Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008780

Physical Location & Seq

Genomic Coordinates Forward (+)

15100526 .. 15102795

Gene Structure 2270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0092600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCTGAGACTGTGAATACTGGAAAAAAGAGAGGCAGAAATGGCTGGAAAGAATCACAAAGGAAAGGGGGACATTCTGACCAATGTTCAGAGTCCACTCCTCAAGTAGAGAATCCTAATCTTACTGACAATGGAAAGAAAAAGAGAGGTAGAACATGTTTGCAAGTAATGGCTACGGGAGAAAATCAACGAAAATTAGTTGAATGGAATGAAAGAGGGCAACCTGTTGGGGAAGTCTCCAAAAGATTCTCATCAACTATTGGCGTGATAGTACGAGAACAAGTGCCAATTAACATTGAAACTTGGCATAAAGTGACGGATGGGGCTAAGAACAATCTTTGGAAACTTTTGATGCAAAAGTACATAGTGGATATCTGTTACAAGCCCTTCATCTTACAACAAATGGGAAAATTATGGAGATCTTGGAAATCTGACCTCTCAGTTGACATAAGGAAAATTCTGGAATCGAAGTCAACTAAGACAGAGAGAACACATCTATTTGCCAAACTTAAGCCGAATGATGTGAACTTAGAAGAGTGGGATCAATTCGAAAAAAGTGAGAAAATGAGAACAATAAGATCAAAGCAGACTCTAACCCACATAATGAGTCGAAAAGGGTATGCGCGGTTGGAAAATGAAGATAACGAGAAAAATCCTGATAAGCCTTTGACGAGGCCAAAACTATGGATTAAAGGACATGAGCAGAAGAAAAGCAAAAATGATATTGTTGCTACTAAAATTGCTGAGATACAAGCTAAGATTGATGAGAATCCACCTAGTGAAGAACCAGTTCCTGTAAAAGATGATATATTGACTCAAGTGCTTGGTAAGGAGTGCCCTGGTCGTGTTAGGGGTCTTGGAGCAGGGGTTACACCTTCAAAGGTAGATGTTCAACCACAAAGTGATACAAAATATCAAAAACTAGAGGCTGCACTGAAGGCTGTGAATGAGCGTGCAAAAATGTTGGAGGATATAATAGCTTCCAAGTTGGGGATAAACTTGAACTCAAATGGTGATGTTGATGTAAGTGCGGGCCATGCAGCTGAAATTTCCAAGAATAAAGTACATGATAATGCAAGTGCAAATCGAGAGGTTGAGCGAGTGGCTGCTGGAACCCCAAAGTCTGGACAAGACAGCACCAAGCATTCAATTAATGACAAGTGCAAGTTGCTAAATTGGGATGGCAGCAATGAAGTAGTGGCAAGAGGTTCAATCTCAGCTATATATCCAAAATCAGCTGTGCATGGGTATACACTTGGTCCTGATTGTTATAGGATTTCCATTGAAGATGTATTTGTGCCTAGAGCAGAATTTTATCGCACTGAGTCTGAATTTGCGAACCTTGACGATGCACGTGGAAGCACAATTGCTTGGCCAATAAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_repr_REX1B

Protein Analysis

462

Amino Acids

52.01

Weight (kDa)

