Prupe.6G240500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010135
Physical Location & Seq
Forward (+)
23931104 .. 23932170
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G240500.1

Sequence Viewer

Length: 321 bp
ATGCTCATTTGGGTTTTTGCAGAGTCTGCTTTGAGCCTCATTGCCATGAAAATGGAGCTCAAGAACTCTACAATCCTCACTTTCCTTCTTCTCTTCTTGCTTGCCACCCCTTGTTTTTCTAGAGTAGGTGGATCAGATGTAGTGGGTACTGAGGTTTATGAGATTGATTATAGAGGTCCAGAGACCCACTCATCAATCCCACCACCTGATCACTCTCATGGGAAGCCTTTGATCCACAAAGAAAGTGCCATGGCAAGTCCTAAACCTAAGAGCTCTAGGGCTTCTAGCATGGGAAGAAAGGCCAAGCAAATGCATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.6

Weight (kDa)

9.21

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 139, 226
AfaI GTAC 1 cut(s) 148
AluBI AGCT 2 cut(s) 58, 273
AluI AGCT 2 cut(s) 58, 273
Alw21I GWGCWC 2 cut(s) 60, 275
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 2 cut(s) 139, 226
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 176
AvaII GGWCC 1 cut(s) 176
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BanII GRGCYC 2 cut(s) 60, 275
Bbv12I GWGCWC 2 cut(s) 60, 275
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 3 cut(s) 120, 276, 285
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpuEI CTTGAG 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 141
BshFI GGCC 1 cut(s) 302
BsiHKAI GWGCWC 2 cut(s) 60, 275
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 60, 275
Bsp143I GATC 3 cut(s) 131, 208, 231
Bsp19I CCATGG 1 cut(s) 249
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 142
BspPI GGATC 2 cut(s) 139, 226
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 3 cut(s) 131, 208, 231
BssT1I CCWWGG 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 150, 267
BstDSI CCRYGG 1 cut(s) 249
BstKTI GATC 3 cut(s) 134, 211, 234
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 131, 208, 231
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 147
CviAII CATG 5 cut(s) 46, 218, 250, 289, 314
CviJI RGCY 6 cut(s) 36, 58, 226, 273, 281, 302
CviKI_1 RGCY 6 cut(s) 36, 58, 226, 273, 281, 302
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 2 cut(s) 150, 267
DpnI GATC 3 cut(s) 133, 210, 233
DpnII GATC 3 cut(s) 131, 208, 231
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Ecl136II GAGCTC 2 cut(s) 58, 273
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 2 cut(s) 60, 275
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 2 cut(s) 58, 273
EcoICRI GAGCTC 2 cut(s) 58, 273
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 315
EcoT38I GRGCYC 2 cut(s) 60, 275
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 5 cut(s) 49, 221, 253, 292, 317
FaiI YATR 7 cut(s) 47, 159, 171, 219, 251, 290, 315
FatI CATG 5 cut(s) 45, 217, 249, 288, 313
FbaI TGATCA 1 cut(s) 208
FriOI GRGCYC 2 cut(s) 60, 275
FspBI CTAG 3 cut(s) 120, 276, 285
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 5 cut(s) 49, 221, 253, 292, 317
HinfI GANTC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 61, 120, 179
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 20, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 2 cut(s) 150, 267
Hsp92II CATG 5 cut(s) 49, 221, 253, 292, 317
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 131, 208, 231
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 192, 219
MaeI CTAG 3 cut(s) 120, 276, 285
MalI GATC 3 cut(s) 133, 210, 233
MboI GATC 3 cut(s) 131, 208, 231
MboII GAAGA 3 cut(s) 80, 85, 306
MhlI GDGCHC 2 cut(s) 60, 275
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 4 cut(s) 47, 86, 145, 167
Mph1103I ATGCAT 1 cut(s) 315
MslI CAYNNNNRTG 3 cut(s) 44, 50, 216
MwoI GCNNNNNNNGC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 249
NdeII GATC 3 cut(s) 131, 208, 231
NlaIII CATG 5 cut(s) 49, 221, 253, 292, 317
NsiI ATGCAT 1 cut(s) 315
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 2 cut(s) 60, 275
PspPI GGNCC 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 3 cut(s) 44, 50, 216
SacI GAGCTC 2 cut(s) 60, 275
Sau3AI GATC 3 cut(s) 131, 208, 231
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 2 cut(s) 60, 275
SetI ASST 7 cut(s) 60, 130, 156, 178, 208, 268, 275
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 3 cut(s) 44, 50, 216
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
SspMI CTAG 3 cut(s) 120, 276, 285
SstI GAGCTC 2 cut(s) 60, 275
StyI CCWWGG 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 119
XspI CTAG 3 cut(s) 120, 276, 285
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.