Rroxscaffold_4G00319240

DNA repair REX1-B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008780
Physical Location & Seq
Forward (+)
46804713 .. 46806726
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319240.1

Sequence Viewer

Length: 651 bp
ATGGAAGAATTTGAGAAGAAGTTAACAATTAGAGACGACGGCGACGGCGACGAAGTAATGGAAGCAGAAGAAGAAGAAGAAGAAGCTAAGAAGGTGTCCACCGTTGAATTGCTTCGCGAATTCCTTGGAATTCAGCAGCGCAGAGCAGAAGCATACACCAAGCTCAGAACGGGGTTCGCCCACTATATGGAGTCTTCATCATCTTCCTCTGCCGAGTCCGCCTATCAAAAGCTTTGTGGCGACGTCACCCAGGAATTCAACGATTGCTCTAGGCAAGTCCTTCACATGGAATCGCTTTTCCTGGGTCCTGATTATGGCAGACTCGATTTAGCCCACCTGCTCAGAGCTGTTCAGACGCATGAGAAGGAGAAACTGAACCTGACGGCGACACTTCAGTTGTTGAAGAAGGCTGGTAGACCCTCGGAGCGTCTAGTGAGTCATGAAAATTGCAGATTTGAGAAACCAATGGAGCATCAGTGTGTGCATCTCCATGAGATAACAGAAGCGGCTGGAACTGAAGAAGCAGAAGCCAACGCCCAGTATGATAATGATCTCAAGGAAGCCATTCGAGGGGTGCAGGATTCTGTGACTGCTATAAACGAACATTTGGAAGAAGTCAGATATGAAATTGCTGCCCTTGAATCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_repr_REX1B

Protein Analysis

216

Amino Acids

24.6

Weight (kDa)

