TasI	AATT	3 cut(s)	207, 313, 530
TatI	WGTACW	2 cut(s)	66, 155
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	486
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	67, 77, 186
TspGWI	ACGGA	1 cut(s)	20
Tth111I	GACNNNGTC	1 cut(s)	454
VpaK11BI	GGWCC	2 cut(s)	188, 404
XceI	RCATGY	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	2 cut(s)	68, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.