Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008780

Physical Location & Seq

Genomic Coordinates Reverse (-)

7717912 .. 7720182

Gene Structure 2271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G061000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAAGAATTTGAGAAGAAGGTCTCACTAAGAGACCCAATGGAAGAAGAAGAAGAAGAAAGGGAGAAGGCAGGAAAGTGCTCGTCGAAAACCATCGATTTGCTGCGCGAGTTCCTCGGAATTCAGCAGCGGAGGGCGGAAGCATACGCGAAGTTGAAAAGAGGGTTTGGGGAGTATATGGTGTCGTGTTCAGGGGCACATGGGGAGTTGGCCTACCAACAAGTTTGCAGTGAGGTGACGCTGGAATTCAACGAGTGCTCAAAGCACGTGCTTCGTATTGAATCGCTCTTTCTCAACGATCCCGATTATGGCCGAGTTGATTTGGCCCATCTCCTCAGAGCTGTCCAAACCCAGGAGAAGCAAAAATTGAATTTGACGGCTACAATTCAGGTGCTGAAGAAGGCTGGTAGACCCTCGGAGCGTCTGGTGAGTCATGAAAACTGCAGATTTAAGAAACCAATGGAGCATGAGTGTGTGCATCTCCATGAGATAACAGAAGCTGCTGGAACTGAAGAGGCAGAAGCAGATGCCCAGTATGATAATGATCTCAAGGAAGCCATTAGAGGGGTGCAGGATGCTGTGACCGCTATAAATGAGCATTTGGAAGAAGTCAGATATGAAATTGCTGCCCTTGAAGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_repr_REX1B

Protein Analysis

215

Amino Acids

24.45

Weight (kDa)

