RchiOBHm_Chr3g0469031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010135
Physical Location & Seq
Forward (+)
14841223 .. 14843336
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43489

Sequence Viewer

Length: 354 bp
ATGCCTAATCTATCTTTGCCTCGCTTCTTCCGTCCTTATTCTTGGCATGCCATGGAGCTCATGAAGTACTCTACCTTCATCACCATCTTTCTTCTCTTCCTGCTTACCACACCTTACTTTGCAAGAGGTGGAGAAATATCAGAGACGGTGGATAGTACTACTGAGGTTTATGAAATCGATTACAGAGGTCCAGAGACTCACTCATCAATTCCCCCGCCTGGTCACTTACATGGGAAGAAGAAGCCTTTGCCTAATGTGATCCACAAAGAAAGCGTCATTGGGAGTCCCAAATCTAAGAGGTTCAGGGGTGGCAATTATAACACGGGAAGAAAGACGAAGACAATAAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.33

Weight (kDa)

9.82

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 253
AfaI GTAC 2 cut(s) 68, 157
AfiI CCNNNNNNNGG 1 cut(s) 218
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 2 cut(s) 137, 188
AlwI GGATC 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 60
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 137, 188
BmcAI AGTACT 2 cut(s) 68, 157
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 219
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 153
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 60
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 137, 188
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 258
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 154
BspDI ATCGAT 1 cut(s) 177
BspHI TCATGA 1 cut(s) 60
BspPI GGATC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 162, 294
BstDSI CCRYGG 1 cut(s) 51
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 137, 188
BstMBI GATC 1 cut(s) 258
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 344
Bsu15I ATCGAT 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 67, 156
CviAII CATG 4 cut(s) 47, 52, 61, 230
CviJI RGCY 2 cut(s) 58, 244
CviKI_1 RGCY 2 cut(s) 58, 244
CviQI GTAC 2 cut(s) 67, 156
DdeI CTNAG 2 cut(s) 162, 294
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 4 cut(s) 50, 55, 64, 233
FaiI YATR 6 cut(s) 48, 53, 62, 171, 231, 318
FaqI GGGAC 1 cut(s) 270
FatI CATG 4 cut(s) 46, 51, 60, 229
FauI CCCGC 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 60
HgaI GACGC 1 cut(s) 262
Hin1II CATG 4 cut(s) 50, 55, 64, 233
HinfI GANTC 2 cut(s) 196, 283
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 61, 191
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 162, 294
Hsp92II CATG 4 cut(s) 50, 55, 64, 233
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 113, 204, 204, 231, 289
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 7 cut(s) 19, 83, 88, 247, 250, 339, 349
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 207, 313
MlyI GAGTC 2 cut(s) 190, 292
MnlI CCTC 5 cut(s) 30, 119, 157, 179, 291
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 51
NdeII GATC 1 cut(s) 258
NlaIII CATG 4 cut(s) 50, 55, 64, 233
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 50
PaeI GCATGC 1 cut(s) 50
PagI TCATGA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PleI GAGTC 2 cut(s) 190, 291
PpsI GAGTC 2 cut(s) 190, 291
PsiI TTATAA 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspPI GGNCC 1 cut(s) 188
RsaI GTAC 2 cut(s) 68, 157
RsaNI GTAC 2 cut(s) 67, 156
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 188
ScaI AGTACT 2 cut(s) 68, 157
SchI GAGTC 2 cut(s) 190, 292
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 60
SetI ASST 7 cut(s) 60, 77, 115, 130, 168, 190, 302
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 228
SphI GCATGC 1 cut(s) 50
Sse9I AATT 2 cut(s) 207, 313
SsiI CCGC 1 cut(s) 215
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 207, 313
TatI WGTACW 2 cut(s) 66, 155
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 3 cut(s) 67, 77, 186
TspGWI ACGGA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 50
ZrmI AGTACT 2 cut(s) 68, 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.