RchiOBHm_Chr1g0331321

DNA repair REX1-B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008780
Physical Location & Seq
Reverse (-)
21148663 .. 21150252
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56035

Sequence Viewer

Length: 657 bp
ATGGAAGAATTTGAGAAGAAGTTAACAATTAGAGACGACGGCGACGGGGACGGCGACGGCGACGCAGTAATGGAAGCAGAAGAAGAAGAAGCTAAGAAGGTGTCCACCGTTGAATTGCTTCGCGAATTCCTTGGAATTCAGCAGCGCAGAGCAGAAGCATACACCAAGCTCAGAACGGGGTTCGCCCACTATATGGAGTCTTCATCATCTTCCTCTGCCGAGTCCGCCTATCAAAAGCTTTGCGGCGACGTCACCCAGGAATTCAACGATTGCTCTAGGCAAGTCCTTCACATGGAATCGCTTTTTCTGGGTCCTGATTATGGCAGACTTGATTTGGCCCATCTCCTCAGAGCTGTTCAGACGCATGAGAAGCAGAAATTGAACCTGACGGCGACACTTCAGTTGTTGAAGAAGGCTGGTAGACCCTCGGAGCGTCTAGTGAGTCATGAAAATTGCAGATTTGAGAAACCAATGGAGCATCAGTGTGTGCATCTCCATGAGATAACAGAAGCGGCTGGAACTGAAGAAGCAGAAGCCAACGCCCAGTATGATAATGATCTCAAGGAAGCCATTCGAGGGGTGCAGGATTCTGTCACTGCTATAAATGAACATTTGGAAGAAGTCAGATATGAAATTGCTGCCCTTGAATCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_repr_REX1B

Protein Analysis

218

Amino Acids

24.63

Weight (kDa)