9.26

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	184 - 292	1.1e-12	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	386 - 462	9.5e-09	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04910
fragaria_vesca	FvH4_7g05010 FvH4_7g05010
malus_domestica	MD02G1265000.v1.1
prunus_persica	Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1 Prupe.2G061000_v2.0.a1
pyrus_communis	pycom02g22640 pycom02g22690
rosa_chinensis	RchiOBHm_Chr1g0331321
rosa_laevigata	RLG00000029744
rosa_multiflora	Rmu_sc0005956.1_g000013 Rmu_sc0011642.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319240
rosa_rugosa	Rorug01G0092600
rosa_samantha	Rh1AG117500 Rh1BG088000 Rh1BG088300 Rh1CG112400 Rh1DG121300
rosa_wichuraiana	Rw1G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1124
AccI	GTMKAC	1 cut(s)	1250
AccII	CGCG	1 cut(s)	625
AciI	CCGC	2 cut(s)	625, 1031
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	1 cut(s)	1373
AcsI	RAATTY	4 cut(s)	456, 1047, 1310, 1331
AcuI	CTGAAG	1 cut(s)	956
AcvI	CACGTG	1 cut(s)	1355
AdeI	CACNNNGTG	2 cut(s)	779, 902
AfaI	GTAC	4 cut(s)	273, 362, 1065, 1385
AfiI	CCNNNNNNNGG	2 cut(s)	990, 1124
AflII	CTTAAG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	8 cut(s)	203, 299, 879, 893, 1003, 1149, 1212, 1286
AjnI	CCWGG	1 cut(s)	838
AluBI	AGCT	5 cut(s)	755, 980, 1043, 1220, 1238
AluI	AGCT	5 cut(s)	755, 980, 1043, 1220, 1238
Alw26I	GTCTC	2 cut(s)	2, 241
AlwI	GGATC	1 cut(s)	549
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	3 cut(s)	674, 1033, 1373
ApeKI	GCWGC	4 cut(s)	929, 1040, 1106, 1185
ApoI	RAATTY	4 cut(s)	456, 1047, 1310, 1331
AseI	ATTAAT	1 cut(s)	1152
Asp700I	GAANNNNTTC	1 cut(s)	789
AspLEI	GCGC	1 cut(s)	625
AspS9I	GGNCC	2 cut(s)	1033, 1259
AsuHPI	GGTGA	1 cut(s)	1025
AsuII	TTCGAA	1 cut(s)	549
AvaII	GGWCC	1 cut(s)	1259
BaeGI	GKGCMC	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	1375
BbrPI	CACGTG	1 cut(s)	1355
BbvI	GCAGC	4 cut(s)	916, 1052, 1093, 1197
BccI	CCATC	2 cut(s)	314, 1175
BciT130I	CCWGG	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	2, 241
BfaI	CTAG	3 cut(s)	777, 923, 1302
BfrI	CTTAAG	1 cut(s)	509
BglII	AGATCT	1 cut(s)	419
BisI	GCNGC	4 cut(s)	930, 1041, 1107, 1186
BlsI	GCNGC	4 cut(s)	931, 1042, 1108, 1187
BmcAI	AGTACT	1 cut(s)	1385
Bme1390I	CCNGG	1 cut(s)	840
Bme18I	GGWCC	1 cut(s)	1259
BmgT120I	GGNCC	2 cut(s)	1033, 1259
BmiI	GGNNCC	1 cut(s)	1114
BmrFI	CCNGG	1 cut(s)	840
BmsI	GCATC	2 cut(s)	342, 1339
Bpu14I	TTCGAA	1 cut(s)	549
BpuEI	CTTGAG	2 cut(s)	87, 801
BsaAI	YACGTR	1 cut(s)	1355
BsaBI	GATNNNNATC	2 cut(s)	250, 768
BsaJI	CCNNGG	1 cut(s)	838
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	990, 1124
Bse1I	ACTGG	2 cut(s)	25, 788
Bse3DI	GCAATG	1 cut(s)	1195
Bse8I	GATNNNNATC	2 cut(s)	250, 768
BseBI	CCWGG	1 cut(s)	840
BseDI	CCNNGG	1 cut(s)	838
BseGI	GGATG	2 cut(s)	325, 1186
BseJI	GATNNNNATC	2 cut(s)	250, 768
BseLI	CCNNNNNNNGG	2 cut(s)	990, 1124
BseMI	GCAATG	1 cut(s)	1195
BseMII	CTCAG	4 cut(s)	453, 735, 1230, 1314
BseNI	ACTGG	2 cut(s)	25, 788
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	4 cut(s)	916, 1052, 1093, 1197
BsgI	GTGCAG	1 cut(s)	915
Bsh1236I	CGCG	1 cut(s)	625
BshFI	GGCC	3 cut(s)	676, 1035, 1375
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	990, 1124
BsmAI	GTCTC	2 cut(s)	2, 241
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	1144
BsnI	GGCC	3 cut(s)	676, 1035, 1375
