pycom02g22640

DNA repair REX1-B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0008780
Physical Location & Seq
Forward (+)
20852931 .. 20853977
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g22640.2

Sequence Viewer

Length: 636 bp
ATGGAAGAATTTGACAAGAAGGTATCAATCACAGACCCAATGGAAGAAGAAAGTGTGGCATCTAAAACAAAAACCGTCGCTTTGCTCCGCGAGTTCCTCGGAATTCAGCAGCGGAGGGCGGAGGCCTACGCCAAGCTCAAACGAGGGTTTGGGGAGTATATGGAGTCGTCGCCGCCCTCGTCGGGAGTAGATGCGGAGTTGGCGTACCAGCAAGTTTGCAGTGAGGTGACGCTCGAATTCAACGAGTGCTCGAAGCAAGTTCTTCGGATCGAATCGCTGTTCCTCAACGATCCCGATTTCTCCCGGATTGATTTAGCCCATCTCCTCAGAGCTGTTCAGACCCACGAGAAGCAAAAATTGAATTTGACGGTGACAATTCAGGTGTTGAAGAGGGCTGGAAGACCCTCAGAGCGTCTGGTGAGTCATGAAAATTGCAGATTTAACAGACCAATGGAGCATGAATGCGTGCATCTCCACGAGATAACAGAAGCTGCCGGAACTGAAGAGGCAGAAGTGAATGCCCAGTATGATAATGATCTCAAGGAGGCCATTAGAGGGGTGCAGGATGCTGTAACCGCTATAAATGAGCATTTGGAAGAAGTCAGATACGAAATTGCCGCCCTTGAAACCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_repr_REX1B

Protein Analysis

212

Amino Acids

24.03

Weight (kDa)