4.82

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_repr_REX1B PF14966 38 - 137 3.8e-29 DNA repair REX1-B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 193
AccI GTMKAC 1 cut(s) 421
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 225, 243, 512
AcsI RAATTY 4 cut(s) 8, 125, 135, 260
AcuI CTGAAG 2 cut(s) 383, 543
AcyI GRCGYC 1 cut(s) 249
AfiI CCNNNNNNNGG 4 cut(s) 193, 292, 320, 576
AgsI TTSAA 5 cut(s) 113, 265, 382, 409, 647
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 4 cut(s) 92, 169, 238, 353
AluI AGCT 4 cut(s) 92, 169, 238, 353
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 142, 638
ApoI RAATTY 4 cut(s) 8, 125, 135, 260
Asp700I GAANNNNTTC 2 cut(s) 117, 570
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 2 cut(s) 311, 337
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 154, 625
BccI CCATC 1 cut(s) 348
BceAI ACGGC 4 cut(s) 55, 67, 73, 405
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 276, 437
BisI GCNGC 4 cut(s) 143, 244, 513, 639
BlsI GCNGC 4 cut(s) 144, 245, 514, 640
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 311, 337
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 2 cut(s) 487, 499
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 130, 255, 426
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 292, 320, 576
Bse1I ACTGG 1 cut(s) 544
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 3 cut(s) 130, 255, 426
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 4 cut(s) 193, 292, 320, 576
BseMII CTCAG 2 cut(s) 184, 361
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 2 cut(s) 154, 625
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 4 cut(s) 193, 292, 320, 576
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 338
Bsp143I GATC 1 cut(s) 556
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 3 cut(s) 225, 243, 512
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 183, 360
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 312
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 3 cut(s) 130, 255, 426
BssMI GATC 1 cut(s) 556
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 93, 170, 347
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 1 cut(s) 559
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 556
BstMWI GCNNNNNNNGC 2 cut(s) 224, 370
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 154, 625
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 338
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 488, 594
BtuMI TCGCGA 1 cut(s) 123
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 2 cut(s) 311, 337
CseI GACGC 3 cut(s) 71, 370, 422
CviAII CATG 4 cut(s) 292, 365, 446, 497
CviJI RGCY 9 cut(s) 92, 169, 238, 338, 353, 416, 515, 536, 569
CviKI_1 RGCY 9 cut(s) 92, 169, 238, 338, 353, 416, 515, 536, 569
DdeI CTNAG 3 cut(s) 93, 170, 347
DpnI GATC 1 cut(s) 558
DpnII GATC 1 cut(s) 556
EciI GGCGGA 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 2 cut(s) 383, 543
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 3 cut(s) 125, 135, 260
EcoRII CCWGG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 4 cut(s) 295, 368, 449, 500
FaqI GGGAC 1 cut(s) 62
FatI CATG 4 cut(s) 291, 364, 445, 496
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 143, 244, 513, 639
Fsp4HI GCNGC 4 cut(s) 143, 244, 513, 639
FspBI CTAG 2 cut(s) 276, 437
GlaI GCGC 1 cut(s) 146
GluI GCNGC 4 cut(s) 143, 244, 513, 639
HaeIII GGCC 1 cut(s) 338
HgaI GACGC 3 cut(s) 71, 370, 422
HhaI GCGC 1 cut(s) 147
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 4 cut(s) 295, 368, 449, 500
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 6 cut(s) 197, 221, 296, 442, 587, 647
HpaI GTTAAC 1 cut(s) 24
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 3 cut(s) 24, 105, 422
Hpy188I TCNGA 6 cut(s) 173, 350, 360, 430, 626, 652
Hpy188III TCNNGA 3 cut(s) 122, 314, 446
Hpy8I GTNNAC 3 cut(s) 24, 105, 422
Hpy99I CGWCG 5 cut(s) 41, 47, 59, 65, 251
HpyAV CCTTC 3 cut(s) 91, 296, 406
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 456, 490, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 370
HpyF3I CTNAG 3 cut(s) 93, 170, 347
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 4 cut(s) 295, 368, 449, 500
HspAI GCGC 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 556
LmnI GCTCC 2 cut(s) 430, 475
LpnPI CCDG 9 cut(s) 242, 269, 293, 327, 398, 402, 501, 557, 569
Lsp1109I GCAGC 2 cut(s) 154, 625
LweI GCATC 2 cut(s) 487, 499
MaeI CTAG 2 cut(s) 276, 437
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 250, 592
MalI GATC 1 cut(s) 558
MboI GATC 1 cut(s) 556
MluCI AATT 9 cut(s) 8, 27, 113, 125, 135, 260, 377, 451, 633
MlyI GAGTC 3 cut(s) 206, 230, 451
MnlI CCTC 4 cut(s) 223, 356, 436, 569
MroXI GAANNNNTTC 2 cut(s) 117, 570
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 483, 495
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 224, 370
NdeII GATC 1 cut(s) 556
NlaIII CATG 4 cut(s) 295, 368, 449, 500
NlaIV GGNNCC 1 cut(s) 312
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 250, 592
NruI TCGCGA 1 cut(s) 123
PagI TCATGA 1 cut(s) 445
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 57
PdmI GAANNNNTTC 2 cut(s) 117, 570
PfeI GAWTC 3 cut(s) 296, 587, 647
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 4 cut(s) 144, 245, 514, 640
PleI GAGTC 3 cut(s) 205, 229, 450
PpsI GAGTC 3 cut(s) 205, 229, 450
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 311, 337
PspPPI RGGWCCY 1 cut(s) 311
RruI TCGCGA 1 cut(s) 123
RseI CAYNNNNRTG 2 cut(s) 483, 495
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 4 cut(s) 143, 244, 513, 639
Sau3AI GATC 1 cut(s) 556
Sau96I GGNCC 2 cut(s) 311, 337
SchI GAGTC 3 cut(s) 206, 230, 451
ScrFI CCNGG 1 cut(s) 257
SetI ASST 7 cut(s) 94, 102, 171, 240, 252, 355, 387
SfaNI GCATC 2 cut(s) 487, 499
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 2 cut(s) 483, 495
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 9 cut(s) 8, 27, 113, 125, 135, 260, 377, 451, 633
SsiI CCGC 3 cut(s) 225, 243, 512
SspMI CTAG 2 cut(s) 276, 437
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 574
TasI AATT 9 cut(s) 8, 27, 113, 125, 135, 260, 377, 451, 633
TauI GCSGC 2 cut(s) 246, 515
TfiI GAWTC 3 cut(s) 296, 587, 647
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 488, 601
TseFI GTSAC 2 cut(s) 250, 592
TseI GCWGC 2 cut(s) 142, 638
Tsp45I GTSAC 2 cut(s) 250, 592
TspDTI ATGAA 4 cut(s) 192, 462, 621, 645
TspRI CASTG 2 cut(s) 488, 601
Van91I CCANNNNNTGG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 4 cut(s) 8, 125, 135, 260
XmiI GTMKAC 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 117, 570
XspI CTAG 2 cut(s) 276, 437
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.