Bsp119I	TTCGAA	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp143I	GATC	3 cut(s)	419, 541, 578
BspACI	CCGC	2 cut(s)	625, 1031
BspANI	GGCC	3 cut(s)	676, 1035, 1375
BspCNI	CTCAG	4 cut(s)	452, 736, 1229, 1315
BspFNI	CGCG	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	1114
BspPI	GGATC	1 cut(s)	549
BspT104I	TTCGAA	1 cut(s)	549
BspTI	CTTAAG	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	1195
BsrI	ACTGG	2 cut(s)	25, 788
BssECI	CCNNGG	1 cut(s)	838
BssMI	GATC	3 cut(s)	419, 541, 578
BssNAI	GTATAC	1 cut(s)	1251
Bst1107I	GTATAC	1 cut(s)	1251
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	528
BstAFI	CTTAAG	1 cut(s)	509
BstBAI	YACGTR	1 cut(s)	1355
BstBI	TTCGAA	1 cut(s)	549
BstC8I	GCNNGC	2 cut(s)	954, 1033
BstDEI	CTNAG	9 cut(s)	6, 327, 439, 477, 529, 744, 756, 1216, 1323
BstF5I	GGATG	2 cut(s)	325, 1186
BstFNI	CGCG	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	3 cut(s)	422, 544, 581
BstMAI	GTCTC	2 cut(s)	2, 241
BstMBI	GATC	3 cut(s)	419, 541, 578
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 938, 1037
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	838
BstSLI	GKGCMC	1 cut(s)	839
BstUI	CGCG	1 cut(s)	625
BstV1I	GCAGC	4 cut(s)	916, 1052, 1093, 1197
BstX2I	RGATCY	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	419
BstZ17I	GTATAC	1 cut(s)	1251
BsuRI	GGCC	3 cut(s)	676, 1035, 1375
BtsCI	GGATG	2 cut(s)	325, 1186
BtsIMutI	CAGTG	2 cut(s)	932, 1320
Cac8I	GCNNGC	2 cut(s)	954, 1033
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	1 cut(s)	625
Cfr13I	GGNCC	2 cut(s)	1033, 1259
Csp6I	GTAC	4 cut(s)	272, 361, 1064, 1384
CviAII	CATG	5 cut(s)	156, 698, 1037, 1067, 1244
CviQI	GTAC	4 cut(s)	272, 361, 1064, 1384
DdeI	CTNAG	9 cut(s)	6, 327, 439, 477, 529, 744, 756, 1216, 1323
DpnI	GATC	3 cut(s)	421, 543, 580
DpnII	GATC	3 cut(s)	419, 541, 578
DraIII	CACNNNGTG	2 cut(s)	779, 902
EaeI	YGGCCR	1 cut(s)	1373
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	1259
Eco57I	CTGAAG	1 cut(s)	956
Eco72I	CACGTG	1 cut(s)	1355
EcoRII	CCWGG	1 cut(s)	838
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	5 cut(s)	159, 701, 1040, 1070, 1247
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	5 cut(s)	155, 697, 1036, 1066, 1243
FauI	CCCGC	1 cut(s)	1024
FblI	GTMKAC	1 cut(s)	1250
Fnu4HI	GCNGC	4 cut(s)	930, 1041, 1107, 1186
FokI	GGATG	2 cut(s)	332, 1193
Fsp4HI	GCNGC	4 cut(s)	930, 1041, 1107, 1186
FspBI	CTAG	3 cut(s)	777, 923, 1302
GlaI	GCGC	1 cut(s)	624
GluI	GCNGC	4 cut(s)	930, 1041, 1107, 1186
HaeIII	GGCC	3 cut(s)	676, 1035, 1375
HhaI	GCGC	1 cut(s)	625
Hin1II	CATG	5 cut(s)	159, 701, 1040, 1070, 1247
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HincII	GTYRAC	2 cut(s)	445, 474
HindII	GTYRAC	2 cut(s)	445, 474
HphI	GGTGA	1 cut(s)	1025
Hpy166II	GTNNAC	5 cut(s)	96, 445, 474, 526, 1251
Hpy188I	TCNGA	4 cut(s)	79, 91, 433, 1330
Hpy188III	TCNNGA	5 cut(s)	461, 656, 1088, 1125, 1262
Hpy8I	GTNNAC	5 cut(s)	96, 445, 474, 526, 1251
HpyAV	CCTTC	3 cut(s)	397, 885, 931
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	1354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 938, 1037
HpyF3I	CTNAG	9 cut(s)	6, 327, 439, 477, 529, 744, 756, 1216, 1323
HpySE526I	ACGT	1 cut(s)	1354
Hsp92II	CATG	5 cut(s)	159, 701, 1040, 1070, 1247
HspAI	GCGC	1 cut(s)	623
Kzo9I	GATC	3 cut(s)	419, 541, 578
LmnI	GCTCC	1 cut(s)	860
Lsp1109I	GCAGC	4 cut(s)	916, 1052, 1093, 1197