4.96

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 7 cut(s) 88, 112, 119, 173, 194, 576, 618
AclWI GGATC 2 cut(s) 275, 284
AcsI RAATTY 4 cut(s) 8, 102, 236, 361
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 182, 555
AgsI TTSAA 4 cut(s) 241, 361, 388, 626
AluBI AGCT 3 cut(s) 136, 332, 491
AluI AGCT 3 cut(s) 136, 332, 491
Alw21I GWGCWC 1 cut(s) 251
AlwI GGATC 2 cut(s) 275, 284
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 2 cut(s) 123, 546
ApeKI GCWGC 2 cut(s) 109, 491
ApoI RAATTY 4 cut(s) 8, 102, 236, 361
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 238, 382, 430
BauI CACGAG 2 cut(s) 344, 476
BbsI GAAGAC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 121, 478
BccI CCATC 1 cut(s) 327
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BcnI CCSGG 1 cut(s) 304
BisI GCNGC 4 cut(s) 110, 173, 492, 618
BlsI GCNGC 4 cut(s) 111, 174, 493, 619
Bme1390I CCNGG 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 4 cut(s) 68, 181, 478, 556
BmuI ACTGGG 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 304
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 555
Bse1I ACTGG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 571
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 2 cut(s) 182, 555
BseMII CTCAG 2 cut(s) 340, 420
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 121, 478
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 125, 548
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 304, 495
BslI CCNNNNNNNGG 2 cut(s) 182, 555
BsmI GAATGC 2 cut(s) 467, 523
BsnI GGCC 2 cut(s) 125, 548
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 3 cut(s) 267, 289, 535
BspACI CCGC 7 cut(s) 88, 112, 119, 173, 194, 576, 618
BspANI GGCC 2 cut(s) 125, 548
BspCNI CTCAG 2 cut(s) 339, 419
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 424
BspPI GGATC 2 cut(s) 275, 284
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 3 cut(s) 267, 289, 535
BssSI CACGAG 2 cut(s) 344, 476
Bst2BI CACGAG 2 cut(s) 344, 476
Bst4CI ACNGT 2 cut(s) 76, 370
Bst6I CTCTTC 2 cut(s) 383, 498
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 2 cut(s) 326, 406
BstF5I GGATG 1 cut(s) 571
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 3 cut(s) 270, 292, 538
BstMBI GATC 3 cut(s) 267, 289, 535
BstMWI GCNNNNNNNGC 2 cut(s) 200, 575
BstSCI CCNGG 1 cut(s) 302
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 121, 478
BstV2I GAAGAC 1 cut(s) 406
BsuRI GGCC 2 cut(s) 125, 548
BtsCI GGATG 1 cut(s) 571
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 467
CaiI CAGNNNCTG 1 cut(s) 491
CciI TCATGA 1 cut(s) 424
CseI GACGC 2 cut(s) 238, 401
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 425, 458
CviJI RGCY 7 cut(s) 125, 136, 317, 332, 395, 491, 548
CviKI_1 RGCY 7 cut(s) 125, 136, 317, 332, 395, 491, 548
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 326, 406
DpnI GATC 3 cut(s) 269, 291, 537
DpnII GATC 3 cut(s) 267, 289, 535
Eam1104I CTCTTC 2 cut(s) 383, 498
EarI CTCTTC 2 cut(s) 383, 498
EciI GGCGGA 1 cut(s) 134
Eco147I AGGCCT 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 522
EcoRI GAATTC 2 cut(s) 102, 236
FaeI CATG 2 cut(s) 428, 461
FaiI YATR 6 cut(s) 159, 161, 426, 459, 528, 581
FatI CATG 2 cut(s) 424, 457
Fnu4HI GCNGC 4 cut(s) 110, 173, 492, 618
FokI GGATG 1 cut(s) 578
Fsp4HI GCNGC 4 cut(s) 110, 173, 492, 618
GluI GCNGC 4 cut(s) 110, 173, 492, 618
HaeIII GGCC 2 cut(s) 125, 548
HapII CCGG 2 cut(s) 304, 495
HgaI GACGC 2 cut(s) 238, 401
Hin1II CATG 2 cut(s) 428, 461
HinfI GANTC 3 cut(s) 164, 272, 421
HpaII CCGG 2 cut(s) 304, 495
HphI GGTGA 3 cut(s) 238, 382, 430
Hpy188I TCNGA 6 cut(s) 101, 267, 329, 339, 409, 605
Hpy188III TCNNGA 3 cut(s) 183, 293, 425
Hpy99I CGWCG 3 cut(s) 80, 172, 184
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 76, 370
HpyCH4V TGCA 4 cut(s) 219, 435, 469, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 575
HpyF3I CTNAG 2 cut(s) 326, 406
Hsp92II CATG 2 cut(s) 428, 461
Kzo9I GATC 3 cut(s) 267, 289, 535
LmnI GCTCC 2 cut(s) 90, 454
LpnPI CCDG 8 cut(s) 221, 317, 365, 381, 401, 508, 536, 548
Lsp1109I GCAGC 2 cut(s) 121, 478
LweI GCATC 4 cut(s) 68, 181, 478, 556
MaeIII GTNAC 3 cut(s) 226, 370, 571
MalI GATC 3 cut(s) 269, 291, 537
MboI GATC 3 cut(s) 267, 289, 535
MboII GAAGA 8 cut(s) 17, 56, 59, 254, 400, 411, 515, 608
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 8 cut(s) 8, 102, 236, 356, 361, 375, 430, 612
MlyI GAGTC 2 cut(s) 173, 430
MseI TTAA 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 2 cut(s) 304, 495
MspR9I CCNGG 1 cut(s) 304
Mva1269I GAATGC 2 cut(s) 467, 523
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 200, 575
NciI CCSGG 1 cut(s) 304
NdeII GATC 3 cut(s) 267, 289, 535
NlaIII CATG 2 cut(s) 428, 461
NmuCI GTSAC 2 cut(s) 226, 370
PagI TCATGA 1 cut(s) 424
PceI AGGCCT 1 cut(s) 125
PcsI WCGNNNNNNNCGW 2 cut(s) 176, 240
PctI GAATGC 2 cut(s) 467, 523
PfeI GAWTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 4 cut(s) 111, 174, 493, 619
PleI GAGTC 2 cut(s) 172, 429
PpsI GAGTC 2 cut(s) 172, 429
PstNI CAGNNNCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 4 cut(s) 110, 173, 492, 618
Sau3AI GATC 3 cut(s) 267, 289, 535
SchI GAGTC 2 cut(s) 173, 430
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 1 cut(s) 251
SetI ASST 6 cut(s) 24, 138, 228, 334, 384, 493
SfaNI GCATC 4 cut(s) 68, 181, 478, 556
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 8 cut(s) 8, 102, 236, 356, 361, 375, 430, 612
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 7 cut(s) 88, 112, 119, 173, 194, 576, 618
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 76, 370
TaqI TCGA 3 cut(s) 234, 251, 270
TasI AATT 8 cut(s) 8, 102, 236, 356, 361, 375, 430, 612
TauI GCSGC 2 cut(s) 175, 620
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 226, 370
TseI GCWGC 2 cut(s) 109, 491
Tsp45I GTSAC 2 cut(s) 226, 370
TspDTI ATGAA 2 cut(s) 441, 474
TspRI CASTG 1 cut(s) 226
XapI RAATTY 4 cut(s) 8, 102, 236, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.