AT5G04910

DNA repair REX1-B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008780
Physical Location & Seq
Forward (+)
1437563 .. 1438978
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04910.1

Sequence Viewer

Length: 669 bp
ATGAGTGCCGAAGATTTCCAGAAGAAGGTTTCCCTCAGAGATTCCCTCTCCGGCGATATTGAGAACGAATGCGGCGGTTCCGGTGTCGGGTCTACTAGTTCGACGGTGGGCTCCGGCGTCGCCTCTCAAACCCTGGTCCTGCTTCGGAGTCTGTTGGAGATTCAGCAGCGCCGAGCTCAGGCTTACGCCAATCTCAAAAGTGGATTCTCAGAGTATGTGGAGTCTGGTGCTGAAGCACTTTATCAGAAGCTGTGCAGCGAGATTACAACGGAGTTCAGTGAATGTTCGAAACAAGTGCGCGAAATGGAATCTCTGTTTCTAAATCCAGAAGTTGGAAGAGCTGATCTTGCTAAACTTCTCAGCGACATTCAAACTCAAGAGAAGCAGAAATTGCATCTGACTGTTACAATACAGGTACTGAAGAAGGCAGGAAGACCGTCAGAACGAATGCTGACACATGAGAACTGCAAATTCAAGAAGCCTATGCAACACGAGTGCGTGCATCTTCATGAGATTACTGAAGCTGCAGGAACAGAGGAAGCAGAAGCAGATGCAGAGTTTGATAACGCTTTGAAGGAGGCCATTAGAGGAGTGCAAGATGCTGTGACTAGCATCAATGAGTATTTGGAAGACATTCGGTATGAGATTGAAGCCCTCGAAGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_repr_REX1B

Protein Analysis

222

Amino Acids

24.56

Weight (kDa)

