Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005275

Physical Location & Seq

Genomic Coordinates Forward (+)

1620458 .. 1622340

Gene Structure 1883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGAATCCTGCTCCGAATCTAGAATGTCGTATGTACGAATCGAGATACCCTGATGTAGACATGGCGGTGATGATTCAGGTGAAGACCATCGCTGACATGGGAGCTTACGTATCTCTCCTTGAATACAACAACATCGAAGGAATGATCCTGTTCTCCGAGCTCTCTCGCCGTCGGATTCGTAGTATCAGTAGCTTAATCAAGGTCGGTCGTACCGAGCCTGTTATGGTCCTTCGTGTCGATAGAGAGAGAGGTTACATTGATCTCAGTAAACGTAGGGTTAGTGATGAGGACAAAGAGGCTTGTGAGGAGAGGTATAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGCTGAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTAAACATCGGTTGGCCATTGTATAAGAAGCATGGACATGCTTTTGAGGCTTTCAAAATTGTTGTCACTGATCCTGATTCAGTTTTCGATGCTCTTACCCGAGAAGTTAAAGAAACTGGACCTGATGGTGTGGAGGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGAAGGACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTGATATTGAATTGAAGTGTTTTCAGTTTGATGGAGTTCTCCACATCAAGGAAGCCATGAAGAAGGCAGAGGCTGTAGGTACTGATGATTGTCCAGTCAAAATCAAGCTCGTTGCTCCACCACTTTATGTACTCACAACTCACACCCATTACAAGGAAAAAGGAATAGTGACTCTGAATAAAGCAATTGAAGCATGCATTACTGCAATTGAGGAACACAAGGGTAAACTTGTCGTTAAAGAAGGTGCTCGTGCGGTGAGTGAGCGTGATGACAAATTGCTTGCTGAGCACATGGCTAAGCTTAGAATGGATAATGAAGAAATGAGTGGTGATGAGGGAAGCGAAGATGAAGAAGAAGACACTGGAATGGGAGAAGTCGATATCGATGGAGGTAGCGGGATAATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005850 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010564 GO:0010948 GO:0019538 GO:0022402 GO:0031570 GO:0031571 GO:0032991 GO:0033290 GO:0033554 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043614 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0044877 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070993 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

ko03013 ko04138 ko04140 ko04141 ko04210 ko04932 ko05160 ko05162 ko05164 ko05168 map03013 map04138 map04140 map04141 map04210 map04932 map05160 map05162 map05164 map05168

Pfam Domains

Protein Families

EIF_2_alpha S1

Protein Analysis

344

Amino Acids

38.8

Weight (kDa)

