RchiOBHm_Chr3g0468371

Eukaryotic translation initiation factor 2

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
14426012 .. 14426992
981 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43427

Sequence Viewer

Length: 981 bp
ATGGCTTCCAATACGCCGAATTTGGAGTGCCGCATGTACGAAGCAAAATACCCGGAGATAGACGCGGCGGTGATGATCCAGGTCAACCGCATTGACCACATGGGCGCCTATGTCTCCCTTCTCGAGTATAACAACATGGAGGGCATGATTCCCTTGACGGAGCTAAGTAACCGTCGCCTCCGGAGCATCAACAAACACGTCAAGGTGGGCCGCATCGAGCCCGTCCTGGTTTACAAGGTCGACGAACACAAGGGCTACATAGACTTGAGCAAGCGGAGGCTTTCCCACGAAGACATCCAGGCCTGCGACGAAAAGTACAACAAGAGCAAGCTCGTCCACTCCATCATGCGCCACGTTGCCGAGACTTTGAACATTGATTTGGAGGAGTTGTACGTCAACATTGCATGGCCGCTGTACCGGAAGTACGGCCATGCAGCTGAAGCTTTCAAAATAATCGCCACGGATTCCGATTCGGTTCTCGATTCCCTGACTCCCACCGTATCGGAGGAAGTGAAGGAATGTCTGCTGAAGAACATCAAGAGAAGAATGCCGGTGCAACCATTGAAGATCCGAGCCGATATTGAAGTCACGTGTTATCACTTCGACGGCGTTCTTCATATCAAGGATGCGCTTCGAAAGGCGGAAGCTGCGGGGAACGATGAGTGTCCTGTGAAAGTTAAGCTGATTGCTCCTCCACGTTATGTTGTTACTACGCAGACTCTCGATAAGAAGCAAGGGATATCGGTTTTGAGCGAAGCCATTGAAACCTGCAGGGAAGCAATGGAGCATCACAAGGGGAAACTAGTAGTTAAGGAGGCACCGAGAGTGGTGAGTGAGGTGGAGGATAAGATGCACACAGATCAGCAGAAGAATGCGGAGGTTATGAGTAGTGATGATGAGGGTGAGGAAGAAGAAGAAGAAGACACAGGATTGGGAGACGTCGACGTGGAGAACGCAGGCCAGGGCATTATTGTAGATTGA

Protein Analysis

326

Amino Acids

36.97

Weight (kDa)

