Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014003.1

Orthogroup ID

OG0005275

Physical Location & Seq

Genomic Coordinates Reverse (-)

2015 .. 2992

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014003.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggcttccaatacgccgaatttggagtgccgcatgtacgaagcaaaatacccggaggtagacgcggcggtgatgatccaggtcaatagcattgacaacaggggtgcctacgtctccctcctcgagtacaacaacatggagggcatgattcccttgacggagctaagcaatcgtcgcctccggagcatcaacaaacacgtcaaggtgggccgcatcgagcccgtcctggtttacaaggtcgacgaacacaagggctacatagacttgagcaagcggaggctttcccacgaagacatccaggcctgcgacgaaaagtacaacaagagcaagctcgtccactccatcatgcgccacgtagccgagactttgaacattgatttggaggaactgtacgtcaacattgcatggccgctgtaccggaagtacggccatgcagctgaagctttcaaaataatcgccacggattccgattcggttctcgattccctgactcccaccgtatcggaggaagtgaaggaatgtctgctgaagaacatcaagagaagaatgccggtgcaaccattgaagatccgagccgatattgaagtcacgtgttatcacttcgacggcgttcttcatatcaaggatgcgcttcgaaaggcggaagctgcggggaacgatgagtgtcctgtgaaagttaagctgattgctcctccgcgttatgttgttactacgcagactctcgataagaagcaagggatatcggttttgagcgaagccatagaaatctgcagggaagcaatggagcatcacaaggggaaactagtagtgaaggaggcaccgagagtggtgagtgaggtggaggataagatgcacacagatcagcagaagaatgcggaggttatgagtagtggtgatgagggtgaggaagaagaagaagacacaggattgggagacgtcgacgtggagaacgcaggccagggcattattgaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005850 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010564 GO:0010948 GO:0019538 GO:0022402 GO:0031570 GO:0031571 GO:0032991 GO:0033290 GO:0033554 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043614 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0044877 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070993 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

ko03013 ko04138 ko04140 ko04141 ko04210 ko04932 ko05160 ko05162 ko05164 ko05168 map03013 map04138 map04140 map04141 map04210 map04932 map05160 map05162 map05164 map05168

Pfam Domains

Protein Families

EIF_2_alpha S1

Protein Analysis

325

Amino Acids

36.74

Weight (kDa)

