Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005275

Physical Location & Seq

Genomic Coordinates Forward (+)

35326639 .. 35327614

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTTCCAATACGCCGAATTTGGAGTGCCGCATGTACGAAGCAAAATACCCGGAGGTAGACGCGGCGGTGATGATCCAGGGGTGCCTACGTCTCCCTCCTCGAGTACAACAACATGGAGGGCATGATTCCCTTGACGGAGCTAAGCAATCGTCGCCTCCGGAGCATCAACAAACACGTCAAGGTGGGCCGCATCGAGCCCGTCCTGGTTTTCAAAGTCGACGAACACAAGGGCTACATAGACTTGAGCAAGCGGAGGCTTTCCACGAAGACATCCAGGCCTGCGACGAAAAGTACAACAAGAGCAAGCTCGTCCACTCCATCATGCGCCACGTAGCCGAGACTTTGAACATTGATTTGGAGGAGTTGTACGTCAACATTGCATGGCCGCTGTACCGGAAGTACGGCCATGCAGCTGAAGCTTTCAAAATAATCGCCACGGATTCCGATTCGGTTCTCGATTCCCTGACTCCCGCCGTATCGGAGGAAGTGAAGGAATGTCTGCTGAAGAACATCAAGAGAAGAATGCCGGTGCAACCATTGAAGATCCGAGCCGATATTGAAGTCACGTGTTATCACTTCGACGGCGTTCTTCATATCAAGGATGCGCTTCGAAAGGCGGAAGCTGCGGGGAACGATGAGTGTCCTGTGAAAGTTAAGCTGATTGCTCCTCCACGTTATGTTGTTACTACGCAGACTCTCGATAAGAAGCAAGGGATATCGGAAGCAATGGAGCATCACAAGGGGAAACTAGTAGTTAAGGAGGCACCGAGAGTGGTGAGTGAGGTGGAGGATAAGATGCACACAGATCAGCAGAAGAATGCGGAGGTTATGAGTAGTGGTGATGAGGGTGAGGAAGAAGAAGAAGACACAGGATTGGGAGACGTCGACGTGGAGAACGCAGCCCAGGGAATTATTGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005850 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010564 GO:0010948 GO:0019538 GO:0022402 GO:0031570 GO:0031571 GO:0032991 GO:0033290 GO:0033554 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043614 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0044877 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070993 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

ko03013 ko04138 ko04140 ko04141 ko04210 ko04932 ko05160 ko05162 ko05164 ko05168 map03013 map04138 map04140 map04141 map04210 map04932 map05160 map05162 map05164 map05168

Pfam Domains

Protein Families

EIF_2_alpha S1

Protein Analysis

308

Amino Acids

34.47

Weight (kDa)