5.28

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 18 - 92 7e-13 S1 RNA binding domain
EIF_2_alpha PF07541 130 - 243 3.1e-35 Eukaryotic translation initiation factor 2 alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 942
Acc36I ACCTGC 1 cut(s) 776
AccB1I GGYRCC 2 cut(s) 104, 817
AccI GTMKAC 2 cut(s) 240, 942
AccII CGCG 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 180
AclWI GGATC 2 cut(s) 70, 562
AcoI YGGCCR 2 cut(s) 407, 427
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 2 cut(s) 459, 548
AcvI CACGTG 1 cut(s) 591
AcyI GRCGYC 2 cut(s) 105, 939
AfaI GTAC 5 cut(s) 38, 317, 392, 416, 425
AflIII ACRYGT 2 cut(s) 196, 590
AgsI TTSAA 5 cut(s) 370, 448, 565, 584, 764
AhlI ACTAGT 1 cut(s) 802
AjiI CACGTC 2 cut(s) 199, 946
AjnI CCWGG 4 cut(s) 78, 225, 297, 960
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 6 cut(s) 163, 331, 437, 443, 647, 682
AluI AGCT 6 cut(s) 163, 331, 437, 443, 647, 682
Alw26I GTCTC 3 cut(s) 118, 356, 930
AlwI GGATC 2 cut(s) 70, 562
Ama87I CYCGRG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 180
AoxI GGCC 5 cut(s) 208, 300, 407, 427, 958
ApeKI GCWGC 2 cut(s) 434, 647
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 3 cut(s) 107, 351, 631
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 82, 841, 914
AsuII TTCGAA 1 cut(s) 634
AvaI CYCGRG 1 cut(s) 122
BanI GGYRCC 2 cut(s) 104, 817
BanII GRGCYC 1 cut(s) 222
BbrPI CACGTG 1 cut(s) 591
BbsI GAAGAC 2 cut(s) 297, 927
BbvI GCAGC 2 cut(s) 446, 634
BccI CCATC 1 cut(s) 350
BceAI ACGGC 2 cut(s) 442, 622
BciT130I CCWGG 4 cut(s) 80, 227, 299, 962
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 3 cut(s) 118, 356, 930
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 1 cut(s) 769
BfoI RGCGCY 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 776
BisI GCNGC 6 cut(s) 31, 66, 211, 410, 435, 648
BlsI GCNGC 6 cut(s) 32, 67, 212, 411, 436, 649
Bme1390I CCNGG 5 cut(s) 53, 80, 227, 299, 962
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 2 cut(s) 199, 946
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 106, 819
BmrFI CCNGG 5 cut(s) 53, 80, 227, 299, 962
BmsI GCATC 5 cut(s) 195, 222, 616, 796, 840
BpiI GAAGAC 2 cut(s) 297, 927
Bpu14I TTCGAA 1 cut(s) 634
BpuEI CTTGAG 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 591
BsaHI GRCGYC 2 cut(s) 105, 939
BsaJI CCNNGG 2 cut(s) 459, 961
BsaWI WCCGGW 2 cut(s) 180, 417
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bse118I RCCGGY 1 cut(s) 550
Bse3DI GCAATG 2 cut(s) 399, 786
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 4 cut(s) 80, 227, 299, 962
BseDI CCNNGG 2 cut(s) 459, 961
BseGI GGATG 2 cut(s) 294, 631
BseMI GCAATG 2 cut(s) 399, 786
BseRI GAGGAG 2 cut(s) 398, 681
BseXI GCAGC 2 cut(s) 446, 634
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 5 cut(s) 210, 302, 409, 429, 960
BshNI GGYRCC 2 cut(s) 104, 817
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 4 cut(s) 53, 181, 418, 551
BsmAI GTCTC 3 cut(s) 118, 356, 930
BsmBI CGTCTC 1 cut(s) 930
BsmI GAATGC 2 cut(s) 552, 877
BsnI GGCC 5 cut(s) 210, 302, 409, 429, 960
BsoBI CYCGRG 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 180
Bsp143I GATC 3 cut(s) 75, 567, 859
BspANI GGCC 5 cut(s) 210, 302, 409, 429, 960
BspEI TCCGGA 1 cut(s) 180
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 106, 819
BspMAI CTGCAG 1 cut(s) 773
BspMI ACCTGC 1 cut(s) 776
BspPI GGATC 2 cut(s) 70, 562
BspT104I TTCGAA 1 cut(s) 634
BspT107I GGYRCC 2 cut(s) 104, 817
BsrDI GCAATG 2 cut(s) 399, 786
