Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011642.1

Orthogroup ID

OG0008780

Physical Location & Seq

Genomic Coordinates Reverse (-)

11103 .. 11827

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011642.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggaagaatttgagaagaagttaacaattagagacgacagcgacggcgacgcagtaatggaagcagaagaagcagcagctaagaaggtgtccaccgttgaattgcttcgcgaattccttggaattcagcagcgcagagcagaagcatacaccaagctcagaacggggttcgcccactatatggagtcctcatcatcttcctctgccgagtccgcctatcaaaagctttgcggcgacgtcacccaggaattcaacgattgctctaggcaagtccttcacatggaatcgctttttctgggtcctgattatggcagacttgatttggcccatctcctcagagctgttcagacgcatgagaagcagaaattgaacctgacggcgacgcttcagttgttgaagaaggctggtagaccctcggagcgtctagtgagtcatgaaaattgcagatttgagaaaccaatggagcatcagtgtgtgcatctccatgagataacagaagcggctggaactgaagaagcagaagccaacgcccagtatgataatgatctcaaggaagccattcgaggggtgcaggattctgtcactgctataaatgaacatttggaagaagtcagatatgaaattgctgcccttgaatctgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_repr_REX1B

Protein Analysis

214

Amino Acids

24.2

Weight (kDa)

