Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004353.1

Orthogroup ID

OG0005275

Physical Location & Seq

Genomic Coordinates Forward (+)

38560 .. 39028

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004353.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 469 bp

atggcttccaatacgccgaatttggagtgccgcatgtacgaagcaaaatacccggaggtagacgcggcggtgatgatccaggtcaatagcattgacgacgtgggtgccaaggtctccctcctcgagtacaacaacatggagggcatgattcccttgacggagctaagcaatcgtcgcctccggagcatcaacaaacacgtcaaggtgggccgcatcgagcccgtcctggtttacaaggtcgacgaacacaagggctacatagacttgagcaagcggaggctttcccacgaagacatccaggcctgcgacgaaaagtacaacaagagcaagctcgtccactccatcatgcgccacgtggccgagactttgaacattgatttggaggagttgtacgtcaacattgcatggccgctgtaccggaagtacggccatgcagctgaagctttcaaaataatcgccacggattccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005850 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010564 GO:0010948 GO:0019538 GO:0022402 GO:0031570 GO:0031571 GO:0032991 GO:0033290 GO:0033554 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043614 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0044877 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070993 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

ko03013 ko04138 ko04140 ko04141 ko04210 ko04932 ko05160 ko05162 ko05164 ko05168 map03013 map04138 map04140 map04141 map04210 map04932 map05160 map05162 map05164 map05168

Pfam Domains

Protein Families

EIF_2_alpha S1

Protein Analysis

156

Amino Acids

17.95

Weight (kDa)

