RLG00000029744

DNA repair REX1-B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008780
Physical Location & Seq
Forward (+)
48238416 .. 48239165
750 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029744

Sequence Viewer

Length: 663 bp
ATGGAAGAATTTGAGAAGAAGTTAACAATTAGAGACGACAGCGACGGGGACGGCGACGGCGACGCAGTAATGGAAGCAGAAGAAGAAGAAGAAGAAGCTAAGAAGGTGTCCACCGTTGAATTGCTTCGCGAATTCCTTGGAATTCAGCAGCGCAGAGCAGAAGCATACACCAAGCTCAGAACGGGGTTCGCCCACTATATGGAGTCTTCATCATCTTCCTCAGCCGAGTCCGCCTATCAAAAGCTTTGCGGCGACGTCACCCAGGAATTCAACGATTGCTCCAAGCAAGTGCTTCACATGGAATCGCTTTTTCAGGGTCCTGATTATGTCAGACTCGATTTAGCCCACCTGCTCAGAGCTGTTCAGACGCATGAGAAGCAGAAATTGAACCTGACGGCGACACTTCAGTTGTTGAAGAAGGCCGGTAGACCGTCGGAGCGTCTAGTGAGTCATGAAAATTGCAGATTTGAGAAACCAATGGAGCATCAGTGTGTGCATCTCCATGAGATAACAGAAGCGGCTGGAACTGAAGAAGCAGAAGCCAACGCCCAGTATGATAATGATCTCAAGGAAGCCATTCGAGGGGTGCAGGATTCTGTCACTGCTATAAATGAACATTTGGAAGAAGTCAGATATGAAATTGCTGCCCTTGAAGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_repr_REX1B

Protein Analysis

221

Amino Acids

24.93

Weight (kDa)