4.77

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_repr_REX1B PF14966 36 - 135 3.7e-29 DNA repair REX1-B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 345
AatII GACGTC 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 415
AccII CGCG 1 cut(s) 117
AciI CCGC 2 cut(s) 219, 506
AcsI RAATTY 4 cut(s) 8, 119, 129, 254
AcuI CTGAAG 2 cut(s) 377, 537
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 4 cut(s) 187, 286, 314, 570
AgsI TTSAA 4 cut(s) 107, 259, 403, 641
AjnI CCWGG 2 cut(s) 249, 300
AluBI AGCT 4 cut(s) 86, 163, 232, 347
AluI AGCT 4 cut(s) 86, 163, 232, 347
Alw26I GTCTC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 136, 632
ApoI RAATTY 4 cut(s) 8, 119, 129, 254
Asp700I GAANNNNTTC 2 cut(s) 111, 564
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 148, 619
BceAI ACGGC 3 cut(s) 55, 61, 399
BciT130I CCWGG 2 cut(s) 251, 302
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 270, 431
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 3 cut(s) 137, 507, 633
BlsI GCNGC 3 cut(s) 138, 508, 634
Bme1390I CCNGG 2 cut(s) 251, 302
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 2 cut(s) 251, 302
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 2 cut(s) 481, 493
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 539
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 124, 249, 301, 420
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 286, 314, 570
Bse1I ACTGG 1 cut(s) 538
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 2 cut(s) 251, 302
BseDI CCNNGG 4 cut(s) 124, 249, 301, 420
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 4 cut(s) 187, 286, 314, 570
BseMII CTCAG 2 cut(s) 178, 355
BseNI ACTGG 1 cut(s) 538
BseXI GCAGC 2 cut(s) 148, 619
BsgI GTGCAG 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 117
BslI CCNNNNNNNGG 4 cut(s) 187, 286, 314, 570
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 550
Bsp68I TCGCGA 1 cut(s) 117
BspACI CCGC 2 cut(s) 219, 506
BspCNI CTCAG 2 cut(s) 177, 354
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 306
BspMI ACCTGC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 4 cut(s) 124, 249, 301, 420
BssMI GATC 1 cut(s) 550
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 2 cut(s) 251, 302
Bst4CI ACNGT 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 87, 164, 341
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 1 cut(s) 553
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 550
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 2 cut(s) 251, 302
BstSCI CCNGG 2 cut(s) 249, 300
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 148, 619
BstV2I GAAGAC 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 482
BtuMI TCGCGA 1 cut(s) 117
BveI ACCTGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 2 cut(s) 364, 416
CviAII CATG 4 cut(s) 286, 359, 440, 491
CviJI RGCY 9 cut(s) 86, 163, 232, 332, 347, 410, 509, 530, 563
CviKI_1 RGCY 9 cut(s) 86, 163, 232, 332, 347, 410, 509, 530, 563
DdeI CTNAG 3 cut(s) 87, 164, 341
DpnI GATC 1 cut(s) 552
DpnII GATC 1 cut(s) 550
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 377, 537
EcoO109I RGGNCCY 1 cut(s) 305
EcoRI GAATTC 3 cut(s) 119, 129, 254
EcoRII CCWGG 2 cut(s) 249, 300
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 4 cut(s) 289, 362, 443, 494
FatI CATG 4 cut(s) 285, 358, 439, 490
FblI GTMKAC 1 cut(s) 415
Fnu4HI GCNGC 3 cut(s) 137, 507, 633
Fsp4HI GCNGC 3 cut(s) 137, 507, 633
FspBI CTAG 2 cut(s) 270, 431
GlaI GCGC 1 cut(s) 140
GluI GCNGC 3 cut(s) 137, 507, 633
HgaI GACGC 2 cut(s) 364, 416
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 4 cut(s) 289, 362, 443, 494
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 7 cut(s) 191, 215, 290, 321, 436, 581, 641
HpaI GTTAAC 1 cut(s) 24
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 3 cut(s) 24, 99, 416
Hpy188I TCNGA 6 cut(s) 167, 344, 354, 424, 620, 646
Hpy188III TCNNGA 3 cut(s) 116, 308, 440
Hpy8I GTNNAC 3 cut(s) 24, 99, 416
Hpy99I CGWCG 4 cut(s) 41, 47, 53, 245
HpyAV CCTTC 4 cut(s) 85, 290, 358, 400
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 450, 484, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 3 cut(s) 87, 164, 341
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 4 cut(s) 289, 362, 443, 494
HspAI GCGC 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 550
LmnI GCTCC 2 cut(s) 424, 469
Lsp1109I GCAGC 2 cut(s) 148, 619
LweI GCATC 2 cut(s) 481, 493
MaeI CTAG 2 cut(s) 270, 431
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 244, 586
MalI GATC 1 cut(s) 552
MboI GATC 1 cut(s) 550
MluCI AATT 8 cut(s) 8, 27, 107, 119, 129, 254, 445, 627
MlyI GAGTC 4 cut(s) 200, 224, 315, 445
MnlI CCTC 3 cut(s) 217, 430, 563
MroXI GAANNNNTTC 2 cut(s) 111, 564
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 477, 489
MspR9I CCNGG 2 cut(s) 251, 302
MvaI CCWGG 2 cut(s) 251, 302
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 1 cut(s) 550
NlaIII CATG 4 cut(s) 289, 362, 443, 494
NlaIV GGNNCC 1 cut(s) 306
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 244, 586
NruI TCGCGA 1 cut(s) 117
PagI TCATGA 1 cut(s) 439
PaqCI CACCTGC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 111, 564
PfeI GAWTC 3 cut(s) 290, 581, 641
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 3 cut(s) 138, 508, 634
PleI GAGTC 4 cut(s) 199, 223, 315, 444
PpsI GAGTC 4 cut(s) 199, 223, 315, 444
PpuMI RGGWCCY 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 249, 300
PspGI CCWGG 2 cut(s) 249, 300
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 305
PspPPI RGGWCCY 1 cut(s) 305
RruI TCGCGA 1 cut(s) 117
RseI CAYNNNNRTG 2 cut(s) 477, 489
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 137, 507, 633
Sau3AI GATC 1 cut(s) 550
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 4 cut(s) 200, 224, 315, 445
ScrFI CCNGG 2 cut(s) 251, 302
SetI ASST 8 cut(s) 88, 96, 165, 234, 246, 339, 349, 381
SfaNI GCATC 2 cut(s) 481, 493
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 2 cut(s) 477, 489
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 8 cut(s) 8, 27, 107, 119, 129, 254, 445, 627
SsiI CCGC 2 cut(s) 219, 506
SspMI CTAG 2 cut(s) 270, 431
StyD4I CCNGG 2 cut(s) 249, 300
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 324, 568
TasI AATT 8 cut(s) 8, 27, 107, 119, 129, 254, 445, 627
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 3 cut(s) 290, 581, 641
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 2 cut(s) 244, 586
TseI GCWGC 2 cut(s) 136, 632
Tsp45I GTSAC 2 cut(s) 244, 586
TspDTI ATGAA 3 cut(s) 186, 456, 639
TspRI CASTG 1 cut(s) 482
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 4 cut(s) 8, 119, 129, 254
XmiI GTMKAC 1 cut(s) 415
XmnI GAANNNNTTC 2 cut(s) 111, 564
XspI CTAG 2 cut(s) 270, 431
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.