5.23

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1	PF00575	25 - 92	7.7e-13	S1 RNA binding domain
EIF_2_alpha	PF07541	130 - 258	5.2e-32	Eukaryotic translation initiation factor 2 alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05470
fragaria_vesca	FvH4_6g15100 FvH4_7g25050
malus_domestica	MD01G1157300.v1.1 MD07G1226100.v1.1
prunus_persica	Prupe.2G255200_v2.0.a1
pyrus_communis	pycom01g17410 pycom07g20450
rosa_chinensis	RchiOBHm_Chr1g0370911 RchiOBHm_Chr3g0468371
rosa_laevigata	RLG00000024436 RLG00000026999
rosa_multiflora	Rmu_co7996168.1_g000001 Rmu_sc0001018.1_g000002 Rmu_sc0004353.1_g000010 Rmu_sc0014003.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286130 Rroxscaffold_6G00412840
rosa_rugosa	Rorug01G0360200 Rorug03G0095000
rosa_samantha	Rh1AG370200 Rh1BG333800 Rh1CG347100 Rh1DG365000 Rh3AG142800 Rh3BG165200 Rh3DG164800
rosa_wichuraiana	Rw1G032580 Rw3G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	3 cut(s)	68, 878, 1020
AclWI	GGATC	2 cut(s)	142, 458
AcoI	YGGCCR	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	4 cut(s)	38, 214, 706, 756
AfiI	CCNNNNNNNGG	2 cut(s)	673, 778
AgsI	TTSAA	8 cut(s)	125, 448, 565, 580, 635, 640, 815, 1031
AluBI	AGCT	7 cut(s)	107, 163, 195, 331, 388, 733, 925
AluI	AGCT	7 cut(s)	107, 163, 195, 331, 388, 733, 925
Alw21I	GWGCWC	3 cut(s)	165, 874, 915
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	2 cut(s)	142, 458
AlwNI	CAGNNNCTG	1 cut(s)	698
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AspS9I	GGNCC	2 cut(s)	229, 512
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	5 cut(s)	82, 94, 541, 892, 965
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	2 cut(s)	229, 512
BalI	TGGCCA	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	873
BbsI	GAAGAC	2 cut(s)	92, 987
Bbv12I	GWGCWC	3 cut(s)	165, 874, 915
BccI	CCATC	4 cut(s)	98, 512, 650, 1004
BceAI	ACGGC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	699
BlpI	GCTNAGC	2 cut(s)	909, 921
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	2 cut(s)	229, 512
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	229, 512
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	472, 559
BpiI	GAAGAC	2 cut(s)	92, 987
Bpu1102I	GCTNAGC	2 cut(s)	909, 921
BpuMI	CCSGG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	1008
BsaAI	YACGTR	2 cut(s)	112, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	2 cut(s)	673, 778
Bse1I	ACTGG	3 cut(s)	514, 719, 991
BseCI	ATCGAT	1 cut(s)	1008
BseLI	CCNNNNNNNGG	2 cut(s)	673, 778
BseMII	CTCAG	3 cut(s)	280, 351, 900
BseNI	ACTGG	3 cut(s)	514, 719, 991
BseRI	GAGGAG	3 cut(s)	323, 398, 607
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	409
BshVI	ATCGAT	1 cut(s)	1008
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	3 cut(s)	165, 874, 915
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	673, 778
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	492
Bsp1286I	GDGCHC	3 cut(s)	165, 874, 915
Bsp143I	GATC	3 cut(s)	147, 262, 463
Bsp1720I	GCTNAGC	2 cut(s)	909, 921
BspACI	CCGC	3 cut(s)	68, 878, 1020
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	3 cut(s)	279, 352, 901
BspDI	ATCGAT	1 cut(s)	1008
BspPI	GGATC	2 cut(s)	142, 458
BsrI	ACTGG	3 cut(s)	514, 719, 991
BssMI	GATC	3 cut(s)	147, 262, 463
BssSI	CACGAG	1 cut(s)	873
Bst2BI	CACGAG	1 cut(s)	873
Bst4CI	ACNGT	1 cut(s)	367
BstBAI	YACGTR	2 cut(s)	112, 394
BstC8I	GCNNGC	3 cut(s)	329, 820, 906
BstDEI	CTNAG	5 cut(s)	266, 360, 909, 921, 926
BstEII	GGTNACC	1 cut(s)	529
BstKTI	GATC	3 cut(s)	150, 265, 466
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	3 cut(s)	147, 262, 463
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 440, 815, 910
BstNSI	RCATGY	2 cut(s)	434, 822
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	1 cut(s)	699
BstSNI	TACGTA	2 cut(s)	112, 394
BstV2I	GAAGAC	2 cut(s)	92, 987
Bsu15I	ATCGAT	1 cut(s)	1008
BsuRI	GGCC	1 cut(s)	409
BsuTUI	ATCGAT	1 cut(s)	1008
BtgZI	GCGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	459, 984
Cac8I	GCNNGC	3 cut(s)	329, 820, 906
CaiI	CAGNNNCTG	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	229, 512
ClaI	ATCGAT	1 cut(s)	1008
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	4 cut(s)	37, 213, 705, 755
CviAII	CATG	9 cut(s)	64, 100, 346, 353, 425, 431, 682, 819, 916
CviQI	GTAC	4 cut(s)	37, 213, 705, 755
DdeI	CTNAG	5 cut(s)	266, 360, 909, 921, 926
DpnI	GATC	3 cut(s)	149, 264, 465
DpnII	GATC	3 cut(s)	147, 262, 463
EaeI	YGGCCR	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	163
