Rh3AG148000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010135
Physical Location & Seq
Forward (+)
13062787 .. 13063486
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG148000.1

Sequence Viewer

Length: 303 bp
ATGGAGCTCATGAAGTACTCTACCTTCATCACCATCTTTCTTCTCTTCCTGCTTACCACACCTTACTTTGCAAGAGGTGGAGAAATATCAGAGACGGTGGATAGTACTACTGAGGTTTATGAAATCGATTACAGAGGTCCAGAGACTCACTCATCAATTCCCCCGCCTGGTCACTTACATGGGAAGAAGAAGCCTTTGCCTAATGTGATCCACAAAGAAAGCGTCATTGGGAGTCCCAAATCTAAGAGGTTCAGGGGTGGCAATTATAACACGGGAAGAAAGACGAAGACAATAAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.23

Weight (kDa)

9.6

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AciI CCGC 1 cut(s) 164
AclWI GGATC 1 cut(s) 202
AfaI GTAC 2 cut(s) 17, 106
AfiI CCNNNNNNNGG 1 cut(s) 167
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 86, 137
AlwI GGATC 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 8, 40
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 86, 137
BmcAI AGTACT 2 cut(s) 17, 106
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bsa29I ATCGAT 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 86, 137
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 126
BspHI TCATGA 1 cut(s) 9
BspPI GGATC 1 cut(s) 202
BssMI GATC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 111, 243
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 2 cut(s) 86, 137
BstMBI GATC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 126
BsuTUI ATCGAT 1 cut(s) 126
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 16, 105
CviAII CATG 2 cut(s) 10, 179
CviJI RGCY 2 cut(s) 7, 193
CviKI_1 RGCY 2 cut(s) 7, 193
CviQI GTAC 2 cut(s) 16, 105
DdeI CTNAG 2 cut(s) 111, 243
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 2 cut(s) 13, 182
FaiI YATR 4 cut(s) 11, 120, 180, 267
FaqI GGGAC 1 cut(s) 219
FatI CATG 2 cut(s) 9, 178
FauI CCCGC 1 cut(s) 171
FriOI GRGCYC 1 cut(s) 9
HgaI GACGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 13, 182
HinfI GANTC 2 cut(s) 145, 232
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 10, 140
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 111, 243
Hsp92II CATG 2 cut(s) 13, 182
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 62, 153, 153, 180, 238
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 6 cut(s) 32, 37, 196, 199, 288, 298
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 2 cut(s) 156, 262
MlyI GAGTC 2 cut(s) 139, 241
MnlI CCTC 4 cut(s) 68, 106, 128, 240
MslI CAYNNNNRTG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
NdeII GATC 1 cut(s) 207
NlaIII CATG 2 cut(s) 13, 182
NmuCI GTSAC 1 cut(s) 170
PagI TCATGA 1 cut(s) 9
PleI GAGTC 2 cut(s) 139, 240
PpsI GAGTC 2 cut(s) 139, 240
PsiI TTATAA 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 137
RsaI GTAC 2 cut(s) 17, 106
RsaNI GTAC 2 cut(s) 16, 105
RseI CAYNNNNRTG 1 cut(s) 177
SacI GAGCTC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 137
ScaI AGTACT 2 cut(s) 17, 106
SchI GAGTC 2 cut(s) 139, 241
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 9
SetI ASST 7 cut(s) 9, 26, 64, 79, 117, 139, 251
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 156, 262
SsiI CCGC 1 cut(s) 164
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 156, 262
TatI WGTACW 2 cut(s) 15, 104
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 16, 26, 135
VpaK11BI GGWCC 1 cut(s) 137
ZrmI AGTACT 2 cut(s) 17, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.