FvH4_7g25050

Eukaryotic translation initiation factor 2

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
19194748 .. 19197420
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25050.t1

Sequence Viewer

Length: 1026 bp
ATGGCTTCCCACACTCCCAATCTGGAGTGCCGTATGTACGAAGCCCGCTACCCGGAGGTGGACATGGCCGTCATGATCCAGGTCAAGAACATCGCCGACATGGGCGCGTACGTCTCACTCCTCGAGTACAACAACATCGAGGGCATGATTCTCTTCTCGGAGCTCTCCCGCCGTCGGATTCGGAGCGTCAGCAGCCTCATCAAGGTCGGCCGCATCGAGCCGGTCATGGTTCTCAGGGTCGACAAGGAGAAGGGCTACATCGATTTGAGCAAGCGTAGGGTTTCTGAGGAGGATATTGCTGCCTGTGAGGAGAGGTACAACAAGAGCAAGCTCGTCCACTCCATCATGCGACATGTCGCTGAGACTCTCGGCATCGATTTGGAGGAGTTGTACGTCAATATTGGCTGGCCTTTGTACCGGAAGTATGGTCATGCTTTTGAGGCTTTCAAAGTAATCGTCACTGATCCTGATACAGTTCTGAATGCCCTTACATGCGAGGTGAAAGTGACTGGCCCTGATGGACAGGAGGTTACTAAGGTTGTCCCTGCTGTGTCAGAGGATGTGAAAGACTCTCTGGTAAAGAACATCAAGAGAAGAATGACACCACAACCATTGAAGATCCGTGCTGATATTGAAATGAAGTGTTTCCAGTTTGATGGTGTTCTTCACATTAAGGATGCCATGCGGAAGGCAGAAGCTGCAGGCAACAATGACTGTCCTGTGAAGATTAAGCTGGTTGCTCCTCCTCTGTATGTTCTTACCACACAGACTCTTGATAAGGAACAAGGTATCACAGTTCTAGGCAATGCAGTTGTAGCCTGCACAAAAGCAATAGAGCATCACAAGGGGAAACTGTTGGTGAAGGAAACACCTAGAGTGGTGAGTGAAAAGGAAGATAAATTGCTGCAAGAGCACATGAGTAAGCTCCGCCAAGAGAATGAGGAGATTGACGGTGACAGCAGTGAAGAGGAAGAAGACACTGGAATGGGAGAAGTTGAGGTGGAGAACGCAGGCCAGGCATTGTAG

Protein Analysis

342

Amino Acids

38.41

Weight (kDa)

