Rh1BG088300

DNA repair REX1-B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008780
Physical Location & Seq
Reverse (-)
13989220 .. 13990606
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG088300.1

Sequence Viewer

Length: 654 bp
ATGGAAGAATTTGAGAAGAAGTTAACAATTAGAGACGACGGCGACGGCGACGGCGACGCAGTAATGGAAGCAGAAGAAGAAGAAGAAGCTAAGAAGGTGTCCACCGTTGAATTGCTTCGCGAATTCCTTGGAATTCAGCAGCGCAGAGCAGAAGCATACACCAAGCTCAGAACGGGGTTCGCCCACTATATGGAGTCTTCATCATCTTCCTCTGCCGAGTCCGCCTATCAAACGCTTTGCGGCGACGTCACCCAGGAATTCAACGATTGCTCTAGGCAAGTCCTTCACATGGAGTCGCTTTTTCTGGGTCCTGATTATGGCAGACTTGATTTAGCCCATCTCCTCAGAGCTGTTCAGACGCATGAGAAGCAGAAATTGAACCTGACGGCGACACTTCAGTTGTTGAAGAAGGCTGGTAGACCCTCGGAGCGTCTAGTGAGTCATGAAAATTGCAGATTTGAGAAACCAATGGAGCATCAGTGTGTGCATCTCCATGAGATAACAGAAGCGGCTGGAACTGAAGAAGCAGAAGCCAACGCCCAGTATGATAATGATCTCAAGGATGCCATTCGAGGGGTGCAGGATTCTGTCACTGCTATAAATGAACATTTGGAAGAAGTCAGATATGAAATTGCTGCCCTTGAATCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_repr_REX1B

Protein Analysis

217

Amino Acids

24.55

Weight (kDa)