5.56

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIF_2_alpha	PF07541	123 - 236	3.5e-35	Eukaryotic translation initiation factor 2 alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05470
fragaria_vesca	FvH4_6g15100 FvH4_7g25050
malus_domestica	MD01G1157300.v1.1 MD07G1226100.v1.1
prunus_persica	Prupe.2G255200_v2.0.a1
pyrus_communis	pycom01g17410 pycom07g20450
rosa_chinensis	RchiOBHm_Chr1g0370911 RchiOBHm_Chr3g0468371
rosa_laevigata	RLG00000024436 RLG00000026999
rosa_multiflora	Rmu_co7996168.1_g000001 Rmu_sc0001018.1_g000002 Rmu_sc0004353.1_g000010 Rmu_sc0014003.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286130 Rroxscaffold_6G00412840
rosa_rugosa	Rorug01G0360200 Rorug03G0095000
rosa_samantha	Rh1AG370200 Rh1BG333800 Rh1CG347100 Rh1DG365000 Rh3AG142800 Rh3BG165200 Rh3DG164800
rosa_wichuraiana	Rw1G032580 Rw3G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	888
AccB1I	GGYRCC	2 cut(s)	84, 766
AccI	GTMKAC	3 cut(s)	60, 220, 888
AccII	CGCG	1 cut(s)	65
AccIII	TCCGGA	1 cut(s)	160
AclWI	GGATC	2 cut(s)	70, 541
AcoI	YGGCCR	2 cut(s)	386, 406
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	2 cut(s)	438, 527
AcvI	CACGTG	1 cut(s)	570
AcyI	GRCGYC	1 cut(s)	885
AfaI	GTAC	6 cut(s)	38, 108, 296, 371, 395, 404
AflIII	ACRYGT	2 cut(s)	176, 569
AgsI	TTSAA	5 cut(s)	215, 349, 427, 544, 563
AhlI	ACTAGT	1 cut(s)	751
AjiI	CACGTC	2 cut(s)	179, 892
AjnI	CCWGG	4 cut(s)	78, 205, 276, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	6 cut(s)	143, 310, 416, 422, 626, 661
AluI	AGCT	6 cut(s)	143, 310, 416, 422, 626, 661
Alw26I	GTCTC	3 cut(s)	98, 335, 876
AlwI	GGATC	2 cut(s)	70, 541
Ama87I	CYCGRG	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	4 cut(s)	188, 279, 386, 406
ApeKI	GCWGC	3 cut(s)	413, 626, 902
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	330, 610
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	82, 790, 854, 863
AsuII	TTCGAA	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	102
BanI	GGYRCC	2 cut(s)	84, 766
BanII	GRGCYC	1 cut(s)	202
BbrPI	CACGTG	1 cut(s)	570
BbsI	GAAGAC	2 cut(s)	276, 873
BbvI	GCAGC	3 cut(s)	425, 613, 914
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	3 cut(s)	421, 461, 601
BciT130I	CCWGG	4 cut(s)	80, 207, 278, 908
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	3 cut(s)	98, 335, 876
BcuI	ACTAGT	1 cut(s)	751
BfaI	CTAG	1 cut(s)	752
BisI	GCNGC	7 cut(s)	31, 66, 191, 389, 414, 627, 903
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	7 cut(s)	32, 67, 192, 390, 415, 628, 904
Bme1390I	CCNGG	5 cut(s)	53, 80, 207, 278, 908
BmeT110I	CYCGRG	1 cut(s)	102
BmgBI	CACGTC	2 cut(s)	179, 892
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	86, 768
BmrFI	CCNGG	5 cut(s)	53, 80, 207, 278, 908
BmsI	GCATC	5 cut(s)	175, 202, 595, 745, 789
BpiI	GAAGAC	2 cut(s)	276, 873
Bpu1102I	GCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	613
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	2 cut(s)	334, 570
BsaHI	GRCGYC	1 cut(s)	885
BsaJI	CCNNGG	4 cut(s)	79, 438, 906, 907
BsaWI	WCCGGW	2 cut(s)	160, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bse118I	RCCGGY	1 cut(s)	529
Bse3DI	GCAATG	2 cut(s)	378, 735
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	4 cut(s)	80, 207, 278, 908
BseDI	CCNNGG	4 cut(s)	79, 438, 906, 907
BseGI	GGATG	2 cut(s)	273, 610
BseMI	GCAATG	2 cut(s)	378, 735
BseRI	GAGGAG	3 cut(s)	90, 377, 660
BseXI	GCAGC	3 cut(s)	425, 613, 914
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	4 cut(s)	190, 281, 388, 408
BshNI	GGYRCC	2 cut(s)	84, 766
