Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010135

Physical Location & Seq

Genomic Coordinates Reverse (-)

7708895 .. 7712010

Gene Structure 3116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0098600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGGGAATGGCAGCGACCTTCAGTGTCTCGTCAGCTTCCCCAATCCTCAGCCGTCCATCACCGCTATCGTCTCTTTCCTTCTCATCCAAGCCGTTCATTTTGCCAATGCGGAGTCTCAACCGAGCAGCCCTGAGTCACAGATTTCCAAGGATAACGGCGTTTTCAAGCAACGATATTAAGGTGGGTTCCAACATTGAAGTTGACGGAGCTCCATGGCGAGTAATAGAGTTTCTTCATGTGAAACCTGGGAAAGGGGCTGCGTTTGTAAGGACCAAAATGCGCAATTATCTAACGGGAAACACTGTTGAGAAAACATTCCGGGCAGGAAGTACGATAAATGAGGCAGCTATCTACAAGGAAACCAAGCAATTCACATACAAAGATGGTCCCCAGTTTGTCTTCATGGACCTGACCACATTTGAAGAGACTCGTGTGAATGAATCTCAAATTGGGGAAAAAGTAAAATGGCTGAAAGAGGGAATGGACTGCAATTTGCTTCTATGGAATGATAGACTTTTCGATGTTGAAATCCCCATCACAGTGAAGCTGACTGTGGTTGATGTTGATCCTGGACTGAAAGGTGACACTGCTCAAGGTGGTGGAACGAAGCCAGCTACCCTTGACACTGGTGCTGTTGTCTTTGTCCCTTTGTTCATAAATATAGGTGATGAAATATTGGTAGATACTAGAACCGGGCAGTACATGAATCGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.33

Weight (kDa)

