Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7996168.1

Orthogroup ID

OG0005275

Physical Location & Seq

Genomic Coordinates Forward (+)

75 .. 497

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7996168.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggcttcccatactcccaatctggagtgccggatgtacgaggcgcggtacccggaggtggacatggcggtgatgattcaggtgaagaacatcgccgacatgggcgcgtacgtctcactcctcgagtacaacaacatcgagggcatgattctgttctcggagctctcccgccgtcggattcggagcgtgagcagcctcatcaaggtcggccgcatcgagcccgtcatggttctcagggtcgacaaggagaagggctacatcgatttgagtaagaggagagtttccgaggaggatatctccgcctgtgaggagaggtacaacaagagcaagctcgtccactccatcatgcgacatgtcgctgagactctcggtatcgatttggaggtacctttttgcttctctattttgaactccttctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005850 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010564 GO:0010948 GO:0019538 GO:0022402 GO:0031570 GO:0031571 GO:0032991 GO:0033290 GO:0033554 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043614 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0044877 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070993 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

ko03013 ko04138 ko04140 ko04141 ko04210 ko04932 ko05160 ko05162 ko05164 ko05168 map03013 map04138 map04140 map04141 map04210 map04932 map05160 map05162 map05164 map05168

Pfam Domains

Protein Families

EIF_2_alpha S1

Protein Analysis

140

Amino Acids

16.14

Weight (kDa)

6.31

Isoelectric Point (pI)