6.3

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05470
fragaria_vesca	FvH4_6g15100 FvH4_7g25050
malus_domestica	MD01G1157300.v1.1 MD07G1226100.v1.1
prunus_persica	Prupe.2G255200_v2.0.a1
pyrus_communis	pycom01g17410 pycom07g20450
rosa_chinensis	RchiOBHm_Chr1g0370911 RchiOBHm_Chr3g0468371
rosa_laevigata	RLG00000024436 RLG00000026999
rosa_multiflora	Rmu_co7996168.1_g000001 Rmu_sc0001018.1_g000002 Rmu_sc0004353.1_g000010 Rmu_sc0014003.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286130 Rroxscaffold_6G00412840
rosa_rugosa	Rorug01G0360200 Rorug03G0095000
rosa_samantha	Rh1AG370200 Rh1BG333800 Rh1CG347100 Rh1DG365000 Rh3AG142800 Rh3BG165200 Rh3DG164800
rosa_wichuraiana	Rw1G032580 Rw3G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccI	GTMKAC	2 cut(s)	60, 240
AccII	CGCG	1 cut(s)	65
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	6 cut(s)	31, 65, 68, 211, 274, 410
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	3 cut(s)	357, 407, 427
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	459
AcvI	CACGTG	1 cut(s)	355
AfaI	GTAC	6 cut(s)	38, 128, 317, 392, 416, 425
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	370, 448
AjiI	CACGTC	2 cut(s)	100, 199
AjnI	CCWGG	3 cut(s)	78, 225, 297
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	4 cut(s)	163, 331, 437, 443
AluI	AGCT	4 cut(s)	163, 331, 437, 443
Alw26I	GTCTC	2 cut(s)	118, 356
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	5 cut(s)	208, 300, 357, 407, 427
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	222
BbrPI	CACGTG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	3 cut(s)	80, 227, 299
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	118, 356
BisI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	5 cut(s)	32, 67, 212, 411, 436
Bme1390I	CCNGG	4 cut(s)	53, 80, 227, 299
BmeT110I	CYCGRG	1 cut(s)	122
BmgBI	CACGTC	2 cut(s)	100, 199
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	4 cut(s)	53, 80, 227, 299
BmsI	GCATC	2 cut(s)	195, 222
BpiI	GAAGAC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	108, 459
BsaWI	WCCGGW	2 cut(s)	180, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse3DI	GCAATG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	80, 227, 299
BseDI	CCNNGG	2 cut(s)	108, 459
BseGI	GGATG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	399
BseRI	GAGGAG	2 cut(s)	110, 398
BseXI	GCAGC	1 cut(s)	446
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	5 cut(s)	210, 302, 359, 409, 429
BshNI	GGYRCC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	53, 181, 418
BsmAI	GTCTC	2 cut(s)	118, 356
BsnI	GGCC	5 cut(s)	210, 302, 359, 409, 429
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	75
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	6 cut(s)	31, 65, 68, 211, 274, 410
BspANI	GGCC	5 cut(s)	210, 302, 359, 409, 429
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	108, 459
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	3 cut(s)	80, 227, 299
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	272, 304, 329
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	118, 356
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 183, 440
BstNI	CCWGG	3 cut(s)	80, 227, 299
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	4 cut(s)	51, 78, 225, 297
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	5 cut(s)	210, 302, 359, 409, 429
BtgI	CCRYGG	1 cut(s)	459
BtrI	CACGTC	2 cut(s)	100, 199
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	272, 304, 329
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
CviAII	CATG	6 cut(s)	34, 136, 145, 346, 405, 431
CviQI	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	3 cut(s)	357, 407, 427
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	459
Eco72I	CACGTG	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	122
EcoRII	CCWGG	3 cut(s)	78, 225, 297
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
FaiI	YATR	7 cut(s)	35, 137, 146, 260, 347, 406, 432
FatI	CATG	6 cut(s)	33, 135, 144, 345, 404, 430
FblI	GTMKAC	2 cut(s)	60, 240
Fnu4HI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
HaeIII	GGCC	5 cut(s)	210, 302, 359, 409, 429
HapII	CCGG	3 cut(s)	53, 181, 418
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	2 cut(s)	241, 397
HindII	GTYRAC	2 cut(s)	241, 397
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	2 cut(s)	148, 464
HpaII	CCGG	3 cut(s)	53, 181, 418
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	5 cut(s)	61, 232, 241, 337, 397
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	5 cut(s)	61, 232, 241, 337, 397
Hpy99I	CGWCG	4 cut(s)	101, 177, 245, 311
HpyCH4IV	ACGT	4 cut(s)	99, 198, 354, 393
HpyCH4V	TGCA	2 cut(s)	404, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 183, 440
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	4 cut(s)	99, 198, 354, 393
Hsp92II	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
HspAI	GCGC	1 cut(s)	349
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	160, 183
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	2 cut(s)	195, 222
MaeII	ACGT	4 cut(s)	99, 198, 354, 393
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	7 cut(s)	49, 128, 131, 133, 188, 270, 376
MroI	TCCGGA	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	412, 437
MspI	CCGG	3 cut(s)	53, 181, 418
MspR9I	CCNGG	4 cut(s)	53, 80, 227, 299
MvaI	CCWGG	3 cut(s)	80, 227, 299
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	174, 183, 440
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
NlaIV	GGNNCC	1 cut(s)	106
NmeAIII	GCCGAG	1 cut(s)	385
NspI	RCATGY	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	148, 464
PkrI	GCNGC	5 cut(s)	32, 67, 212, 411, 436
PmaCI	CACGTG	1 cut(s)	355
PmlI	CACGTG	1 cut(s)	355
Ppu21I	YACGTR	1 cut(s)	355
Psp6I	CCWGG	3 cut(s)	78, 225, 297
PspCI	CACGTG	1 cut(s)	355
PspGI	CCWGG	3 cut(s)	78, 225, 297
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	6 cut(s)	38, 128, 317, 392, 416, 425
RsaNI	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
SalI	GTCGAC	1 cut(s)	239
SatI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	4 cut(s)	53, 80, 227, 299
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	195, 222
Sfr274I	CTCGAG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	122, 265
SmoI	CTYRAG	2 cut(s)	122, 265
Sse9I	AATT	1 cut(s)	19
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	6 cut(s)	31, 65, 68, 211, 274, 410
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	4 cut(s)	51, 78, 225, 297
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	4 cut(s)	102, 201, 357, 396
TaqI	TCGA	3 cut(s)	123, 216, 240
TasI	AATT	1 cut(s)	19
TatI	WGTACW	2 cut(s)	126, 315
TauI	GCSGC	4 cut(s)	33, 68, 213, 412
TfiI	GAWTC	2 cut(s)	148, 464
TseI	GCWGC	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	173
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	122
XmiI	GTMKAC	2 cut(s)	60, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.