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	4 cut(s)	53, 161, 397, 530
BsmAI	GTCTC	3 cut(s)	98, 335, 876
BsmBI	CGTCTC	2 cut(s)	98, 876
BsmI	GAATGC	2 cut(s)	531, 826
BsnI	GGCC	4 cut(s)	190, 281, 388, 408
BsoBI	CYCGRG	1 cut(s)	102
Bsp119I	TTCGAA	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	75, 546, 808
Bsp1720I	GCTNAGC	1 cut(s)	144
BspANI	GGCC	4 cut(s)	190, 281, 388, 408
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	86, 768
BspPI	GGATC	2 cut(s)	70, 541
BspT104I	TTCGAA	1 cut(s)	613
BspT107I	GGYRCC	2 cut(s)	84, 766
BsrDI	GCAATG	2 cut(s)	378, 735
BsrFI	RCCGGY	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	4 cut(s)	79, 438, 906, 907
BssMI	GATC	3 cut(s)	75, 546, 808
BssNI	GRCGYC	1 cut(s)	885
Bst2UI	CCWGG	4 cut(s)	80, 207, 278, 908
BstACI	GRCGYC	1 cut(s)	885
BstBAI	YACGTR	2 cut(s)	334, 570
BstBI	TTCGAA	1 cut(s)	613
BstC8I	GCNNGC	3 cut(s)	252, 283, 308
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	273, 610
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	2 cut(s)	330, 610
BstKTI	GATC	3 cut(s)	78, 549, 811
BstMAI	GTCTC	3 cut(s)	98, 335, 876
BstMBI	GATC	3 cut(s)	75, 546, 808
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 163, 419, 626
BstNI	CCWGG	4 cut(s)	80, 207, 278, 908
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	5 cut(s)	51, 78, 205, 276, 906
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	425, 613, 914
BstV2I	GAAGAC	2 cut(s)	276, 873
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	4 cut(s)	190, 281, 388, 408
BtgI	CCRYGG	1 cut(s)	438
BtrI	CACGTC	2 cut(s)	179, 892
BtsCI	GGATG	2 cut(s)	273, 610
Cac8I	GCNNGC	3 cut(s)	252, 283, 308
CfoI	GCGC	2 cut(s)	330, 610
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	6 cut(s)	37, 107, 295, 370, 394, 403
CviAII	CATG	6 cut(s)	34, 116, 125, 325, 384, 410
CviQI	GTAC	6 cut(s)	37, 107, 295, 370, 394, 403
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	3 cut(s)	77, 548, 810
DpnII	GATC	3 cut(s)	75, 546, 808
EaeI	YGGCCR	2 cut(s)	386, 406
EciI	GGCGGA	1 cut(s)	635
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	720
Eco57I	CTGAAG	2 cut(s)	438, 527
Eco72I	CACGTG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	102
EcoRII	CCWGG	4 cut(s)	78, 205, 276, 906
EcoRV	GATATC	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	202
Esp3I	CGTCTC	2 cut(s)	98, 876
FaeI	CATG	6 cut(s)	37, 119, 128, 328, 387, 413
FatI	CATG	6 cut(s)	33, 115, 124, 324, 383, 409
FauI	CCCGC	2 cut(s)	481, 622
FblI	GTMKAC	3 cut(s)	60, 220, 888
Fnu4HI	GCNGC	7 cut(s)	31, 66, 191, 389, 414, 627, 903
FokI	GGATG	2 cut(s)	260, 617
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	7 cut(s)	31, 66, 191, 389, 414, 627, 903
FspBI	CTAG	1 cut(s)	752
GlaI	GCGC	2 cut(s)	329, 609
GluI	GCNGC	7 cut(s)	31, 66, 191, 389, 414, 627, 903
HaeIII	GGCC	4 cut(s)	190, 281, 388, 408
HapII	CCGG	4 cut(s)	53, 161, 397, 530
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	330, 610
Hin1I	GRCGYC	1 cut(s)	885
Hin1II	CATG	6 cut(s)	37, 119, 128, 328, 387, 413
Hin6I	GCGC	2 cut(s)	328, 608
HinP1I	GCGC	2 cut(s)	328, 608
HincII	GTYRAC	3 cut(s)	221, 376, 889
HindII	GTYRAC	3 cut(s)	221, 376, 889
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	6 cut(s)	128, 443, 449, 461, 469, 697
HpaII	CCGG	4 cut(s)	53, 161, 397, 530
HphI	GGTGA	4 cut(s)	82, 790, 854, 863
Hpy166II	GTNNAC	5 cut(s)	61, 221, 316, 376, 889
Hpy188I	TCNGA	4 cut(s)	448, 484, 551, 724
Hpy188III	TCNNGA	4 cut(s)	161, 458, 517, 701
Hpy8I	GTNNAC	5 cut(s)	61, 221, 316, 376, 889
Hpy99I	CGWCG	6 cut(s)	157, 225, 290, 587, 890, 893
HpyAV	CCTTC	1 cut(s)	487