5.29

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05470
fragaria_vesca	FvH4_6g15100 FvH4_7g25050
malus_domestica	MD01G1157300.v1.1 MD07G1226100.v1.1
prunus_persica	Prupe.2G255200_v2.0.a1
pyrus_communis	pycom01g17410 pycom07g20450
rosa_chinensis	RchiOBHm_Chr1g0370911 RchiOBHm_Chr3g0468371
rosa_laevigata	RLG00000024436 RLG00000026999
rosa_multiflora	Rmu_co7996168.1_g000001 Rmu_sc0001018.1_g000002 Rmu_sc0004353.1_g000010 Rmu_sc0014003.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286130 Rroxscaffold_6G00412840
rosa_rugosa	Rorug01G0360200 Rorug03G0095000
rosa_samantha	Rh1AG370200 Rh1BG333800 Rh1CG347100 Rh1DG365000 Rh3AG142800 Rh3BG165200 Rh3DG164800
rosa_wichuraiana	Rw1G032580 Rw3G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	939
AccB1I	GGYRCC	2 cut(s)	104, 817
AccI	GTMKAC	3 cut(s)	60, 240, 939
AccII	CGCG	2 cut(s)	65, 697
AccIII	TCCGGA	1 cut(s)	180
AclWI	GGATC	2 cut(s)	70, 562
AcoI	YGGCCR	2 cut(s)	407, 427
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	2 cut(s)	459, 548
AcvI	CACGTG	1 cut(s)	591
AcyI	GRCGYC	1 cut(s)	936
AfaI	GTAC	6 cut(s)	38, 128, 317, 392, 416, 425
AflIII	ACRYGT	2 cut(s)	196, 590
AgsI	TTSAA	5 cut(s)	370, 448, 565, 584, 971
AhlI	ACTAGT	1 cut(s)	802
AjiI	CACGTC	2 cut(s)	199, 943
AjnI	CCWGG	4 cut(s)	78, 225, 297, 957
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	6 cut(s)	163, 331, 437, 443, 647, 682
AluI	AGCT	6 cut(s)	163, 331, 437, 443, 647, 682
Alw26I	GTCTC	3 cut(s)	118, 356, 927
AlwI	GGATC	2 cut(s)	70, 562
Ama87I	CYCGRG	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	5 cut(s)	208, 300, 407, 427, 955
ApeKI	GCWGC	2 cut(s)	434, 647
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	351, 631
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	82, 841, 905, 914
AsuII	TTCGAA	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	104, 817
BanII	GRGCYC	1 cut(s)	222
BbrPI	CACGTG	1 cut(s)	591
BbsI	GAAGAC	2 cut(s)	297, 924
BbvI	GCAGC	2 cut(s)	446, 634
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	2 cut(s)	442, 622
BciT130I	CCWGG	4 cut(s)	80, 227, 299, 959
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	3 cut(s)	118, 356, 927
BcuI	ACTAGT	1 cut(s)	802
BfaI	CTAG	1 cut(s)	803
BfmI	CTRYAG	1 cut(s)	769
BisI	GCNGC	6 cut(s)	31, 66, 211, 410, 435, 648
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	6 cut(s)	32, 67, 212, 411, 436, 649
Bme1390I	CCNGG	5 cut(s)	53, 80, 227, 299, 959
BmeT110I	CYCGRG	1 cut(s)	122
BmgBI	CACGTC	2 cut(s)	199, 943
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	106, 819
BmrFI	CCNGG	5 cut(s)	53, 80, 227, 299, 959
BmsI	GCATC	5 cut(s)	195, 222, 616, 796, 840
BpiI	GAAGAC	2 cut(s)	297, 924
Bpu1102I	GCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	2 cut(s)	355, 591
BsaHI	GRCGYC	1 cut(s)	936
BsaJI	CCNNGG	2 cut(s)	459, 958
BsaWI	WCCGGW	2 cut(s)	180, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse118I	RCCGGY	1 cut(s)	550
Bse3DI	GCAATG	2 cut(s)	399, 786
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	4 cut(s)	80, 227, 299, 959
BseDI	CCNNGG	2 cut(s)	459, 958
BseGI	GGATG	2 cut(s)	294, 631
BseMI	GCAATG	2 cut(s)	399, 786
BseRI	GAGGAG	2 cut(s)	110, 681
BseXI	GCAGC	2 cut(s)	446, 634
Bsh1236I	CGCG	2 cut(s)	65, 697
BshFI	GGCC	5 cut(s)	210, 302, 409, 429, 957
BshNI	GGYRCC	2 cut(s)	104, 817
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	4 cut(s)	53, 181, 418, 551
BsmAI	GTCTC	3 cut(s)	118, 356, 927
BsmBI	CGTCTC	2 cut(s)	118, 927