BsrFI RCCGGY 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 459, 961
BssMI GATC 3 cut(s) 75, 567, 859
BssNI GRCGYC 2 cut(s) 105, 939
Bst2UI CCWGG 4 cut(s) 80, 227, 299, 962
Bst4CI ACNGT 2 cut(s) 173, 499
BstACI GRCGYC 2 cut(s) 105, 939
BstBAI YACGTR 1 cut(s) 591
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 4 cut(s) 272, 304, 329, 958
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 294, 631
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 3 cut(s) 107, 351, 631
BstKTI GATC 3 cut(s) 78, 570, 862
BstMAI GTCTC 3 cut(s) 118, 356, 930
BstMBI GATC 3 cut(s) 75, 567, 859
BstMWI GCNNNNNNNGC 3 cut(s) 183, 440, 647
BstNI CCWGG 4 cut(s) 80, 227, 299, 962
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 5 cut(s) 51, 78, 225, 297, 960
BstSFI CTRYAG 1 cut(s) 769
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 446, 634
BstV2I GAAGAC 2 cut(s) 297, 927
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BsuRI GGCC 5 cut(s) 210, 302, 409, 429, 960
BtgI CCRYGG 1 cut(s) 459
BtrI CACGTC 2 cut(s) 199, 946
BtsCI GGATG 2 cut(s) 294, 631
BveI ACCTGC 1 cut(s) 776
Cac8I GCNNGC 4 cut(s) 272, 304, 329, 958
CfoI GCGC 3 cut(s) 107, 351, 631
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 71
Csp6I GTAC 5 cut(s) 37, 316, 391, 415, 424
CviAII CATG 7 cut(s) 34, 100, 136, 145, 346, 405, 431
CviQI GTAC 5 cut(s) 37, 316, 391, 415, 424
DdeI CTNAG 1 cut(s) 164
DinI GGCGCC 1 cut(s) 106
DpnI GATC 3 cut(s) 77, 569, 861
DpnII GATC 3 cut(s) 75, 567, 859
EaeI YGGCCR 2 cut(s) 407, 427
EciI GGCGGA 1 cut(s) 656
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 222
Eco32I GATATC 1 cut(s) 741
Eco57I CTGAAG 2 cut(s) 459, 548
Eco72I CACGTG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 4 cut(s) 78, 225, 297, 960
EcoRV GATATC 1 cut(s) 741
EcoT38I GRGCYC 1 cut(s) 222
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 930
FaeI CATG 7 cut(s) 37, 103, 139, 148, 349, 408, 434
FatI CATG 7 cut(s) 33, 99, 135, 144, 345, 404, 430
FauI CCCGC 1 cut(s) 643
FblI GTMKAC 2 cut(s) 240, 942
Fnu4HI GCNGC 6 cut(s) 31, 66, 211, 410, 435, 648
FokI GGATG 2 cut(s) 281, 638
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 6 cut(s) 31, 66, 211, 410, 435, 648
FspBI CTAG 1 cut(s) 803
GlaI GCGC 3 cut(s) 106, 350, 630
GluI GCNGC 6 cut(s) 31, 66, 211, 410, 435, 648
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 5 cut(s) 210, 302, 409, 429, 960
HapII CCGG 4 cut(s) 53, 181, 418, 551
HgaI GACGC 1 cut(s) 71
HhaI GCGC 3 cut(s) 107, 351, 631
Hin1I GRCGYC 2 cut(s) 105, 939
Hin1II CATG 7 cut(s) 37, 103, 139, 148, 349, 408, 434
Hin6I GCGC 3 cut(s) 105, 349, 629
HinP1I GCGC 3 cut(s) 105, 349, 629
HincII GTYRAC 4 cut(s) 85, 241, 397, 943
HindII GTYRAC 4 cut(s) 85, 241, 397, 943
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 6 cut(s) 148, 464, 470, 482, 490, 718
HpaII CCGG 4 cut(s) 53, 181, 418, 551
HphI GGTGA 3 cut(s) 82, 841, 914
Hpy166II GTNNAC 6 cut(s) 85, 232, 241, 337, 397, 943
Hpy188I TCNGA 3 cut(s) 469, 505, 572
Hpy188III TCNNGA 5 cut(s) 122, 181, 479, 538, 722
Hpy8I GTNNAC 6 cut(s) 85, 232, 241, 337, 397, 943
Hpy99I CGWCG 6 cut(s) 177, 245, 311, 608, 944, 947
HpyAV CCTTC 2 cut(s) 128, 508
HpyCH4III ACNGT 2 cut(s) 173, 499
HpyCH4IV ACGT 7 cut(s) 198, 354, 393, 590, 697, 939, 945
HpyCH4V TGCA 5 cut(s) 404, 434, 556, 771, 853
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 440, 647
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 7 cut(s) 198, 354, 393, 590, 697, 939, 945