4.76

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_repr_REX1B PF14966 40 - 139 2e-29 DNA repair REX1-B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 357
AatII GACGTC 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 199
AccI GTMKAC 1 cut(s) 427
AccII CGCG 1 cut(s) 129
AciI CCGC 3 cut(s) 231, 249, 518
AcsI RAATTY 4 cut(s) 8, 131, 141, 266
AcuI CTGAAG 2 cut(s) 389, 549
AcyI GRCGYC 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 199, 582
AgsI TTSAA 5 cut(s) 119, 271, 388, 415, 653
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 5 cut(s) 98, 175, 244, 359, 656
AluI AGCT 5 cut(s) 98, 175, 244, 359, 656
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 2 cut(s) 148, 644
ApoI RAATTY 4 cut(s) 8, 131, 141, 266
Asp700I GAANNNNTTC 2 cut(s) 123, 576
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 160, 631
BceAI ACGGC 3 cut(s) 67, 73, 411
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 4 cut(s) 149, 250, 519, 645
BlsI GCNGC 4 cut(s) 150, 251, 520, 646
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 2 cut(s) 493, 505
BmuI ACTGGG 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 136, 261
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 473, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 582
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 550
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 136, 261
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 2 cut(s) 199, 582
BseMII CTCAG 3 cut(s) 190, 234, 367
BseNI ACTGG 1 cut(s) 550
BseXI GCAGC 2 cut(s) 160, 631
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 422
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 199, 582
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 422
Bsp143I GATC 1 cut(s) 562
Bsp68I TCGCGA 1 cut(s) 129
BspACI CCGC 3 cut(s) 231, 249, 518
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 3 cut(s) 189, 233, 366
BspFNI CGCG 1 cut(s) 129
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 136, 261
BssMI GATC 1 cut(s) 562
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 115, 432
BstACI GRCGYC 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 99, 176, 220, 353
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 1 cut(s) 565
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 562
BstMWI GCNNNNNNNGC 3 cut(s) 230, 376, 653
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 160, 631
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 422
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 494, 600
BtuMI TCGCGA 1 cut(s) 129
BveI ACCTGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 451
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 3 cut(s) 71, 376, 428
CviAII CATG 4 cut(s) 298, 371, 452, 503
DdeI CTNAG 4 cut(s) 99, 176, 220, 353
DpnI GATC 1 cut(s) 564
DpnII GATC 1 cut(s) 562
EciI GGCGGA 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 389, 549
EcoO109I RGGNCCY 1 cut(s) 317
EcoRI GAATTC 3 cut(s) 131, 141, 266
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 4 cut(s) 301, 374, 455, 506
FaqI GGGAC 1 cut(s) 62
FatI CATG 4 cut(s) 297, 370, 451, 502
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 4 cut(s) 149, 250, 519, 645
Fsp4HI GCNGC 4 cut(s) 149, 250, 519, 645
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 152
GluI GCNGC 4 cut(s) 149, 250, 519, 645
HaeIII GGCC 1 cut(s) 422
HapII CCGG 1 cut(s) 423
HgaI GACGC 3 cut(s) 71, 376, 428
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 4 cut(s) 301, 374, 455, 506
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 6 cut(s) 203, 227, 302, 333, 448, 593
HpaI GTTAAC 1 cut(s) 24
HpaII CCGG 1 cut(s) 423
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 3 cut(s) 24, 111, 428
Hpy188I TCNGA 6 cut(s) 179, 332, 356, 366, 436, 632
Hpy188III TCNNGA 3 cut(s) 128, 320, 452
Hpy8I GTNNAC 3 cut(s) 24, 111, 428
Hpy99I CGWCG 5 cut(s) 47, 59, 65, 257, 436
HpyAV CCTTC 2 cut(s) 97, 412
HpyCH4III ACNGT 2 cut(s) 115, 432
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 462, 496, 589
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 376, 653
HpyF3I CTNAG 4 cut(s) 99, 176, 220, 353
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 4 cut(s) 301, 374, 455, 506
HspAI GCGC 1 cut(s) 151
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 562
LmnI GCTCC 3 cut(s) 284, 436, 481
Lsp1109I GCAGC 2 cut(s) 160, 631
LweI GCATC 2 cut(s) 493, 505
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 256, 598
MalI GATC 1 cut(s) 564
MboI GATC 1 cut(s) 562
MluCI AATT 9 cut(s) 8, 27, 119, 131, 141, 266, 383, 457, 639
MlyI GAGTC 4 cut(s) 212, 236, 327, 457
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 2 cut(s) 229, 575
MroXI GAANNNNTTC 2 cut(s) 123, 576
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 489, 501
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 230, 376, 653
NdeII GATC 1 cut(s) 562
NlaIII CATG 4 cut(s) 301, 374, 455, 506
NlaIV GGNNCC 1 cut(s) 318
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 256, 598
NruI TCGCGA 1 cut(s) 129
PagI TCATGA 1 cut(s) 451
PaqCI CACCTGC 1 cut(s) 357
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 57
PdmI GAANNNNTTC 2 cut(s) 123, 576
PfeI GAWTC 2 cut(s) 302, 593
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 4 cut(s) 150, 251, 520, 646
PleI GAGTC 4 cut(s) 211, 235, 327, 456
PpsI GAGTC 4 cut(s) 211, 235, 327, 456
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 317
PspPPI RGGWCCY 1 cut(s) 317
RruI TCGCGA 1 cut(s) 129
RseI CAYNNNNRTG 2 cut(s) 489, 501
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 4 cut(s) 149, 250, 519, 645
Sau3AI GATC 1 cut(s) 562
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 4 cut(s) 212, 236, 327, 457
ScrFI CCNGG 1 cut(s) 263
SetI ASST 9 cut(s) 100, 108, 177, 246, 258, 351, 361, 393, 658
SfaNI GCATC 2 cut(s) 493, 505
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 489, 501
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 9 cut(s) 8, 27, 119, 131, 141, 266, 383, 457, 639
SsiI CCGC 3 cut(s) 231, 249, 518
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 115, 432
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 336, 580
TasI AATT 9 cut(s) 8, 27, 119, 131, 141, 266, 383, 457, 639
TauI GCSGC 2 cut(s) 252, 521
TfiI GAWTC 2 cut(s) 302, 593
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 494, 607
TseFI GTSAC 2 cut(s) 256, 598
TseI GCWGC 2 cut(s) 148, 644
Tsp45I GTSAC 2 cut(s) 256, 598
TspDTI ATGAA 4 cut(s) 198, 468, 627, 651
TspRI CASTG 2 cut(s) 494, 607
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 4 cut(s) 8, 131, 141, 266
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 2 cut(s) 123, 576
XspI CTAG 1 cut(s) 443
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.