LweI	GCATC	2 cut(s)	342, 1339
MaeI	CTAG	3 cut(s)	777, 923, 1302
MaeII	ACGT	1 cut(s)	1354
MaeIII	GTNAC	3 cut(s)	313, 377, 868
MalI	GATC	3 cut(s)	421, 543, 580
MboI	GATC	3 cut(s)	419, 541, 578
MboII	GAAGA	5 cut(s)	545, 650, 718, 794, 1298
MfeI	CAATTG	1 cut(s)	1365
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	839
MlsI	TGGCCA	1 cut(s)	1375
MluNI	TGGCCA	1 cut(s)	1375
MlyI	GAGTC	5 cut(s)	101, 583, 616, 808, 1334
MmeI	TCCRAC	2 cut(s)	609, 945
Mox20I	TGGCCA	1 cut(s)	1375
MroXI	GAANNNNTTC	1 cut(s)	789
MscI	TGGCCA	1 cut(s)	1375
MseI	TTAA	4 cut(s)	291, 510, 690, 1152
MslI	CAYNNNNRTG	1 cut(s)	1071
Msp20I	TGGCCA	1 cut(s)	1375
MspA1I	CMGCKG	2 cut(s)	1043, 1238
MspCI	CTTAAG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	840
MunI	CAATTG	1 cut(s)	1365
Mva1269I	GAATGC	1 cut(s)	1144
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	1 cut(s)	625
MwoI	GCNNNNNNNGC	3 cut(s)	42, 938, 1037
NdeII	GATC	3 cut(s)	419, 541, 578
NlaIII	CATG	5 cut(s)	159, 701, 1040, 1070, 1247
NlaIV	GGNNCC	1 cut(s)	1114
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	549
PciI	ACATGT	1 cut(s)	155
PctI	GAATGC	1 cut(s)	1144
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	5 cut(s)	53, 112, 246, 464, 769
PflMI	CCANNNNNTGG	1 cut(s)	1124
PkrI	GCNGC	4 cut(s)	931, 1042, 1108, 1187
PleI	GAGTC	5 cut(s)	100, 583, 615, 808, 1333
PmaCI	CACGTG	1 cut(s)	1355
PmlI	CACGTG	1 cut(s)	1355
PpsI	GAGTC	5 cut(s)	100, 583, 615, 808, 1333
Ppu21I	YACGTR	1 cut(s)	1355
PscI	ACATGT	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	1152
Psp6I	CCWGG	1 cut(s)	838
PspCI	CACGTG	1 cut(s)	1355
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	1 cut(s)	1114
PspPI	GGNCC	2 cut(s)	1033, 1259
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	2 cut(s)	1043, 1238
RsaI	GTAC	4 cut(s)	273, 362, 1065, 1385
RsaNI	GTAC	4 cut(s)	272, 361, 1064, 1384
RseI	CAYNNNNRTG	1 cut(s)	1071
SaqAI	TTAA	4 cut(s)	291, 510, 690, 1152
SatI	GCNGC	4 cut(s)	930, 1041, 1107, 1186
Sau3AI	GATC	3 cut(s)	419, 541, 578
Sau96I	GGNCC	2 cut(s)	1033, 1259
ScaI	AGTACT	1 cut(s)	1385
SchI	GAGTC	5 cut(s)	101, 583, 616, 808, 1334
ScrFI	CCNGG	1 cut(s)	840
SduI	GDGCHC	1 cut(s)	839
SfaNI	GCATC	2 cut(s)	342, 1339
SfuI	TTCGAA	1 cut(s)	549
SinI	GGWCC	1 cut(s)	1259
SmiMI	CAYNNNNRTG	1 cut(s)	1071
SmlI	CTYRAG	3 cut(s)	102, 509, 816
SmoI	CTYRAG	3 cut(s)	102, 509, 816
SsiI	CCGC	2 cut(s)	625, 1031
SspMI	CTAG	3 cut(s)	777, 923, 1302
StyD4I	CCNGG	1 cut(s)	838
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	1357
TaqI	TCGA	4 cut(s)	467, 549, 610, 1087
TatI	WGTACW	3 cut(s)	360, 1063, 1383
TfiI	GAWTC	5 cut(s)	53, 112, 246, 464, 769
Tru1I	TTAA	4 cut(s)	291, 510, 690, 1152
Tru9I	TTAA	4 cut(s)	291, 510, 690, 1152
TscAI	CASTG	2 cut(s)	939, 1327
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	4 cut(s)	929, 1040, 1106, 1185
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	4 cut(s)	225, 379, 651, 1206
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	939, 1327
Van91I	CCANNNNNTGG	1 cut(s)	1124
Vha464I	CTTAAG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	1259
VspI	ATTAAT	1 cut(s)	1152
XapI	RAATTY	4 cut(s)	456, 1047, 1310, 1331
XceI	RCATGY	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	1250
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	3 cut(s)	777, 923, 1302
ZrmI	AGTACT	1 cut(s)	1385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.