4.78

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_repr_REX1B PF14966 37 - 136 6.2e-29 DNA repair REX1-B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 190
AccI GTMKAC 1 cut(s) 418
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 222, 240, 509
AcsI RAATTY 4 cut(s) 8, 122, 132, 257
AcuI CTGAAG 2 cut(s) 380, 540
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 4 cut(s) 190, 289, 317, 573
AgsI TTSAA 5 cut(s) 110, 262, 379, 406, 644
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 89, 166, 350
AluI AGCT 3 cut(s) 89, 166, 350
Alw26I GTCTC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 139, 635
ApoI RAATTY 4 cut(s) 8, 122, 132, 257
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 151, 622
BccI CCATC 1 cut(s) 345
BceAI ACGGC 4 cut(s) 55, 61, 67, 402
BciT130I CCWGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 273, 434
BisI GCNGC 4 cut(s) 140, 241, 510, 636
BlsI GCNGC 4 cut(s) 141, 242, 511, 637
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 254
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 3 cut(s) 484, 496, 553
BmuI ACTGGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 127, 252, 423
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 289, 317, 573
Bse1I ACTGG 1 cut(s) 541
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 3 cut(s) 127, 252, 423
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 4 cut(s) 190, 289, 317, 573
BseMII CTCAG 2 cut(s) 181, 358
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 151, 622
BsgI GTGCAG 1 cut(s) 599
Bsh1236I CGCG 1 cut(s) 120
BslI CCNNNNNNNGG 4 cut(s) 190, 289, 317, 573
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 553
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 3 cut(s) 222, 240, 509
BspCNI CTCAG 2 cut(s) 180, 357
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 127, 252, 423
BssMI GATC 1 cut(s) 553
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 90, 167, 344
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 2 cut(s) 221, 367
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 151, 622
BstV2I GAAGAC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 568
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 485, 591
BtuMI TCGCGA 1 cut(s) 120
CciI TCATGA 1 cut(s) 442
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 308
CseI GACGC 3 cut(s) 65, 367, 419
CviAII CATG 4 cut(s) 289, 362, 443, 494
CviJI RGCY 7 cut(s) 89, 166, 335, 350, 413, 512, 533
CviKI_1 RGCY 7 cut(s) 89, 166, 335, 350, 413, 512, 533
DdeI CTNAG 3 cut(s) 90, 167, 344
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
EciI GGCGGA 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 380, 540
EcoO109I RGGNCCY 1 cut(s) 308
EcoRI GAATTC 3 cut(s) 122, 132, 257
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 4 cut(s) 292, 365, 446, 497
FatI CATG 4 cut(s) 288, 361, 442, 493
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 140, 241, 510, 636
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 4 cut(s) 140, 241, 510, 636
FspBI CTAG 2 cut(s) 273, 434
GlaI GCGC 1 cut(s) 143
GluI GCNGC 4 cut(s) 140, 241, 510, 636
HgaI GACGC 3 cut(s) 65, 367, 419
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 4 cut(s) 292, 365, 446, 497
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 6 cut(s) 194, 218, 293, 439, 584, 644
HpaI GTTAAC 1 cut(s) 24
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 3 cut(s) 24, 102, 419
Hpy188I TCNGA 6 cut(s) 170, 347, 357, 427, 623, 649
Hpy188III TCNNGA 3 cut(s) 119, 311, 443
Hpy8I GTNNAC 3 cut(s) 24, 102, 419
Hpy99I CGWCG 5 cut(s) 41, 47, 53, 59, 248
HpyAV CCTTC 3 cut(s) 88, 293, 403
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 453, 487, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 367
HpyF3I CTNAG 3 cut(s) 90, 167, 344
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 4 cut(s) 292, 365, 446, 497
HspAI GCGC 1 cut(s) 142
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 2 cut(s) 427, 472
LpnPI CCDG 9 cut(s) 239, 266, 290, 324, 395, 399, 498, 554, 566
Lsp1109I GCAGC 2 cut(s) 151, 622
LweI GCATC 3 cut(s) 484, 496, 553
MaeI CTAG 2 cut(s) 273, 434
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 247, 589
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MluCI AATT 9 cut(s) 8, 27, 110, 122, 132, 257, 374, 448, 630
MlyI GAGTC 4 cut(s) 203, 227, 302, 448
MnlI CCTC 4 cut(s) 220, 353, 433, 566
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 480, 492
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 221, 367
NdeII GATC 1 cut(s) 553
NlaIII CATG 4 cut(s) 292, 365, 446, 497
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 247, 589
NruI TCGCGA 1 cut(s) 120
PagI TCATGA 1 cut(s) 442
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 51
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 584, 644
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 4 cut(s) 141, 242, 511, 637
PleI GAGTC 4 cut(s) 202, 226, 301, 447
PpsI GAGTC 4 cut(s) 202, 226, 301, 447
PpuMI RGGWCCY 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 308
PspPPI RGGWCCY 1 cut(s) 308
RruI TCGCGA 1 cut(s) 120
RseI CAYNNNNRTG 2 cut(s) 480, 492
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 4 cut(s) 140, 241, 510, 636
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 4 cut(s) 203, 227, 302, 448
ScrFI CCNGG 1 cut(s) 254
SetI ASST 6 cut(s) 91, 99, 168, 249, 352, 384
SfaNI GCATC 3 cut(s) 484, 496, 553
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 480, 492
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 9 cut(s) 8, 27, 110, 122, 132, 257, 374, 448, 630
SsiI CCGC 3 cut(s) 222, 240, 509
SspMI CTAG 2 cut(s) 273, 434
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 571
TasI AATT 9 cut(s) 8, 27, 110, 122, 132, 257, 374, 448, 630
TauI GCSGC 2 cut(s) 243, 512
TfiI GAWTC 2 cut(s) 584, 644
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 485, 598
TseFI GTSAC 2 cut(s) 247, 589
TseI GCWGC 2 cut(s) 139, 635
Tsp45I GTSAC 2 cut(s) 247, 589
TspDTI ATGAA 4 cut(s) 189, 459, 618, 642
TspRI CASTG 2 cut(s) 485, 598
Van91I CCANNNNNTGG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 4 cut(s) 8, 122, 132, 257
XmiI GTMKAC 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 273, 434
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.