5.47

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 18 - 92 5e-13 S1 RNA binding domain
EIF_2_alpha PF07541 130 - 260 1.7e-34 Eukaryotic translation initiation factor 2 alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 107
AciI CCGC 5 cut(s) 46, 169, 211, 685, 928
AclWI GGATC 3 cut(s) 70, 458, 613
AcoI YGGCCR 2 cut(s) 66, 208
AfaI GTAC 6 cut(s) 38, 110, 128, 317, 392, 416
AfiI CCNNNNNNNGG 4 cut(s) 52, 58, 174, 202
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 3 cut(s) 448, 616, 635
AjnI CCWGG 2 cut(s) 78, 1014
AluBI AGCT 5 cut(s) 163, 331, 698, 733, 925
AluI AGCT 5 cut(s) 163, 331, 698, 733, 925
Alw21I GWGCWC 2 cut(s) 165, 915
Alw26I GTCTC 2 cut(s) 118, 356
AlwI GGATC 3 cut(s) 70, 458, 613
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 5 cut(s) 66, 208, 407, 511, 1012
ApeKI GCWGC 4 cut(s) 192, 299, 698, 904
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 4 cut(s) 511, 871, 892, 965
AvaI CYCGRG 1 cut(s) 122
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 981
Bbv12I GWGCWC 2 cut(s) 165, 915
BbvI GCAGC 4 cut(s) 204, 286, 685, 891
BccI CCATC 3 cut(s) 350, 512, 650
BceAI ACGGC 3 cut(s) 15, 53, 156
BciT130I CCWGG 2 cut(s) 80, 1016
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 118, 356
BfaI CTAG 2 cut(s) 800, 873
BfmI CTRYAG 1 cut(s) 699
BisI GCNGC 5 cut(s) 193, 211, 300, 699, 905
BlsI GCNGC 5 cut(s) 194, 212, 301, 700, 906
Bme1390I CCNGG 3 cut(s) 53, 80, 1016
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 512
BmrFI CCNGG 3 cut(s) 53, 80, 1016
BmsI GCATC 4 cut(s) 222, 381, 667, 847
BpiI GAAGAC 1 cut(s) 981
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 53
Bsa29I ATCGAT 2 cut(s) 261, 375
BsaWI WCCGGW 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 58, 174, 202
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 3 cut(s) 514, 649, 985
Bse3DI GCAATG 1 cut(s) 811
BseBI CCWGG 2 cut(s) 80, 1016
BseCI ATCGAT 2 cut(s) 261, 375
BseGI GGATG 2 cut(s) 565, 682
BseLI CCNNNNNNNGG 4 cut(s) 52, 58, 174, 202
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 3 cut(s) 247, 276, 351
BseNI ACTGG 3 cut(s) 514, 649, 985
BseRI GAGGAG 7 cut(s) 110, 302, 323, 398, 732, 735, 956
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 4 cut(s) 204, 286, 685, 891
BsgI GTGCAG 1 cut(s) 805
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 5 cut(s) 68, 210, 409, 513, 1014
BshVI ATCGAT 2 cut(s) 261, 375
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 165, 915
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 53, 221, 418
BsiWI CGTACG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 4 cut(s) 52, 58, 174, 202
BsmAI GTCTC 2 cut(s) 118, 356
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 5 cut(s) 68, 210, 409, 513, 1014
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 165, 915
Bsp143I GATC 3 cut(s) 75, 463, 618
BspACI CCGC 5 cut(s) 46, 169, 211, 685, 928
BspANI GGCC 5 cut(s) 68, 210, 409, 513, 1014
BspCNI CTCAG 3 cut(s) 246, 277, 352
BspDI ATCGAT 2 cut(s) 261, 375
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 703
BspPI GGATC 3 cut(s) 70, 458, 613
BsrDI GCAATG 1 cut(s) 811
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 3 cut(s) 514, 649, 985
BssAI RCCGGY 1 cut(s) 220
BssMI GATC 3 cut(s) 75, 463, 618
Bst2UI CCWGG 2 cut(s) 80, 1016
Bst4CI ACNGT 5 cut(s) 475, 716, 796, 855, 953
Bst6I CTCTTC 2 cut(s) 158, 960
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 7 cut(s) 46, 272, 329, 407, 703, 820, 1012
BstDEI CTNAG 4 cut(s) 233, 285, 360, 534
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 565, 682
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 3 cut(s) 78, 466, 621
BstMAI GTCTC 2 cut(s) 118, 356
BstMBI GATC 3 cut(s) 75, 463, 618
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 6 cut(s) 192, 440, 698, 815, 910, 1016
BstNI CCWGG 2 cut(s) 80, 1016
BstNSI RCATGY 2 cut(s) 356, 495
BstSCI CCNGG 3 cut(s) 51, 78, 1014
BstSFI CTRYAG 1 cut(s) 699
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 204, 286, 685, 891
BstV2I GAAGAC 1 cut(s) 981
BstX2I RGATCY 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 1 cut(s) 618
BstZI CGGCCG 1 cut(s) 208
Bsu15I ATCGAT 2 cut(s) 261, 375
BsuRI GGCC 5 cut(s) 68, 210, 409, 513, 1014
BsuTUI ATCGAT 2 cut(s) 261, 375
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 565, 682
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 3 cut(s) 459, 967, 978
Cac8I GCNNGC 7 cut(s) 46, 272, 329, 407, 703, 820, 1012
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 72
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 512
ClaI ATCGAT 2 cut(s) 261, 375
CseI GACGC 1 cut(s) 175
Csp6I GTAC 6 cut(s) 37, 109, 127, 316, 391, 415
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviQI GTAC 6 cut(s) 37, 109, 127, 316, 391, 415