5.0

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04910
fragaria_vesca	FvH4_7g05010 FvH4_7g05010
malus_domestica	MD02G1265000.v1.1
prunus_persica	Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1
pyrus_communis	pycom02g22640 pycom02g22690
rosa_chinensis	RchiOBHm_Chr1g0331321
rosa_laevigata	RLG00000029744
rosa_multiflora	Rmu_sc0005956.1_g000013 Rmu_sc0011642.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319240
rosa_rugosa	Rorug01G0092600
rosa_samantha	Rh1AG117500 Rh1BG088000 Rh1BG088300 Rh1CG112400 Rh1DG121300
rosa_wichuraiana	Rw1G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	409
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	213, 231, 500
AcsI	RAATTY	4 cut(s)	8, 113, 123, 248
AcuI	CTGAAG	2 cut(s)	371, 531
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	4 cut(s)	181, 280, 308, 564
AgsI	TTSAA	5 cut(s)	101, 253, 370, 397, 635
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	80, 157, 226, 341
AluI	AGCT	4 cut(s)	80, 157, 226, 341
Alw26I	GTCTC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	4 cut(s)	74, 77, 130, 626
ApoI	RAATTY	4 cut(s)	8, 113, 123, 248
Asp700I	GAANNNNTTC	2 cut(s)	105, 558
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	299, 325
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	86, 89, 142, 613
BccI	CCATC	1 cut(s)	336
BceAI	ACGGC	2 cut(s)	61, 393
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	264, 425
BisI	GCNGC	6 cut(s)	75, 78, 131, 232, 501, 627
BlsI	GCNGC	6 cut(s)	76, 79, 132, 233, 502, 628
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	299, 325
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	475, 487
BmuI	ACTGGG	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	118, 243, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 280, 308, 564
Bse1I	ACTGG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	118, 243, 414
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	4 cut(s)	181, 280, 308, 564
BseMII	CTCAG	2 cut(s)	172, 349
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	86, 89, 142, 613
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	326
BslI	CCNNNNNNNGG	4 cut(s)	181, 280, 308, 564
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	544
Bsp68I	TCGCGA	1 cut(s)	111
BspACI	CCGC	3 cut(s)	213, 231, 500
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	2 cut(s)	171, 348
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	3 cut(s)	118, 243, 414
BssMI	GATC	1 cut(s)	544
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	81, 158, 335
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 212, 358
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	86, 89, 142, 613
BsuRI	GGCC	1 cut(s)	326
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	2 cut(s)	476, 582
BtuMI	TCGCGA	1 cut(s)	111
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	299, 325
CseI	GACGC	4 cut(s)	59, 358, 391, 410
CviAII	CATG	4 cut(s)	280, 353, 434, 485
CviJI	RGCY	9 cut(s)	80, 157, 226, 326, 341, 404, 503, 524, 557
CviKI_1	RGCY	9 cut(s)	80, 157, 226, 326, 341, 404, 503, 524, 557
DdeI	CTNAG	3 cut(s)	81, 158, 335
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	371, 531
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRI	GAATTC	3 cut(s)	113, 123, 248
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	4 cut(s)	283, 356, 437, 488
FatI	CATG	4 cut(s)	279, 352, 433, 484
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	6 cut(s)	75, 78, 131, 232, 501, 627
Fsp4HI	GCNGC	6 cut(s)	75, 78, 131, 232, 501, 627
FspBI	CTAG	2 cut(s)	264, 425
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	6 cut(s)	75, 78, 131, 232, 501, 627
HaeIII	GGCC	1 cut(s)	326
HgaI	GACGC	4 cut(s)	59, 358, 391, 410
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	283, 356, 437, 488
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	6 cut(s)	185, 209, 284, 430, 575, 635
HpaI	GTTAAC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	3 cut(s)	24, 93, 410
Hpy188I	TCNGA	6 cut(s)	161, 338, 348, 418, 614, 640
Hpy188III	TCNNGA	3 cut(s)	110, 302, 434
Hpy8I	GTNNAC	3 cut(s)	24, 93, 410
Hpy99I	CGWCG	4 cut(s)	47, 53, 239, 385
HpyAV	CCTTC	3 cut(s)	79, 284, 394
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	444, 478, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 212, 358
HpyF3I	CTNAG	3 cut(s)	81, 158, 335
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	283, 356, 437, 488
HspAI	GCGC	1 cut(s)	133
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	544
LmnI	GCTCC	2 cut(s)	418, 463
LpnPI	CCDG	9 cut(s)	230, 257, 281, 315, 386, 390, 489, 545, 557
Lsp1109I	GCAGC	4 cut(s)	86, 89, 142, 613
LweI	GCATC	2 cut(s)	475, 487
MaeI	CTAG	2 cut(s)	264, 425
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	238, 580
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MboII	GAAGA	7 cut(s)	17, 28, 80, 189, 409, 524, 617
MluCI	AATT	9 cut(s)	8, 27, 101, 113, 123, 248, 365, 439, 621
MlyI	GAGTC	3 cut(s)	194, 218, 439
MnlI	CCTC	5 cut(s)	199, 211, 344, 424, 557
MroXI	GAANNNNTTC	2 cut(s)	105, 558
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	2 cut(s)	471, 483
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	71, 212, 358
NdeII	GATC	1 cut(s)	544
NlaIII	CATG	4 cut(s)	283, 356, 437, 488
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	238, 580
NruI	TCGCGA	1 cut(s)	111
PagI	TCATGA	1 cut(s)	433
PdmI	GAANNNNTTC	2 cut(s)	105, 558
PfeI	GAWTC	3 cut(s)	284, 575, 635
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	6 cut(s)	76, 79, 132, 233, 502, 628
PleI	GAGTC	3 cut(s)	193, 217, 438
PpsI	GAGTC	3 cut(s)	193, 217, 438
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	299, 325
PspPPI	RGGWCCY	1 cut(s)	299
RruI	TCGCGA	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	471, 483
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	6 cut(s)	75, 78, 131, 232, 501, 627
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	2 cut(s)	299, 325
SchI	GAGTC	3 cut(s)	194, 218, 439
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	7 cut(s)	82, 90, 159, 228, 240, 343, 375
SfaNI	GCATC	2 cut(s)	475, 487
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	2 cut(s)	471, 483
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	9 cut(s)	8, 27, 101, 113, 123, 248, 365, 439, 621
SsiI	CCGC	3 cut(s)	213, 231, 500
SspMI	CTAG	2 cut(s)	264, 425
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	562
TasI	AATT	9 cut(s)	8, 27, 101, 113, 123, 248, 365, 439, 621
TauI	GCSGC	2 cut(s)	234, 503
TfiI	GAWTC	3 cut(s)	284, 575, 635
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	2 cut(s)	476, 589
TseFI	GTSAC	2 cut(s)	238, 580
TseI	GCWGC	4 cut(s)	74, 77, 130, 626
Tsp45I	GTSAC	2 cut(s)	238, 580
TspDTI	ATGAA	3 cut(s)	450, 609, 633
TspRI	CASTG	2 cut(s)	476, 589
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	4 cut(s)	8, 113, 123, 248
XmiI	GTMKAC	1 cut(s)	409
XmnI	GAANNNNTTC	2 cut(s)	105, 558
XspI	CTAG	2 cut(s)	264, 425
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.