Eco105I	TACGTA	2 cut(s)	112, 394
Eco24I	GRGCYC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	1006
Eco47I	GGWCC	2 cut(s)	229, 512
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	576
Eco88I	CYCGRG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	1006
EcoT22I	ATGCAT	2 cut(s)	574, 824
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	9 cut(s)	67, 103, 349, 356, 428, 434, 685, 822, 919
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	9 cut(s)	63, 99, 345, 352, 424, 430, 681, 818, 915
FauI	CCCGC	1 cut(s)	1013
FblI	GTMKAC	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	409
HapII	CCGG	1 cut(s)	545
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	9 cut(s)	67, 103, 349, 356, 428, 434, 685, 822, 919
HindIII	AAGCTT	2 cut(s)	329, 923
HinfI	GANTC	8 cut(s)	7, 19, 41, 76, 178, 470, 619, 796
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	5 cut(s)	82, 94, 541, 892, 965
Hpy166II	GTNNAC	5 cut(s)	61, 272, 337, 397, 851
Hpy188I	TCNGA	5 cut(s)	18, 160, 177, 556, 801
Hpy188III	TCNNGA	3 cut(s)	23, 45, 467
Hpy8I	GTNNAC	5 cut(s)	61, 272, 337, 397, 851
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	5 cut(s)	134, 242, 574, 682, 860
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	3 cut(s)	111, 274, 393
HpyCH4V	TGCA	3 cut(s)	572, 822, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 440, 815, 910
HpyF3I	CTNAG	5 cut(s)	266, 360, 909, 921, 926
HpySE526I	ACGT	3 cut(s)	111, 274, 393
Hsp92II	CATG	9 cut(s)	67, 103, 349, 356, 428, 434, 685, 822, 919
Kzo9I	GATC	3 cut(s)	147, 262, 463
LmnI	GCTCC	4 cut(s)	19, 104, 385, 745
LweI	GCATC	2 cut(s)	472, 559
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	3 cut(s)	111, 274, 393
MaeIII	GTNAC	4 cut(s)	254, 457, 529, 793
MalI	GATC	3 cut(s)	149, 264, 465
MboI	GATC	3 cut(s)	147, 262, 463
MboII	GAAGA	9 cut(s)	97, 569, 628, 697, 953, 980, 986, 989, 992
MfeI	CAATTG	2 cut(s)	810, 831
MhlI	GDGCHC	3 cut(s)	165, 874, 915
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	7 cut(s)	450, 560, 635, 810, 831, 899, 1026
MluNI	TGGCCA	1 cut(s)	409
MlyI	GAGTC	1 cut(s)	790
MmeI	TCCRAC	1 cut(s)	155
Mox20I	TGGCCA	1 cut(s)	409
Mph1103I	ATGCAT	2 cut(s)	574, 824
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	3 cut(s)	197, 501, 861
MslI	CAYNNNNRTG	3 cut(s)	68, 429, 989
Msp20I	TGGCCA	1 cut(s)	409
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	545
MunI	CAATTG	2 cut(s)	810, 831
MwoI	GCNNNNNNNGC	4 cut(s)	11, 440, 815, 910
NciI	CCSGG	1 cut(s)	545
NdeII	GATC	3 cut(s)	147, 262, 463
NlaIII	CATG	9 cut(s)	67, 103, 349, 356, 428, 434, 685, 822, 919
NmuCI	GTSAC	3 cut(s)	457, 529, 793
NsiI	ATGCAT	2 cut(s)	574, 824
NspI	RCATGY	2 cut(s)	434, 822
PaeI	GCATGC	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	7 cut(s)	7, 19, 41, 76, 178, 470, 619
PleI	GAGTC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	790
Ppu21I	YACGTR	2 cut(s)	112, 394
Psp124BI	GAGCTC	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	529
PspPI	GGNCC	2 cut(s)	229, 512
PstNI	CAGNNNCTG	1 cut(s)	698
RsaI	GTAC	4 cut(s)	38, 214, 706, 756
RsaNI	GTAC	4 cut(s)	37, 213, 705, 755
RseI	CAYNNNNRTG	3 cut(s)	68, 429, 989
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	197, 501, 861
Sau3AI	GATC	3 cut(s)	147, 262, 463
Sau96I	GGNCC	2 cut(s)	229, 512
SchI	GAGTC	1 cut(s)	790
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	3 cut(s)	165, 874, 915
SfaNI	GCATC	2 cut(s)	472, 559
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	2 cut(s)	229, 512
SmiMI	CAYNNNNRTG	3 cut(s)	68, 429, 989
SnaBI	TACGTA	2 cut(s)	112, 394
SphI	GCATGC	1 cut(s)	822
Sse9I	AATT	7 cut(s)	450, 560, 635, 810, 831, 899, 1026
SsiI	CCGC	3 cut(s)	68, 878, 1020
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	3 cut(s)	114, 277, 396
TaqI	TCGA	7 cut(s)	44, 138, 240, 375, 480, 1002, 1008
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	7 cut(s)	450, 560, 635, 810, 831, 899, 1026
TatI	WGTACW	1 cut(s)	754
TfiI	GAWTC	7 cut(s)	7, 19, 41, 76, 178, 470, 619
Tru1I	TTAA	3 cut(s)	197, 501, 861
Tru9I	TTAA	3 cut(s)	197, 501, 861
TscAI	CASTG	2 cut(s)	466, 991
TseFI	GTSAC	3 cut(s)	457, 529, 793
Tsp45I	GTSAC	3 cut(s)	457, 529, 793
TspDTI	ATGAA	4 cut(s)	629, 698, 954, 987
TspRI	CASTG	2 cut(s)	466, 991
VpaK11BI	GGWCC	2 cut(s)	229, 512
XbaI	TCTAGA	1 cut(s)	22
XceI	RCATGY	2 cut(s)	434, 822
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	23
Zsp2I	ATGCAT	2 cut(s)	574, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.