5.07

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04910
fragaria_vesca	FvH4_7g05010 FvH4_7g05010
malus_domestica	MD02G1265000.v1.1
prunus_persica	Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1
pyrus_communis	pycom02g22640 pycom02g22690
rosa_chinensis	RchiOBHm_Chr1g0331321
rosa_laevigata	RLG00000029744
rosa_multiflora	Rmu_sc0005956.1_g000013 Rmu_sc0011642.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319240
rosa_rugosa	Rorug01G0092600
rosa_samantha	Rh1AG117500 Rh1BG088000 Rh1BG088300 Rh1CG112400 Rh1DG121300
rosa_wichuraiana	Rw1G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	409
AccII	CGCG	2 cut(s)	108, 149
AciI	CCGC	3 cut(s)	130, 137, 585
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	4 cut(s)	8, 120, 245, 370
AcuI	CTGAAG	2 cut(s)	416, 531
AcvI	CACGTG	1 cut(s)	268
AfiI	CCNNNNNNNGG	3 cut(s)	308, 352, 564
AgsI	TTSAA	5 cut(s)	157, 250, 281, 370, 635
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	3 cut(s)	341, 500, 638
AluI	AGCT	3 cut(s)	341, 500, 638
Alw21I	GWGCWC	2 cut(s)	83, 260
Alw26I	GTCTC	2 cut(s)	27, 28
AlwI	GGATC	1 cut(s)	293
AlwNI	CAGNNNCTG	2 cut(s)	394, 500
AoxI	GGCC	3 cut(s)	210, 310, 324
ApeKI	GCWGC	4 cut(s)	103, 127, 500, 626
ApoI	RAATTY	4 cut(s)	8, 120, 245, 370
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	247, 439
BaeGI	GKGCMC	1 cut(s)	199
BbrPI	CACGTG	1 cut(s)	268
Bbv12I	GWGCWC	2 cut(s)	83, 260
BbvI	GCAGC	4 cut(s)	90, 139, 487, 613
BccI	CCATC	2 cut(s)	101, 336
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	27, 28
BfmI	CTRYAG	1 cut(s)	442
BisI	GCNGC	4 cut(s)	104, 128, 501, 627
BlsI	GCNGC	4 cut(s)	105, 129, 502, 628
Bme1390I	CCNGG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	3 cut(s)	487, 517, 565
BmuI	ACTGGG	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	533
Bsa29I	ATCGAT	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	543
BsaI	GGTCTC	2 cut(s)	27, 28
BsaJI	CCNNGG	3 cut(s)	115, 351, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 352, 564
Bse1I	ACTGG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	353
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	115, 351, 414
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	3 cut(s)	308, 352, 564
BseMII	CTCAG	2 cut(s)	349, 630
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	4 cut(s)	90, 139, 487, 613
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	2 cut(s)	108, 149
BshFI	GGCC	3 cut(s)	212, 312, 326
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	83, 260
BslI	CCNNNNNNNGG	3 cut(s)	308, 352, 564
BsmAI	GTCTC	2 cut(s)	27, 28
BsnI	GGCC	3 cut(s)	212, 312, 326
Bso31I	GGTCTC	2 cut(s)	27, 28
Bsp1286I	GDGCHC	3 cut(s)	83, 199, 260
Bsp143I	GATC	2 cut(s)	298, 544
BspACI	CCGC	3 cut(s)	130, 137, 585
BspANI	GGCC	3 cut(s)	212, 312, 326
BspCNI	CTCAG	2 cut(s)	348, 631
BspDI	ATCGAT	1 cut(s)	96
BspFNI	CGCG	2 cut(s)	108, 149
BspHI	TCATGA	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	446
BspPI	GGATC	1 cut(s)	293
BspTNI	GGTCTC	2 cut(s)	27, 28
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	3 cut(s)	115, 351, 414
BssMI	GATC	2 cut(s)	298, 544
Bst2UI	CCWGG	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	268
BstDEI	CTNAG	3 cut(s)	29, 335, 639
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	2 cut(s)	108, 149
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	2 cut(s)	301, 547
BstMAI	GTCTC	2 cut(s)	27, 28
BstMBI	GATC	2 cut(s)	298, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	584, 635
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	2 cut(s)	108, 149
BstV1I	GCAGC	4 cut(s)	90, 139, 487, 613
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	212, 312, 326
BsuTUI	ATCGAT	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	235
CaiI	CAGNNNCTG	2 cut(s)	394, 500
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	96
CseI	GACGC	2 cut(s)	247, 410
CviAII	CATG	4 cut(s)	200, 434, 467, 485
CviJI	RGCY	9 cut(s)	212, 312, 326, 341, 380, 404, 500, 557, 638
CviKI_1	RGCY	9 cut(s)	212, 312, 326, 341, 380, 404, 500, 557, 638
DdeI	CTNAG	3 cut(s)	29, 335, 639
DpnI	GATC	2 cut(s)	300, 546
DpnII	GATC	2 cut(s)	298, 544
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
EciI	GGCGGA	1 cut(s)	152
Eco31I	GGTCTC	2 cut(s)	27, 28
Eco57I	CTGAAG	2 cut(s)	416, 531
Eco72I	CACGTG	1 cut(s)	268
EcoRI	GAATTC	2 cut(s)	120, 245
EcoRII	CCWGG	1 cut(s)	351
FaeI	CATG	4 cut(s)	203, 437, 470, 488
FatI	CATG	4 cut(s)	199, 433, 466, 484
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	104, 128, 501, 627
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	4 cut(s)	104, 128, 501, 627
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	4 cut(s)	104, 128, 501, 627
HaeIII	GGCC	3 cut(s)	212, 312, 326
HgaI	GACGC	2 cut(s)	247, 410
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	203, 437, 470, 488
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	281, 430
HphI	GGTGA	2 cut(s)	247, 439
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	4 cut(s)	119, 338, 418, 614
Hpy188III	TCNNGA	2 cut(s)	302, 434
Hpy8I	GTNNAC	1 cut(s)	410
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	13, 61, 394
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	228, 444, 478, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	584, 635
HpyF3I	CTNAG	3 cut(s)	29, 335, 639
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	203, 437, 470, 488
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	298, 544
LmnI	GCTCC	2 cut(s)	418, 463
Lsp1109I	GCAGC	4 cut(s)	90, 139, 487, 613
LweI	GCATC	3 cut(s)	487, 517, 565
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	235, 580
MalI	GATC	2 cut(s)	300, 546
MboI	GATC	2 cut(s)	298, 544
MhlI	GDGCHC	3 cut(s)	83, 199, 260
MluCI	AATT	7 cut(s)	8, 120, 245, 365, 370, 384, 621
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	8 cut(s)	125, 126, 155, 226, 344, 424, 508, 557
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	2 cut(s)	471, 483
MspA1I	CMGCKG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	2 cut(s)	108, 149
MwoI	GCNNNNNNNGC	2 cut(s)	584, 635
NdeII	GATC	2 cut(s)	298, 544
NlaIII	CATG	4 cut(s)	203, 437, 470, 488
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	235, 580
PagI	TCATGA	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	105, 129, 502, 628
PleI	GAGTC	1 cut(s)	438
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	438
Ppu21I	YACGTR	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	351
PspCI	CACGTG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	446
PstNI	CAGNNNCTG	2 cut(s)	394, 500
RseI	CAYNNNNRTG	2 cut(s)	471, 483
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	4 cut(s)	104, 128, 501, 627
Sau3AI	GATC	2 cut(s)	298, 544
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	3 cut(s)	83, 199, 260
SetI	ASST	7 cut(s)	24, 237, 270, 343, 393, 502, 640
SfaNI	GCATC	3 cut(s)	487, 517, 565
SfcI	CTRYAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	2 cut(s)	471, 483
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	7 cut(s)	8, 120, 245, 365, 370, 384, 621
SsiI	CCGC	3 cut(s)	130, 137, 585
StyD4I	CCNGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	86, 96
TasI	AATT	7 cut(s)	8, 120, 245, 365, 370, 384, 621
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	235, 580
TseI	GCWGC	4 cut(s)	103, 127, 500, 626
Tsp45I	GTSAC	2 cut(s)	235, 580
TspDTI	ATGAA	2 cut(s)	450, 633
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	4 cut(s)	8, 120, 245, 370
XmiI	GTMKAC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.