HpyCH4IV	ACGT	8 cut(s)	91, 178, 333, 372, 569, 676, 885, 891
HpyCH4V	TGCA	4 cut(s)	383, 413, 535, 802
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 163, 419, 626
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	8 cut(s)	91, 178, 333, 372, 569, 676, 885, 891
Hsp92I	GRCGYC	1 cut(s)	885
Hsp92II	CATG	6 cut(s)	37, 119, 128, 328, 387, 413
HspAI	GCGC	2 cut(s)	328, 608
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	75, 546, 808
LmnI	GCTCC	4 cut(s)	140, 163, 673, 733
Lsp1109I	GCAGC	3 cut(s)	425, 613, 914
LweI	GCATC	5 cut(s)	175, 202, 595, 745, 789
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	8 cut(s)	91, 178, 333, 372, 569, 676, 885, 891
MaeIII	GTNAC	2 cut(s)	565, 685
MalI	GATC	3 cut(s)	77, 548, 810
MboI	GATC	3 cut(s)	75, 546, 808
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	19, 912
MlyI	GAGTC	2 cut(s)	463, 691
MroI	TCCGGA	1 cut(s)	160
MseI	TTAA	2 cut(s)	657, 759
MspA1I	CMGCKG	2 cut(s)	391, 416
MspI	CCGG	4 cut(s)	53, 161, 397, 530
MspR9I	CCNGG	5 cut(s)	53, 80, 207, 278, 908
Mva1269I	GAATGC	2 cut(s)	531, 826
MvaI	CCWGG	4 cut(s)	80, 207, 278, 908
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	154, 163, 419, 626
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	75, 546, 808
NlaIII	CATG	6 cut(s)	37, 119, 128, 328, 387, 413
NlaIV	GGNNCC	2 cut(s)	86, 768
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	565
NspI	RCATGY	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	613
PaeR7I	CTCGAG	1 cut(s)	102
PasI	CCCWGGG	1 cut(s)	907
PceI	AGGCCT	1 cut(s)	281
PctI	GAATGC	2 cut(s)	531, 826
PfeI	GAWTC	4 cut(s)	128, 443, 449, 461
PkrI	GCNGC	7 cut(s)	32, 67, 192, 390, 415, 628, 904
PleI	GAGTC	2 cut(s)	463, 691
PmaCI	CACGTG	1 cut(s)	570
PmlI	CACGTG	1 cut(s)	570
PpsI	GAGTC	2 cut(s)	463, 691
Ppu21I	YACGTR	2 cut(s)	334, 570
Psp6I	CCWGG	4 cut(s)	78, 205, 276, 906
PspCI	CACGTG	1 cut(s)	570
PspGI	CCWGG	4 cut(s)	78, 205, 276, 906
PspN4I	GGNNCC	2 cut(s)	86, 768
PspPI	GGNCC	1 cut(s)	188
PspXI	VCTCGAGB	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	6 cut(s)	38, 108, 296, 371, 395, 404
RsaNI	GTAC	6 cut(s)	37, 107, 295, 370, 394, 403
SalI	GTCGAC	2 cut(s)	219, 887
SaqAI	TTAA	2 cut(s)	657, 759
SatI	GCNGC	7 cut(s)	31, 66, 191, 389, 414, 627, 903
Sau3AI	GATC	3 cut(s)	75, 546, 808
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	2 cut(s)	463, 691
ScrFI	CCNGG	5 cut(s)	53, 80, 207, 278, 908
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	5 cut(s)	175, 202, 595, 745, 789
Sfr274I	CTCGAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	613
SgrDI	CGTCGACG	1 cut(s)	887
SlaI	CTCGAG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	102, 245
SmoI	CTYRAG	2 cut(s)	102, 245
SpeI	ACTAGT	1 cut(s)	751
Sse9I	AATT	2 cut(s)	19, 912
SseBI	AGGCCT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	752
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	5 cut(s)	51, 78, 205, 276, 906
TaiI	ACGT	8 cut(s)	94, 181, 336, 375, 572, 679, 888, 894
TaqI	TCGA	8 cut(s)	103, 196, 220, 459, 582, 613, 702, 888
TasI	AATT	2 cut(s)	19, 912
TatI	WGTACW	2 cut(s)	106, 294
TauI	GCSGC	4 cut(s)	33, 68, 193, 391
TfiI	GAWTC	4 cut(s)	128, 443, 449, 461
Tru1I	TTAA	2 cut(s)	657, 759
Tru9I	TTAA	2 cut(s)	657, 759
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	413, 626, 902
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	1 cut(s)	584
TspGWI	ACGGA	2 cut(s)	153, 455
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	102
XmiI	GTMKAC	3 cut(s)	60, 220, 888
XspI	CTAG	1 cut(s)	752
ZraI	GACGTC	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.