4.83

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_repr_REX1B PF14966 47 - 141 1.2e-30 DNA repair REX1-B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AccI GTMKAC 1 cut(s) 92
AccII CGCG 1 cut(s) 300
AciI CCGC 2 cut(s) 72, 75
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 3 cut(s) 252, 440, 540
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 4 cut(s) 25, 87, 178, 332
AgsI TTSAA 4 cut(s) 371, 475, 574, 650
AhlI ACTAGT 1 cut(s) 95
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 5 cut(s) 176, 250, 341, 524, 662
AluI AGCT 5 cut(s) 176, 250, 341, 524, 662
Alw21I GWGCWC 1 cut(s) 178
AlwNI CAGNNNCTG 2 cut(s) 250, 418
AoxI GGCC 1 cut(s) 579
ApeKI GCWGC 3 cut(s) 166, 255, 524
ApoI RAATTY 1 cut(s) 470
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 2 cut(s) 171, 300
AspS9I GGNCC 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 2 cut(s) 113, 178
BauI CACGAG 1 cut(s) 491
BbsI GAAGAC 2 cut(s) 439, 636
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 178, 267, 511
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 1 cut(s) 134
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 2 cut(s) 96, 609
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 4 cut(s) 73, 167, 256, 525
BlsI GCNGC 4 cut(s) 74, 168, 257, 526
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 79, 112
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 5 cut(s) 403, 511, 541, 589, 621
BpiI GAAGAC 2 cut(s) 439, 636
BplI GAGNNNNNCTC 2 cut(s) 30, 62
Bpu10I CCTNAGC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 87, 178, 332
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 4 cut(s) 25, 87, 178, 332
BseMII CTCAG 4 cut(s) 49, 191, 222, 373
BseRI GAGGAG 1 cut(s) 603
BseXI GCAGC 3 cut(s) 178, 267, 511
BsgI GTGCAG 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 581
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 3 cut(s) 51, 81, 114
BslI CCNNNNNNNGG 4 cut(s) 25, 87, 178, 332
BsmI GAATGC 2 cut(s) 74, 453
BsnI GGCC 1 cut(s) 581
Bsp119I TTCGAA 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 113, 178
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 2 cut(s) 72, 75
BspANI GGCC 1 cut(s) 581
BspCNI CTCAG 4 cut(s) 48, 190, 221, 372
BspFNI CGCG 1 cut(s) 300
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 79, 112
BspMAI CTGCAG 1 cut(s) 529
BspQI GCTCTTC 1 cut(s) 331
BspT104I TTCGAA 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 343
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 491
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 3 cut(s) 106, 403, 438
Bst6I CTCTTC 1 cut(s) 331
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 4 cut(s) 35, 177, 208, 359
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 2 cut(s) 171, 300
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 3 cut(s) 347, 391, 659
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 178, 267, 511
BstV2I GAAGAC 2 cut(s) 439, 636
BsuRI GGCC 1 cut(s) 581
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 500
CaiI CAGNNNCTG 2 cut(s) 250, 418
CciI TCATGA 1 cut(s) 508
CfoI GCGC 2 cut(s) 171, 300
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 416
CviAII CATG 2 cut(s) 458, 509
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 4 cut(s) 35, 177, 208, 359
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 2 cut(s) 113, 178
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 176
Eco57I CTGAAG 3 cut(s) 252, 440, 540
EcoICRI GAGCTC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 132
EcoT38I GRGCYC 2 cut(s) 113, 178
FaeI CATG 2 cut(s) 461, 512
FaiI YATR 5 cut(s) 216, 459, 485, 510, 642
FatI CATG 2 cut(s) 457, 508
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 4 cut(s) 73, 167, 256, 525
FriOI GRGCYC 2 cut(s) 113, 178
Fsp4HI GCNGC 4 cut(s) 73, 167, 256, 525
FspBI CTAG 2 cut(s) 96, 609
GlaI GCGC 2 cut(s) 170, 299
GluI GCNGC 4 cut(s) 73, 167, 256, 525
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 581
HapII CCGG 3 cut(s) 51, 81, 114
HgaI GACGC 1 cut(s) 106
HhaI GCGC 2 cut(s) 171, 300
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 2 cut(s) 461, 512
Hin6I GCGC 2 cut(s) 169, 298
HinP1I GCGC 2 cut(s) 169, 298
HinfI GANTC 6 cut(s) 41, 148, 160, 204, 221, 308
HpaII CCGG 3 cut(s) 51, 81, 114
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 6 cut(s) 38, 147, 211, 246, 399, 442
Hpy188III TCNNGA 5 cut(s) 19, 326, 377, 475, 509
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 2 cut(s) 106, 122
HpyAV CCTTC 3 cut(s) 19, 418, 568
HpyCH4III ACNGT 3 cut(s) 106, 403, 438
HpyCH4V TGCA 8 cut(s) 255, 394, 468, 487, 502, 527, 554, 595
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 391, 659
HpyF3I CTNAG 4 cut(s) 35, 177, 208, 359
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 2 cut(s) 461, 512
HspAI GCGC 2 cut(s) 169, 298
Kzo9I GATC 1 cut(s) 343
LguI GCTCTTC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 116
Lsp1109I GCAGC 3 cut(s) 178, 267, 511
LweI GCATC 5 cut(s) 403, 511, 541, 589, 621
MaeI CTAG 2 cut(s) 96, 609
MaeIII GTNAC 2 cut(s) 403, 604
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 7 cut(s) 23, 34, 348, 433, 444, 497, 641
MhlI GDGCHC 2 cut(s) 113, 178
MluCI AATT 2 cut(s) 389, 470
MlyI GAGTC 2 cut(s) 157, 230
MmeI TCCRAC 2 cut(s) 135, 313
MnlI CCTC 7 cut(s) 44, 56, 133, 529, 571, 581, 665
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 1 cut(s) 667
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 3 cut(s) 51, 81, 114
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 2 cut(s) 74, 453
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 3 cut(s) 347, 391, 659
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 461, 512
NlaIV GGNNCC 2 cut(s) 79, 112
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 604
NspV TTCGAA 1 cut(s) 287
PagI TCATGA 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 331
PctI GAATGC 2 cut(s) 74, 453
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 41, 160, 204, 308
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 4 cut(s) 74, 168, 257, 526
PleI GAGTC 2 cut(s) 156, 229
PpsI GAGTC 2 cut(s) 156, 229
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 79, 112
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 529
PstNI CAGNNNCTG 2 cut(s) 250, 418
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 178
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 667
SatI GCNGC 4 cut(s) 73, 167, 256, 525
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 157, 230
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 2 cut(s) 113, 178
SetI ASST 7 cut(s) 30, 178, 252, 343, 417, 526, 664
SfaNI GCATC 5 cut(s) 403, 511, 541, 589, 621
SfcI CTRYAG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 287
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 2 cut(s) 389, 470
SsiI CCGC 2 cut(s) 72, 75
SspMI CTAG 2 cut(s) 96, 609
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 106, 403, 438
TaqI TCGA 3 cut(s) 101, 287, 657
TasI AATT 2 cut(s) 389, 470
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 4 cut(s) 41, 160, 204, 308
Tru1I TTAA 1 cut(s) 667
Tru9I TTAA 1 cut(s) 667
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 3 cut(s) 166, 255, 524
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 1 cut(s) 497
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 2 cut(s) 96, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.