Rh1CG112400

DNA repair REX1-B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0008780
Physical Location & Seq
Reverse (-)
22659657 .. 22660638
982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG112400.1

Sequence Viewer

Length: 630 bp
ATGGAAGAATTTGAGAAGAAGTTAACAATTAGAGACGACAGCGACGGCGACGCAGTAATGGAAGCTAAGAAGGTGTCCACGGTTGAATTGCTTCGCGAATTCCTTGGAATTCAGCAGCGCAGAGCAGAAGCATACACCAAGCTCAGAACGGGGTTCGCCCACTATATGGAGTCTTCATCATCTTCCTCTGCCGAGTCCGCCTATCAAAAGCTTTGCGGCGACGTCACCCAGGAATTCAACGATTGCTCTAGGCAAGTCCTTCACATGGAATCGCTTTTTCTGGGTCCTGATTATGGCAGACTTGATTTGGCCCATCTCCTCAGAGCTGTTCAGACGCATGAGAAGCAGAAATTGAACCTGACGGCGACACTTCAGTTGTTGAAGAAGGCTGGTAGACCCTCGGAGCGTCTAGTGAGTCATGAAAATTGCAGCTTTGAGAAACCAATGGAGCATCAGTGTGTGCATCTCCATGAGATAACAGAAGCGGCTGGAACTGAAGAAGCAGAAGCCAACGCCCAGTATGATAATGATCTCAAGGAAGCCATTCGAGGGGTGCAGGATTCTGTCACTGCTATAAATGAACATTTGGAAGAAGTCAGATATGAAATTGCTGCCCTTGAATCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_repr_REX1B

Protein Analysis

209

Amino Acids

23.66

Weight (kDa)