BsmI	GAATGC	2 cut(s)	552, 877
BsnI	GGCC	5 cut(s)	210, 302, 409, 429, 957
BsoBI	CYCGRG	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	75, 567, 859
Bsp1720I	GCTNAGC	1 cut(s)	164
BspANI	GGCC	5 cut(s)	210, 302, 409, 429, 957
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	2 cut(s)	65, 697
BspLI	GGNNCC	2 cut(s)	106, 819
BspMAI	CTGCAG	1 cut(s)	773
BspPI	GGATC	2 cut(s)	70, 562
BspT104I	TTCGAA	1 cut(s)	634
BspT107I	GGYRCC	2 cut(s)	104, 817
BsrDI	GCAATG	2 cut(s)	399, 786
BsrFI	RCCGGY	1 cut(s)	550
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	2 cut(s)	459, 958
BssMI	GATC	3 cut(s)	75, 567, 859
BssNI	GRCGYC	1 cut(s)	936
Bst2UI	CCWGG	4 cut(s)	80, 227, 299, 959
Bst4CI	ACNGT	2 cut(s)	390, 499
BstACI	GRCGYC	1 cut(s)	936
BstBAI	YACGTR	2 cut(s)	355, 591
BstBI	TTCGAA	1 cut(s)	634
BstC8I	GCNNGC	4 cut(s)	272, 304, 329, 955
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	294, 631
BstFNI	CGCG	2 cut(s)	65, 697
BstHHI	GCGC	2 cut(s)	351, 631
BstKTI	GATC	3 cut(s)	78, 570, 862
BstMAI	GTCTC	3 cut(s)	118, 356, 927
BstMBI	GATC	3 cut(s)	75, 567, 859
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 183, 440, 647
BstNI	CCWGG	4 cut(s)	80, 227, 299, 959
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	5 cut(s)	51, 78, 225, 297, 957
BstSFI	CTRYAG	1 cut(s)	769
BstUI	CGCG	2 cut(s)	65, 697
BstV1I	GCAGC	2 cut(s)	446, 634
BstV2I	GAAGAC	2 cut(s)	297, 924
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
BsuRI	GGCC	5 cut(s)	210, 302, 409, 429, 957
BtgI	CCRYGG	1 cut(s)	459
BtrI	CACGTC	2 cut(s)	199, 943
BtsCI	GGATG	2 cut(s)	294, 631
Cac8I	GCNNGC	4 cut(s)	272, 304, 329, 955
CfoI	GCGC	2 cut(s)	351, 631
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
CviAII	CATG	6 cut(s)	34, 136, 145, 346, 405, 431
CviQI	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	3 cut(s)	77, 569, 861
DpnII	GATC	3 cut(s)	75, 567, 859
EaeI	YGGCCR	2 cut(s)	407, 427
EciI	GGCGGA	1 cut(s)	656
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	741
Eco57I	CTGAAG	2 cut(s)	459, 548
Eco72I	CACGTG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	122
EcoRII	CCWGG	4 cut(s)	78, 225, 297, 957
EcoRV	GATATC	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	222
Esp3I	CGTCTC	2 cut(s)	118, 927
FaeI	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
FatI	CATG	6 cut(s)	33, 135, 144, 345, 404, 430
FauI	CCCGC	1 cut(s)	643
FblI	GTMKAC	3 cut(s)	60, 240, 939
Fnu4HI	GCNGC	6 cut(s)	31, 66, 211, 410, 435, 648
FokI	GGATG	2 cut(s)	281, 638
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	6 cut(s)	31, 66, 211, 410, 435, 648
FspBI	CTAG	1 cut(s)	803
GlaI	GCGC	2 cut(s)	350, 630
GluI	GCNGC	6 cut(s)	31, 66, 211, 410, 435, 648
HaeIII	GGCC	5 cut(s)	210, 302, 409, 429, 957
HapII	CCGG	4 cut(s)	53, 181, 418, 551
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	351, 631
Hin1I	GRCGYC	1 cut(s)	936
Hin1II	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
Hin6I	GCGC	2 cut(s)	349, 629
HinP1I	GCGC	2 cut(s)	349, 629
HincII	GTYRAC	3 cut(s)	241, 397, 940
HindII	GTYRAC	3 cut(s)	241, 397, 940
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	6 cut(s)	148, 464, 470, 482, 490, 718
HpaII	CCGG	4 cut(s)	53, 181, 418, 551
HphI	GGTGA	4 cut(s)	82, 841, 905, 914
Hpy166II	GTNNAC	6 cut(s)	61, 232, 241, 337, 397, 940
Hpy188I	TCNGA	3 cut(s)	469, 505, 572
Hpy188III	TCNNGA	4 cut(s)	181, 479, 538, 722
Hpy8I	GTNNAC	6 cut(s)	61, 232, 241, 337, 397, 940