8.94

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	56 - 112	2.7e-26	Elongation factor P (EF-P) KOW-like domain
EFP	PF01132	124 - 172	2.1e-19	Elongation factor P (EF-P) OB domain
Elong-fact-P_C	PF09285	182 - 238	1.7e-24	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03120 AT5G03120
fragaria_vesca	FvH4_6g15530
malus_domestica	MD04G1102400.v1.1 MD12G1122100.v1.1
prunus_persica	Prupe.6G240500_v2.0.a1 Prupe.6G240500_v2.0.a1
pyrus_communis	pycom04g09770 pycom12g12110
rosa_chinensis	RchiOBHm_Chr3g0469031
rosa_laevigata	RLG00000024389
rosa_multiflora	Rmu_sc0000326.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412310
rosa_rugosa	Rorug03G0098600 Rorug03G0098700 Rorug03G0098700
rosa_samantha	Rh3AG148000 Rh3BG170800 Rh3DG204300
rosa_wichuraiana	Rw0G010960 Rw3G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	284
AciI	CCGC	3 cut(s)	5, 65, 112
AclWI	GGATC	1 cut(s)	563
AcuI	CTGAAG	1 cut(s)	7
AfaI	GTAC	2 cut(s)	334, 704
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	168, 200, 425, 530
AjnI	CCWGG	2 cut(s)	247, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	5 cut(s)	38, 212, 350, 550, 617
AluI	AGCT	5 cut(s)	38, 212, 350, 550, 617
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	4 cut(s)	34, 78, 122, 422
AlwI	GGATC	1 cut(s)	563
ApeKI	GCWGC	4 cut(s)	14, 128, 260, 347
Asp700I	GAANNNNTTC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	273, 389, 409
AsuC2I	CCSGG	2 cut(s)	323, 697
AsuHPI	GGTGA	3 cut(s)	54, 596, 680
AvaII	GGWCC	3 cut(s)	273, 389, 409
BanII	GRGCYC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	4 cut(s)	26, 140, 247, 359
BccI	CCATC	3 cut(s)	67, 380, 545
BceAI	ACGGC	3 cut(s)	39, 79, 174
BciT130I	CCWGG	2 cut(s)	249, 573
BcnI	CCSGG	2 cut(s)	323, 697
BcoDI	GTCTC	4 cut(s)	34, 78, 122, 422
BfaI	CTAG	1 cut(s)	690
BisI	GCNGC	4 cut(s)	15, 129, 261, 348
BlsI	GCNGC	4 cut(s)	16, 130, 262, 349
Bme1390I	CCNGG	4 cut(s)	249, 323, 573, 697
Bme18I	GGWCC	3 cut(s)	273, 389, 409
BmgT120I	GGNCC	3 cut(s)	273, 389, 409
BmiI	GGNNCC	2 cut(s)	190, 391
BmrFI	CCNGG	4 cut(s)	249, 323, 573, 697
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	579
BpuMI	CCSGG	2 cut(s)	323, 697
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	149, 215, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	394, 634
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	249, 573
BseDI	CCNNGG	3 cut(s)	149, 215, 248
BseGI	GGATG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	64, 125
BseNI	ACTGG	2 cut(s)	394, 634
BseXI	GCAGC	4 cut(s)	26, 140, 247, 359
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	322, 696
BslFI	GGGAC	2 cut(s)	375, 632
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	4 cut(s)	34, 78, 122, 422
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	2 cut(s)	375, 632
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	568
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	3 cut(s)	5, 65, 112
BspCNI	CTCAG	2 cut(s)	63, 126
BspLI	GGNNCC	2 cut(s)	190, 391
BspPI	GGATC	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	394, 634
BssECI	CCNNGG	3 cut(s)	149, 215, 248
BssMI	GATC	1 cut(s)	568
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	149, 215
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	249, 573
Bst4CI	ACNGT	3 cut(s)	307, 544, 556
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	2 cut(s)	50, 134
BstDSI	CCRYGG	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	4 cut(s)	34, 78, 122, 422
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	249, 573
BstSCI	CCNGG	4 cut(s)	247, 321, 571, 695
BstV1I	GCAGC	4 cut(s)	26, 140, 247, 359
BstV2I	GAAGAC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	5 cut(s)	31, 303, 549, 588, 627
Cac8I	GCNNGC	1 cut(s)	615
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	273, 389, 409
Csp6I	GTAC	2 cut(s)	333, 703
CviAII	CATG	4 cut(s)	216, 239, 406, 706
CviQI	GTAC	2 cut(s)	333, 703
DdeI	CTNAG	2 cut(s)	50, 134
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	149, 215
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	3 cut(s)	273, 389, 409
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	247, 571
EcoT14I	CCWWGG	2 cut(s)	149, 215
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	2 cut(s)	149, 215
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	4 cut(s)	219, 242, 409, 709
FaiI	YATR	9 cut(s)	217, 240, 379, 407, 505, 659, 665, 707, 718
FaqI	GGGAC	2 cut(s)	375, 632
FatI	CATG	4 cut(s)	215, 238, 405, 705
Fnu4HI	GCNGC	4 cut(s)	15, 129, 261, 348
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	15, 129, 261, 348
FspBI	CTAG	1 cut(s)	690
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	4 cut(s)	15, 129, 261, 348
HapII	CCGG	2 cut(s)	322, 696
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	4 cut(s)	219, 242, 409, 709
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	5 cut(s)	115, 136, 430, 443, 709
HpaII	CCGG	2 cut(s)	322, 696
HphI	GGTGA	3 cut(s)	54, 596, 680
Hpy166II	GTNNAC	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	31, 91
HpyCH4III	ACNGT	3 cut(s)	307, 544, 556
HpyCH4V	TGCA	2 cut(s)	492, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	50, 134
Hsp92II	CATG	4 cut(s)	219, 242, 409, 709
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	2 cut(s)	209, 217
Lsp1109I	GCAGC	4 cut(s)	26, 140, 247, 359
MaeI	CTAG	1 cut(s)	690
MaeIII	GTNAC	2 cut(s)	137, 584
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	3 cut(s)	227, 394, 437
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	4 cut(s)	286, 371, 450, 493
MlyI	GAGTC	3 cut(s)	124, 145, 424
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	3 cut(s)	59, 337, 472
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	542
MspI	CCGG	2 cut(s)	322, 696
MspR9I	CCNGG	4 cut(s)	249, 323, 573, 697
MvaI	CCWGG	2 cut(s)	249, 573
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	323, 697
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	568
NlaIII	CATG	4 cut(s)	219, 242, 409, 709
NlaIV	GGNNCC	2 cut(s)	190, 391
NmuCI	GTSAC	2 cut(s)	137, 584
NsbI	TGCGCA	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	443, 709
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	16, 130, 262, 349
PleI	GAGTC	3 cut(s)	123, 144, 424
PpsI	GAGTC	3 cut(s)	123, 144, 424
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	247, 571
PspGI	CCWGG	2 cut(s)	247, 571
PspN4I	GGNNCC	2 cut(s)	190, 391
PspPI	GGNCC	3 cut(s)	273, 389, 409
RsaI	GTAC	2 cut(s)	334, 704
RsaNI	GTAC	2 cut(s)	333, 703
RseI	CAYNNNNRTG	1 cut(s)	542
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	4 cut(s)	15, 129, 261, 348
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	3 cut(s)	273, 389, 409
SchI	GAGTC	3 cut(s)	124, 145, 424
ScrFI	CCNGG	4 cut(s)	249, 323, 573, 697
SduI	GDGCHC	1 cut(s)	214
SinI	GGWCC	3 cut(s)	273, 389, 409
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	4 cut(s)	286, 371, 450, 493
SsiI	CCGC	3 cut(s)	5, 65, 112
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	4 cut(s)	247, 321, 571, 695
StyI	CCWWGG	2 cut(s)	149, 215
TaaI	ACNGT	3 cut(s)	307, 544, 556
TaqI	TCGA	1 cut(s)	522
TasI	AATT	4 cut(s)	286, 371, 450, 493
TatI	WGTACW	1 cut(s)	702
TfiI	GAWTC	2 cut(s)	443, 709
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	5 cut(s)	31, 310, 549, 595, 634
TseFI	GTSAC	2 cut(s)	137, 584
TseI	GCWGC	4 cut(s)	14, 128, 260, 347
Tsp45I	GTSAC	2 cut(s)	137, 584
TspDTI	ATGAA	6 cut(s)	88, 227, 394, 456, 646, 687
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	5 cut(s)	31, 310, 549, 595, 634
VpaK11BI	GGWCC	3 cut(s)	273, 389, 409
XagI	CCTNNNNNAGG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.