Hsp92I GRCGYC 2 cut(s) 105, 939
Hsp92II CATG 7 cut(s) 37, 103, 139, 148, 349, 408, 434
HspAI GCGC 3 cut(s) 105, 349, 629
KasI GGCGCC 1 cut(s) 104
Kpn2I TCCGGA 1 cut(s) 180
Kzo9I GATC 3 cut(s) 75, 567, 859
LmnI GCTCC 4 cut(s) 160, 183, 694, 784
Lsp1109I GCAGC 2 cut(s) 446, 634
LweI GCATC 5 cut(s) 195, 222, 616, 796, 840
MaeI CTAG 1 cut(s) 803
MaeII ACGT 7 cut(s) 198, 354, 393, 590, 697, 939, 945
MaeIII GTNAC 3 cut(s) 167, 586, 706
MalI GATC 3 cut(s) 77, 569, 861
MboI GATC 3 cut(s) 75, 567, 859
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 1 cut(s) 19
Mly113I GGCGCC 1 cut(s) 105
MlyI GAGTC 2 cut(s) 484, 712
MroI TCCGGA 1 cut(s) 180
MseI TTAA 2 cut(s) 678, 810
MspA1I CMGCKG 2 cut(s) 412, 437
MspI CCGG 4 cut(s) 53, 181, 418, 551
MspR9I CCNGG 5 cut(s) 53, 80, 227, 299, 962
Mva1269I GAATGC 2 cut(s) 552, 877
MvaI CCWGG 4 cut(s) 80, 227, 299, 962
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 3 cut(s) 183, 440, 647
NarI GGCGCC 1 cut(s) 105
NciI CCSGG 1 cut(s) 53
NdeII GATC 3 cut(s) 75, 567, 859
NlaIII CATG 7 cut(s) 37, 103, 139, 148, 349, 408, 434
NlaIV GGNNCC 2 cut(s) 106, 819
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 1 cut(s) 37
NspV TTCGAA 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 122
PceI AGGCCT 1 cut(s) 302
PctI GAATGC 2 cut(s) 552, 877
PfeI GAWTC 4 cut(s) 148, 464, 470, 482
PkrI GCNGC 6 cut(s) 32, 67, 212, 411, 436, 649
PleI GAGTC 2 cut(s) 484, 712
PluTI GGCGCC 1 cut(s) 108
PmaCI CACGTG 1 cut(s) 591
PmlI CACGTG 1 cut(s) 591
PpsI GAGTC 2 cut(s) 484, 712
Ppu21I YACGTR 1 cut(s) 591
Psp6I CCWGG 4 cut(s) 78, 225, 297, 960
PspCI CACGTG 1 cut(s) 591
PspGI CCWGG 4 cut(s) 78, 225, 297, 960
PspN4I GGNNCC 2 cut(s) 106, 819
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 773
PsuI RGATCY 1 cut(s) 567
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 5 cut(s) 38, 317, 392, 416, 425
RsaNI GTAC 5 cut(s) 37, 316, 391, 415, 424
SalI GTCGAC 2 cut(s) 239, 941
SaqAI TTAA 2 cut(s) 678, 810
SatI GCNGC 6 cut(s) 31, 66, 211, 410, 435, 648
Sau3AI GATC 3 cut(s) 75, 567, 859
Sau96I GGNCC 1 cut(s) 208
SbfI CCTGCAGG 1 cut(s) 773
SchI GAGTC 2 cut(s) 484, 712
ScrFI CCNGG 5 cut(s) 53, 80, 227, 299, 962
SdaI CCTGCAGG 1 cut(s) 773
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 5 cut(s) 195, 222, 616, 796, 840
SfcI CTRYAG 1 cut(s) 769
SfoI GGCGCC 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 122
SfuI TTCGAA 1 cut(s) 634
SgrDI CGTCGACG 1 cut(s) 941
SlaI CTCGAG 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 122, 265
SmoI CTYRAG 2 cut(s) 122, 265
SpeI ACTAGT 1 cut(s) 802
Sse8387I CCTGCAGG 1 cut(s) 773
Sse9I AATT 1 cut(s) 19
SseBI AGGCCT 1 cut(s) 302
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 1 cut(s) 803
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 5 cut(s) 51, 78, 225, 297, 960
TaaI ACNGT 2 cut(s) 173, 499
TaiI ACGT 7 cut(s) 201, 357, 396, 593, 700, 942, 948
TaqI TCGA 8 cut(s) 123, 216, 240, 480, 603, 634, 723, 942
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 315
TauI GCSGC 4 cut(s) 33, 68, 213, 412
TfiI GAWTC 4 cut(s) 148, 464, 470, 482
Tru1I TTAA 2 cut(s) 678, 810
Tru9I TTAA 2 cut(s) 678, 810
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 2 cut(s) 434, 647
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 1 cut(s) 605
TspGWI ACGGA 2 cut(s) 173, 476
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 122
XmiI GTMKAC 2 cut(s) 240, 942
XspI CTAG 1 cut(s) 803
ZraI GACGTC 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.