5.04

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_repr_REX1B PF14966 29 - 128 3.4e-29 DNA repair REX1-B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccB7I CCANNNNNTGG 1 cut(s) 166
AccI GTMKAC 1 cut(s) 394
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 198, 216, 485
AcsI RAATTY 4 cut(s) 8, 98, 108, 233
AcuI CTGAAG 2 cut(s) 356, 516
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 4 cut(s) 166, 265, 293, 549
AgsI TTSAA 5 cut(s) 86, 238, 355, 382, 620
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 5 cut(s) 65, 142, 211, 326, 432
AluI AGCT 5 cut(s) 65, 142, 211, 326, 432
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 115, 429, 611
ApoI RAATTY 4 cut(s) 8, 98, 108, 233
Asp700I GAANNNNTTC 2 cut(s) 90, 543
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 284, 310
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 127, 441, 598
BccI CCATC 1 cut(s) 321
BceAI ACGGC 2 cut(s) 61, 378
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 249, 410
BisI GCNGC 5 cut(s) 116, 217, 430, 486, 612
BlsI GCNGC 5 cut(s) 117, 218, 431, 487, 613
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 284, 310
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 230
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 2 cut(s) 460, 472
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 528
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 78, 103, 228, 399
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 265, 293, 549
Bse1I ACTGG 1 cut(s) 517
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 4 cut(s) 78, 103, 228, 399
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 4 cut(s) 166, 265, 293, 549
BseMII CTCAG 2 cut(s) 157, 334
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 127, 441, 598
BsgI GTGCAG 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 1 cut(s) 311
BslI CCNNNNNNNGG 4 cut(s) 166, 265, 293, 549
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 529
Bsp68I TCGCGA 1 cut(s) 96
BspACI CCGC 3 cut(s) 198, 216, 485
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 2 cut(s) 156, 333
BspFNI CGCG 1 cut(s) 96
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 285
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 78, 103, 228, 399
BssMI GATC 1 cut(s) 529
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 222
BstDEI CTNAG 3 cut(s) 66, 143, 320
BstDSI CCRYGG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 2 cut(s) 197, 343
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 3 cut(s) 127, 441, 598
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 461, 567
BtuMI TCGCGA 1 cut(s) 96
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 284, 310
CseI GACGC 3 cut(s) 59, 343, 395
CviAII CATG 4 cut(s) 265, 338, 419, 470
DdeI CTNAG 3 cut(s) 66, 143, 320
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
EciI GGCGGA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 356, 516
EcoO109I RGGNCCY 1 cut(s) 284
EcoRI GAATTC 3 cut(s) 98, 108, 233
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 4 cut(s) 268, 341, 422, 473
FatI CATG 4 cut(s) 264, 337, 418, 469
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 116, 217, 430, 486, 612
Fsp4HI GCNGC 5 cut(s) 116, 217, 430, 486, 612
FspBI CTAG 2 cut(s) 249, 410
GlaI GCGC 1 cut(s) 119
GluI GCNGC 5 cut(s) 116, 217, 430, 486, 612
HaeIII GGCC 1 cut(s) 311
HgaI GACGC 3 cut(s) 59, 343, 395
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 268, 341, 422, 473
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 6 cut(s) 170, 194, 269, 415, 560, 620
HpaI GTTAAC 1 cut(s) 24
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 3 cut(s) 24, 78, 395
Hpy188I TCNGA 6 cut(s) 146, 323, 333, 403, 599, 625
Hpy188III TCNNGA 3 cut(s) 95, 287, 419
Hpy8I GTNNAC 3 cut(s) 24, 78, 395
Hpy99I CGWCG 3 cut(s) 47, 53, 224
HpyAV CCTTC 3 cut(s) 64, 269, 379
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 429, 463, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 343
HpyF3I CTNAG 3 cut(s) 66, 143, 320
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 268, 341, 422, 473
HspAI GCGC 1 cut(s) 118
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 403, 448
LpnPI CCDG 9 cut(s) 215, 242, 266, 300, 371, 375, 474, 530, 542
Lsp1109I GCAGC 3 cut(s) 127, 441, 598
LweI GCATC 2 cut(s) 460, 472
MaeI CTAG 2 cut(s) 249, 410
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 223, 565
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 7 cut(s) 17, 28, 165, 174, 394, 509, 602
MluCI AATT 9 cut(s) 8, 27, 86, 98, 108, 233, 350, 424, 606
MlyI GAGTC 3 cut(s) 179, 203, 424
MnlI CCTC 4 cut(s) 196, 329, 409, 542
MroXI GAANNNNTTC 2 cut(s) 90, 543
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 456, 468
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 197, 343
NdeII GATC 1 cut(s) 529
NlaIII CATG 4 cut(s) 268, 341, 422, 473
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 223, 565
NruI TCGCGA 1 cut(s) 96
PagI TCATGA 1 cut(s) 418
PdmI GAANNNNTTC 2 cut(s) 90, 543
PfeI GAWTC 3 cut(s) 269, 560, 620
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 5 cut(s) 117, 218, 431, 487, 613
PleI GAGTC 3 cut(s) 178, 202, 423
PpsI GAGTC 3 cut(s) 178, 202, 423
PpuMI RGGWCCY 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 284, 310
PspPPI RGGWCCY 1 cut(s) 284
RruI TCGCGA 1 cut(s) 96
RseI CAYNNNNRTG 2 cut(s) 456, 468
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 5 cut(s) 116, 217, 430, 486, 612
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 2 cut(s) 284, 310
SchI GAGTC 3 cut(s) 179, 203, 424
ScrFI CCNGG 1 cut(s) 230
SetI ASST 8 cut(s) 67, 75, 144, 213, 225, 328, 360, 434
SfaNI GCATC 2 cut(s) 460, 472
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 2 cut(s) 456, 468
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 9 cut(s) 8, 27, 86, 98, 108, 233, 350, 424, 606
SsiI CCGC 3 cut(s) 198, 216, 485
SspMI CTAG 2 cut(s) 249, 410
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 547
TasI AATT 9 cut(s) 8, 27, 86, 98, 108, 233, 350, 424, 606
TauI GCSGC 2 cut(s) 219, 488
TfiI GAWTC 3 cut(s) 269, 560, 620
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 461, 574
TseFI GTSAC 2 cut(s) 223, 565
TseI GCWGC 3 cut(s) 115, 429, 611
Tsp45I GTSAC 2 cut(s) 223, 565
TspDTI ATGAA 4 cut(s) 165, 435, 594, 618
TspRI CASTG 2 cut(s) 461, 574
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 4 cut(s) 8, 98, 108, 233
XmiI GTMKAC 1 cut(s) 394
XmnI GAANNNNTTC 2 cut(s) 90, 543
XspI CTAG 2 cut(s) 249, 410
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.