DdeI CTNAG 4 cut(s) 233, 285, 360, 534
DpnI GATC 3 cut(s) 77, 465, 620
DpnII GATC 3 cut(s) 75, 463, 618
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 2 cut(s) 66, 208
EagI CGGCCG 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 158, 960
EarI CTCTTC 2 cut(s) 158, 960
EciI GGCGGA 1 cut(s) 917
Ecl136II GAGCTC 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 165
Eco52I CGGCCG 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 78, 1014
EcoT38I GRGCYC 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 118
FaqI GGGAC 1 cut(s) 527
FauI CCCGC 2 cut(s) 53, 176
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 193, 211, 300, 699, 905
FokI GGATG 2 cut(s) 572, 689
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 5 cut(s) 193, 211, 300, 699, 905
FspBI CTAG 2 cut(s) 800, 873
GlaI GCGC 1 cut(s) 106
GluI GCNGC 5 cut(s) 193, 211, 300, 699, 905
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 5 cut(s) 68, 210, 409, 513, 1014
HapII CCGG 3 cut(s) 53, 221, 418
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 107
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 5 cut(s) 148, 178, 364, 569, 769
HpaII CCGG 3 cut(s) 53, 221, 418
HphI GGTGA 4 cut(s) 511, 871, 892, 965
Hpy166II GTNNAC 3 cut(s) 61, 241, 337
Hpy188I TCNGA 6 cut(s) 160, 177, 183, 286, 480, 556
Hpy188III TCNNGA 6 cut(s) 23, 73, 85, 467, 589, 773
Hpy8I GTNNAC 3 cut(s) 61, 241, 337
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 3 cut(s) 244, 682, 856
HpyCH4III ACNGT 5 cut(s) 475, 716, 796, 855, 953
HpyCH4IV ACGT 2 cut(s) 111, 393
HpyCH4V TGCA 4 cut(s) 701, 809, 822, 907
HpyF10VI GCNNNNNNNGC 6 cut(s) 192, 440, 698, 815, 910, 1016
HpyF3I CTNAG 4 cut(s) 233, 285, 360, 534
HpySE526I ACGT 2 cut(s) 111, 393
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 3 cut(s) 75, 463, 618
LmnI GCTCC 4 cut(s) 160, 183, 745, 930
Lsp1109I GCAGC 4 cut(s) 204, 286, 685, 891
LweI GCATC 4 cut(s) 222, 381, 667, 847
MaeI CTAG 2 cut(s) 800, 873
MaeII ACGT 2 cut(s) 111, 393
MaeIII GTNAC 4 cut(s) 457, 505, 529, 953
MalI GATC 3 cut(s) 77, 465, 620
MboI GATC 3 cut(s) 75, 463, 618
MboII GAAGA 9 cut(s) 145, 606, 628, 656, 736, 905, 977, 983, 986
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 2 cut(s) 165, 915
MluCI AATT 1 cut(s) 899
MlyI GAGTC 3 cut(s) 358, 563, 763
MmeI TCCRAC 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 2 cut(s) 672, 729
MslI CAYNNNNRTG 1 cut(s) 983
MspI CCGG 3 cut(s) 53, 221, 418
MspR9I CCNGG 3 cut(s) 53, 80, 1016
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 2 cut(s) 80, 1016
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 6 cut(s) 192, 440, 698, 815, 910, 1016
NciI CCSGG 1 cut(s) 53
NdeII GATC 3 cut(s) 75, 463, 618
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 3 cut(s) 457, 505, 953
NspI RCATGY 2 cut(s) 356, 495
PaeR7I CTCGAG 1 cut(s) 122
PagI TCATGA 1 cut(s) 72
PciI ACATGT 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 148, 178
Pfl23II CGTACG 1 cut(s) 108
PkrI GCNGC 5 cut(s) 194, 212, 301, 700, 906
PleI GAGTC 3 cut(s) 358, 563, 763
PpsI GAGTC 3 cut(s) 358, 563, 763
PscI ACATGT 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 78, 1014
PspGI CCWGG 2 cut(s) 78, 1014
PspLI CGTACG 1 cut(s) 108
PspPI GGNCC 1 cut(s) 512
PspXI VCTCGAGB 1 cut(s) 122
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 618
RsaI GTAC 6 cut(s) 38, 110, 128, 317, 392, 416
RsaNI GTAC 6 cut(s) 37, 109, 127, 316, 391, 415
RseI CAYNNNNRTG 1 cut(s) 983
SacI GAGCTC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 672, 729
SatI GCNGC 5 cut(s) 193, 211, 300, 699, 905
Sau3AI GATC 3 cut(s) 75, 463, 618
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 3 cut(s) 358, 563, 763
ScrFI CCNGG 3 cut(s) 53, 80, 1016
SduI GDGCHC 2 cut(s) 165, 915
SfaNI GCATC 4 cut(s) 222, 381, 667, 847
SfcI CTRYAG 1 cut(s) 699
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 983
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 899
SsiI CCGC 5 cut(s) 46, 169, 211, 685, 928
SspI AATATT 1 cut(s) 400
SspMI CTAG 2 cut(s) 800, 873
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 51, 78, 1014
TaaI ACNGT 5 cut(s) 475, 716, 796, 855, 953
TaiI ACGT 2 cut(s) 114, 396
TaqI TCGA 6 cut(s) 123, 138, 216, 240, 261, 375
TasI AATT 1 cut(s) 899
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 2 cut(s) 148, 178
Tru1I TTAA 2 cut(s) 672, 729
Tru9I TTAA 2 cut(s) 672, 729
TscAI CASTG 3 cut(s) 466, 967, 985
TseFI GTSAC 3 cut(s) 457, 505, 953
TseI GCWGC 4 cut(s) 192, 299, 698, 904
Tsp45I GTSAC 3 cut(s) 457, 505, 953
TspDTI ATGAA 1 cut(s) 653
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 3 cut(s) 466, 967, 985
XagI CCTNNNNNAGG 1 cut(s) 200
XceI RCATGY 2 cut(s) 356, 495
XhoI CTCGAG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 2 cut(s) 800, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.