Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010135

Physical Location & Seq

Genomic Coordinates Reverse (-)

18663862 .. 18665052

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG204300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCCTAATCTACCTTTGCCTCGCTTCTTCCGTCCTTATTATTGGCATGCCATGGAGCTCATGAAGTACTCTACCTTCATCACCCTCTTTCTTCTCTTCCTTCTTACCACACCTTACTTTGCAAGAGGTGGAGAAATATCAGAGACGGTGGATAGTACTACTGAGGTTTATGAAATCGATTACAGAGGTCCAGAGACTCACTCATCAATTCCCCCGCCTGGTCACTTACATGGGAAGAAGAAGCCTTTGCCTAATGTGATCCACAAAGAAAGCGTCATTGGGAGTCCCAAATCTAAGAGGTTCAGGGGTGGCAATTATAACATGGGAAGAAAGGTAATTAAGATAAAAATTATATTGATATATACAGGCTTTGTAAGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.68

Weight (kDa)

9.9

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03120 AT5G03120
fragaria_vesca	FvH4_6g15530
malus_domestica	MD04G1102400.v1.1 MD12G1122100.v1.1
prunus_persica	Prupe.6G240500_v2.0.a1 Prupe.6G240500_v2.0.a1
pyrus_communis	pycom04g09770 pycom12g12110
rosa_chinensis	RchiOBHm_Chr3g0469031
rosa_laevigata	RLG00000024389
rosa_multiflora	Rmu_sc0000326.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412310
rosa_rugosa	Rorug03G0098600 Rorug03G0098700 Rorug03G0098700
rosa_samantha	Rh3AG148000 Rh3BG170800 Rh3DG204300
rosa_wichuraiana	Rw0G010960 Rw3G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	253
AfaI	GTAC	2 cut(s)	68, 157
AfiI	CCNNNNNNNGG	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	137, 188
AlwI	GGATC	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	60
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
Bbv12I	GWGCWC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	137, 188
BmcAI	AGTACT	2 cut(s)	68, 157
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	137, 188
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	154
BspDI	ATCGAT	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	60
BspPI	GGATC	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	162, 294
BstDSI	CCRYGG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	137, 188
BstMBI	GATC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	67, 156
CviAII	CATG	5 cut(s)	47, 52, 61, 230, 322
CviJI	RGCY	3 cut(s)	58, 244, 369
CviKI_1	RGCY	3 cut(s)	58, 244, 369
CviQI	GTAC	2 cut(s)	67, 156
DdeI	CTNAG	2 cut(s)	162, 294
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	5 cut(s)	50, 55, 64, 233, 325
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	5 cut(s)	46, 51, 60, 229, 321
FauI	CCCGC	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	60
HgaI	GACGC	1 cut(s)	262
Hin1II	CATG	5 cut(s)	50, 55, 64, 233, 325
HinfI	GANTC	2 cut(s)	196, 283
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	61, 191
HpyAV	CCTTC	2 cut(s)	85, 110
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	162, 294
Hsp92II	CATG	5 cut(s)	50, 55, 64, 233, 325
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	5 cut(s)	204, 204, 231, 289, 351
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	6 cut(s)	19, 83, 88, 247, 250, 339
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	4 cut(s)	207, 313, 336, 348
MlyI	GAGTC	2 cut(s)	190, 292
MnlI	CCTC	6 cut(s)	30, 95, 119, 157, 179, 291
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	5 cut(s)	50, 55, 64, 233, 325
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PagI	TCATGA	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PleI	GAGTC	2 cut(s)	190, 291
PpsI	GAGTC	2 cut(s)	190, 291
PsiI	TTATAA	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	188
RsaI	GTAC	2 cut(s)	68, 157
RsaNI	GTAC	2 cut(s)	67, 156
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	188
ScaI	AGTACT	2 cut(s)	68, 157
SchI	GAGTC	2 cut(s)	190, 292
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	9 cut(s)	16, 60, 77, 115, 130, 168, 190, 302, 336
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	228
SphI	GCATGC	1 cut(s)	50
Sse9I	AATT	4 cut(s)	207, 313, 336, 348
SsiI	CCGC	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	207, 313, 336, 348
TatI	WGTACW	2 cut(s)	66, 155
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	67, 77, 186
TspGWI	ACGGA	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	188
XceI	RCATGY	1 cut(s)	50
ZrmI	AGTACT	2 cut(s)	68, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.