Hpy99I	CGWCG	6 cut(s)	177, 245, 311, 608, 941, 944
HpyAV	CCTTC	2 cut(s)	508, 805
HpyCH4III	ACNGT	2 cut(s)	390, 499
HpyCH4IV	ACGT	7 cut(s)	111, 198, 354, 393, 590, 936, 942
HpyCH4V	TGCA	5 cut(s)	404, 434, 556, 771, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 183, 440, 647
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	7 cut(s)	111, 198, 354, 393, 590, 936, 942
Hsp92I	GRCGYC	1 cut(s)	936
Hsp92II	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
HspAI	GCGC	2 cut(s)	349, 629
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	75, 567, 859
LmnI	GCTCC	4 cut(s)	160, 183, 694, 784
Lsp1109I	GCAGC	2 cut(s)	446, 634
LweI	GCATC	5 cut(s)	195, 222, 616, 796, 840
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	7 cut(s)	111, 198, 354, 393, 590, 936, 942
MaeIII	GTNAC	2 cut(s)	586, 706
MalI	GATC	3 cut(s)	77, 569, 861
MboI	GATC	3 cut(s)	75, 567, 859
MflI	RGATCY	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	484, 712
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	1 cut(s)	678
MspA1I	CMGCKG	2 cut(s)	412, 437
MspI	CCGG	4 cut(s)	53, 181, 418, 551
MspR9I	CCNGG	5 cut(s)	53, 80, 227, 299, 959
Mva1269I	GAATGC	2 cut(s)	552, 877
MvaI	CCWGG	4 cut(s)	80, 227, 299, 959
MvnI	CGCG	2 cut(s)	65, 697
MwoI	GCNNNNNNNGC	4 cut(s)	174, 183, 440, 647
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	75, 567, 859
NlaIII	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
NlaIV	GGNNCC	2 cut(s)	106, 819
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	302
PctI	GAATGC	2 cut(s)	552, 877
PfeI	GAWTC	4 cut(s)	148, 464, 470, 482
PkrI	GCNGC	6 cut(s)	32, 67, 212, 411, 436, 649
PleI	GAGTC	2 cut(s)	484, 712
PmaCI	CACGTG	1 cut(s)	591
PmlI	CACGTG	1 cut(s)	591
PpsI	GAGTC	2 cut(s)	484, 712
Ppu21I	YACGTR	2 cut(s)	355, 591
Psp6I	CCWGG	4 cut(s)	78, 225, 297, 957
PspCI	CACGTG	1 cut(s)	591
PspGI	CCWGG	4 cut(s)	78, 225, 297, 957
PspN4I	GGNNCC	2 cut(s)	106, 819
PspPI	GGNCC	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	6 cut(s)	38, 128, 317, 392, 416, 425
RsaNI	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
SalI	GTCGAC	2 cut(s)	239, 938
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	6 cut(s)	31, 66, 211, 410, 435, 648
Sau3AI	GATC	3 cut(s)	75, 567, 859
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	484, 712
ScrFI	CCNGG	5 cut(s)	53, 80, 227, 299, 959
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	5 cut(s)	195, 222, 616, 796, 840
SfcI	CTRYAG	1 cut(s)	769
Sfr274I	CTCGAG	1 cut(s)	122
SfuI	TTCGAA	1 cut(s)	634
SgrDI	CGTCGACG	1 cut(s)	938
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	122, 265
SmoI	CTYRAG	2 cut(s)	122, 265
SpeI	ACTAGT	1 cut(s)	802
Sse9I	AATT	1 cut(s)	19
SseBI	AGGCCT	1 cut(s)	302
SspMI	CTAG	1 cut(s)	803
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	5 cut(s)	51, 78, 225, 297, 957
TaaI	ACNGT	2 cut(s)	390, 499
TaiI	ACGT	7 cut(s)	114, 201, 357, 396, 593, 939, 945
TaqI	TCGA	8 cut(s)	123, 216, 240, 480, 603, 634, 723, 939
TasI	AATT	1 cut(s)	19
TatI	WGTACW	2 cut(s)	126, 315
TauI	GCSGC	4 cut(s)	33, 68, 213, 412
TfiI	GAWTC	4 cut(s)	148, 464, 470, 482
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	2 cut(s)	434, 647
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	1 cut(s)	605
TspGWI	ACGGA	2 cut(s)	173, 476
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	122
XmiI	GTMKAC	3 cut(s)	60, 240, 939
XspI	CTAG	1 cut(s)	803
ZraI	GACGTC	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.