FvH4_6g15530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010135
Physical Location & Seq
Forward (+)
9645820 .. 9647052
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15530.t1

Sequence Viewer

Length: 297 bp
ATGGAGCTCATGAAGCACTCTACCATCCTCACCATCTTTCTTCTTCTCCTGCTTACAACACCTTACTTGGCAACAGGTGGAGAAGTATCAGCAGAGATGGTGGATAGTACTACTGAGGTTTATGAAATCGATTACAGAGGCCCAGAGACTCACTCCTCAATTCCACCTCCTGGTCACTTTCATGGGAAGAAGAAGCCTTTGCCTAATGTGATCCACAATGACAGCGTCGTCATTGGGAGTAAGAACAGCGGTGGCAATTACAACATGGGAAGAAAGGCGAAGAATATACATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.7

Weight (kDa)

7.02

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 170
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 205
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 170
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 205
AoxI GGCC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 22
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 3 cut(s) 32, 41, 91
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 140
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 137, 169
Bsa29I ATCGAT 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 145
BshFI GGCC 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 129
BspHI TCATGA 1 cut(s) 9
BspPI GGATC 1 cut(s) 205
BssMI GATC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 141
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 1 cut(s) 24
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 140
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 108
CviAII CATG 4 cut(s) 10, 182, 265, 290
CviJI RGCY 3 cut(s) 7, 141, 196
CviKI_1 RGCY 3 cut(s) 7, 141, 196
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 4 cut(s) 13, 185, 268, 293
FaiI YATR 6 cut(s) 11, 123, 183, 266, 287, 291
FatI CATG 4 cut(s) 9, 181, 264, 289
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 141
HgaI GACGC 1 cut(s) 214
Hin1II CATG 4 cut(s) 13, 185, 268, 293
HinfI GANTC 1 cut(s) 148
HphI GGTGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 4 cut(s) 13, 185, 268, 293
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 60, 62, 156, 156, 183
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 6 cut(s) 32, 35, 199, 202, 282, 292
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 2 cut(s) 159, 256
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 5 cut(s) 38, 109, 131, 166, 177
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 1 cut(s) 210
NlaIII CATG 4 cut(s) 13, 185, 268, 293
NmuCI GTSAC 1 cut(s) 173
PagI TCATGA 1 cut(s) 9
PflFI GACNNNGTC 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 170
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 180
SacI GAGCTC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 9, 64, 79, 120, 169
SgeI CNNG 9 cut(s) 22, 61, 79, 87, 155, 182, 183, 194, 277
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 2 cut(s) 159, 256
SsiI CCGC 1 cut(s) 249
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 169
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 159, 256
TatI WGTACW 1 cut(s) 107
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 26, 138, 170
Tth111I GACNNNGTC 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 170
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.