64.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05470
fragaria_vesca	FvH4_6g15100 FvH4_7g25050
malus_domestica	MD01G1157300.v1.1 MD07G1226100.v1.1
prunus_persica	Prupe.2G255200_v2.0.a1
pyrus_communis	pycom01g17410 pycom07g20450
rosa_chinensis	RchiOBHm_Chr1g0370911 RchiOBHm_Chr3g0468371
rosa_laevigata	RLG00000024436 RLG00000026999
rosa_multiflora	Rmu_co7996168.1_g000001 Rmu_sc0001018.1_g000002 Rmu_sc0004353.1_g000010 Rmu_sc0014003.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286130 Rroxscaffold_6G00412840
rosa_rugosa	Rorug01G0360200 Rorug03G0095000
rosa_samantha	Rh1AG370200 Rh1BG333800 Rh1CG347100 Rh1DG365000 Rh3AG142800 Rh3BG165200 Rh3DG164800
rosa_wichuraiana	Rw1G032580 Rw3G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	48, 385
AccB1I	GGYRCC	2 cut(s)	48, 385
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	2 cut(s)	46, 107
AciI	CCGC	5 cut(s)	46, 68, 169, 211, 300
AcoI	YGGCCR	1 cut(s)	208
AfaI	GTAC	6 cut(s)	38, 50, 110, 128, 317, 387
AfiI	CCNNNNNNNGG	3 cut(s)	58, 174, 202
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	2 cut(s)	163, 331
AluI	AGCT	2 cut(s)	163, 331
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	118, 356
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	413
Asp718I	GGTACC	2 cut(s)	48, 385
AspLEI	GCGC	2 cut(s)	46, 107
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	82, 94
AvaI	CYCGRG	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	48, 385
BanII	GRGCYC	2 cut(s)	165, 222
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	118, 356
BisI	GCNGC	2 cut(s)	193, 211
BlsI	GCNGC	2 cut(s)	194, 212
Bme1390I	CCNGG	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	50, 387
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	2 cut(s)	261, 375
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 174, 202
BseCI	ATCGAT	2 cut(s)	261, 375
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	58, 174, 202
BseMII	CTCAG	2 cut(s)	247, 351
BseRI	GAGGAG	4 cut(s)	110, 289, 302, 323
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	204
Bsh1236I	CGCG	2 cut(s)	46, 107
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	2 cut(s)	48, 385
BshVI	ATCGAT	2 cut(s)	261, 375
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	31, 53
BsiWI	CGTACG	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	58, 174, 202
BsmAI	GTCTC	2 cut(s)	118, 356
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	165, 222
BspACI	CCGC	5 cut(s)	46, 68, 169, 211, 300
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	246, 352
BspDI	ATCGAT	2 cut(s)	261, 375
BspFNI	CGCG	2 cut(s)	46, 107
BspLI	GGNNCC	2 cut(s)	50, 387
BspT107I	GGYRCC	2 cut(s)	48, 385
BssECI	CCNNGG	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	233, 360
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	46, 107
BstHHI	GCGC	2 cut(s)	46, 107
BstMAI	GTCTC	2 cut(s)	118, 356
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	2 cut(s)	46, 107
BstV1I	GCAGC	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	208
Bsu15I	ATCGAT	2 cut(s)	261, 375
BsuRI	GGCC	1 cut(s)	210
BsuTUI	ATCGAT	2 cut(s)	261, 375
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	329
CfoI	GCGC	2 cut(s)	46, 107
ClaI	ATCGAT	2 cut(s)	261, 375
Csp6I	GTAC	6 cut(s)	37, 49, 109, 127, 316, 386
CviAII	CATG	6 cut(s)	64, 100, 145, 226, 346, 353
CviJI	RGCY	7 cut(s)	5, 163, 195, 210, 220, 255, 331
CviKI_1	RGCY	7 cut(s)	5, 163, 195, 210, 220, 255, 331
CviQI	GTAC	6 cut(s)	37, 49, 109, 127, 316, 386
DdeI	CTNAG	2 cut(s)	233, 360
EaeI	YGGCCR	1 cut(s)	208
EagI	CGGCCG	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	163
EclXI	CGGCCG	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	165, 222
Eco32I	GATATC	1 cut(s)	295
Eco52I	CGGCCG	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	295
EcoT38I	GRGCYC	2 cut(s)	165, 222
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	6 cut(s)	67, 103, 148, 229, 349, 356
FaiI	YATR	7 cut(s)	12, 65, 101, 146, 227, 347, 354
FatI	CATG	6 cut(s)	63, 99, 144, 225, 345, 352
FauI	CCCGC	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	193, 211
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	2 cut(s)	165, 222
Fsp4HI	GCNGC	2 cut(s)	193, 211
GlaI	GCGC	2 cut(s)	45, 106
GluI	GCNGC	2 cut(s)	193, 211
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	31, 53
HhaI	GCGC	2 cut(s)	46, 107
Hin1II	CATG	6 cut(s)	67, 103, 148, 229, 349, 356
Hin6I	GCGC	2 cut(s)	44, 105
HinP1I	GCGC	2 cut(s)	44, 105
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	4 cut(s)	76, 148, 178, 364
HpaII	CCGG	2 cut(s)	31, 53
HphI	GGTGA	2 cut(s)	82, 94
Hpy166II	GTNNAC	3 cut(s)	61, 241, 337
Hpy188I	TCNGA	4 cut(s)	160, 177, 183, 286
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	3 cut(s)	61, 241, 337
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	2 cut(s)	233, 360
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	6 cut(s)	67, 103, 148, 229, 349, 356
HspAI	GCGC	2 cut(s)	44, 105
KpnI	GGTACC	2 cut(s)	52, 389
LmnI	GCTCC	2 cut(s)	160, 183
LpnPI	CCDG	6 cut(s)	8, 44, 65, 66, 220, 316
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	111
MboII	GAAGA	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	165, 222
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	2 cut(s)	31, 53
MspR9I	CCNGG	1 cut(s)	53
MvnI	CGCG	2 cut(s)	46, 107
MwoI	GCNNNNNNNGC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	53
NlaIII	CATG	6 cut(s)	67, 103, 148, 229, 349, 356
NlaIV	GGNNCC	2 cut(s)	50, 387
NspI	RCATGY	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	122
PciI	ACATGT	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	3 cut(s)	76, 148, 178
Pfl23II	CGTACG	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	194, 212
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PscI	ACATGT	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	165
PspLI	CGTACG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	50, 387
PspXI	VCTCGAGB	1 cut(s)	122
RsaI	GTAC	6 cut(s)	38, 50, 110, 128, 317, 387
RsaNI	GTAC	6 cut(s)	37, 49, 109, 127, 316, 386
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	239
SatI	GCNGC	2 cut(s)	193, 211
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	165, 222
SetI	ASST	9 cut(s)	60, 84, 114, 165, 207, 317, 333, 387, 391
SfaNI	GCATC	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SsiI	CCGC	5 cut(s)	46, 68, 169, 211, 300
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	6 cut(s)	123, 138, 216, 240, 261, 375
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	76, 148, 178
TseI	GCWGC	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	200
XceI	RCATGY	1 cut(s)	356
XhoI	CTCGAG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.