Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005275

Physical Location & Seq

Genomic Coordinates Reverse (-)

13338736 .. 13339715

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTTCCAATACGCCGAATTTGGAGTGCCGCATGTACGAAGCAAAATACCCGGAGGTAGACGCGGCGGTGATGATCCAGGTCATCAATAGCATTGACAACGTGGGTGCCAACGTCTCCCTCCTCGAGTACAACAACATGGAGGGCATGATTCCCTTGACGGAGCTAAGCAATCGTCGCCTCCGGAGCATCAACAAACACGTCAAGGTGGGCCGCATCGAGCCCGTCCTGGTTTACAAGGTCGACGAACACAAGGGCTACATAGACTTGAGCAAGCGGAGGCTTTCCCAAGAAGACATCCAGGCCTGCGACGAAAAGTACAACAAGAGCAAGCTCGTCCACTCCATCATGCGCCACGTGGCCGAGACTTTGAACATTGATTTGGAGGAGTTGTACGTCAACATTGCATGGCCGCTGTACCGGAAGTACGGCCATGCAGCTGAAGCTTTCAAAATAATCGCCACGGATTCCGATTCGATTCTCGACTCCCTCACTCCCGCCATGTCGGAGGAGGTGAAGGAATGTCTGCTGAAGAACATCAGGAGAAGAATGCCGGTGCAACCATTGAAGATCCGAGCCGATATTGAAGTCACGTGTTATCAATTAGACGGCGTTCTTCATATCAAGGATGCGCTTCGAAAGGCGGAAGCTGCGGGGAACGATGAGTGTCCTGTGAAAGTTAAGCTGATTGCTCCTCCGCGTTATGTTGTTACTACGCAGACTCTCGATAAGAAGCAAGGGATATCGGTTTTGAGCGAAGCCATAGAAATCTGCAGGGAAGCAATGGAGCATCACAAGGGGAAACTAGTAGTGAAGGAGGCACCGAGAGTGGTTATGAGTAGTGGTGATGAGGGTGAGGAAGAAGAAGAAGACACAGGATTGGGAGACGTCGACGTGGAGAACGCAGGCCAGGGCATTATTGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005850 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010564 GO:0010948 GO:0019538 GO:0022402 GO:0031570 GO:0031571 GO:0032991 GO:0033290 GO:0033554 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043614 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0044877 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070993 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

ko03013 ko04138 ko04140 ko04141 ko04210 ko04932 ko05160 ko05162 ko05164 ko05168 map03013 map04138 map04140 map04141 map04210 map04932 map05160 map05162 map05164 map05168

Pfam Domains

Protein Families

EIF_2_alpha S1

Protein Analysis

309

Amino Acids

34.77

Weight (kDa)

5.22

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1	PF00575	29 - 93	2.9e-11	S1 RNA binding domain
EIF_2_alpha	PF07541	131 - 244	6.6e-35	Eukaryotic translation initiation factor 2 alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05470
fragaria_vesca	FvH4_6g15100 FvH4_7g25050
malus_domestica	MD01G1157300.v1.1 MD07G1226100.v1.1
prunus_persica	Prupe.2G255200_v2.0.a1
pyrus_communis	pycom01g17410 pycom07g20450
rosa_chinensis	RchiOBHm_Chr1g0370911 RchiOBHm_Chr3g0468371
rosa_laevigata	RLG00000024436 RLG00000026999
rosa_multiflora	Rmu_co7996168.1_g000001 Rmu_sc0001018.1_g000002 Rmu_sc0004353.1_g000010 Rmu_sc0014003.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286130 Rroxscaffold_6G00412840
rosa_rugosa	Rorug01G0360200 Rorug03G0095000
rosa_samantha	Rh1AG370200 Rh1BG333800 Rh1CG347100 Rh1DG365000 Rh3AG142800 Rh3BG165200 Rh3DG164800
rosa_wichuraiana	Rw1G032580 Rw3G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	891
AccB1I	GGYRCC	2 cut(s)	107, 820
AccI	GTMKAC	3 cut(s)	60, 243, 891
AccII	CGCG	2 cut(s)	65, 700
AccIII	TCCGGA	1 cut(s)	183
AclWI	GGATC	2 cut(s)	70, 565
AcoI	YGGCCR	3 cut(s)	360, 410, 430
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	2 cut(s)	462, 551
AcvI	CACGTG	2 cut(s)	358, 594
AcyI	GRCGYC	1 cut(s)	888
AfaI	GTAC	6 cut(s)	38, 131, 320, 395, 419, 428
AflIII	ACRYGT	2 cut(s)	199, 593
AgsI	TTSAA	5 cut(s)	373, 451, 568, 587, 923
AhlI	ACTAGT	1 cut(s)	805
AjiI	CACGTC	2 cut(s)	202, 895
AjnI	CCWGG	4 cut(s)	78, 228, 300, 909
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	6 cut(s)	166, 334, 440, 446, 650, 685
AluI	AGCT	6 cut(s)	166, 334, 440, 446, 650, 685
Alw26I	GTCTC	3 cut(s)	121, 359, 879
AlwI	GGATC	2 cut(s)	70, 565
Ama87I	CYCGRG	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	6 cut(s)	211, 303, 360, 410, 430, 907
ApeKI	GCWGC	2 cut(s)	437, 650
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	354, 634
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	82, 526, 857, 866
AsuII	TTCGAA	1 cut(s)	637
AvaI	CYCGRG	1 cut(s)	125
BanI	GGYRCC	2 cut(s)	107, 820
BanII	GRGCYC	1 cut(s)	225
BbrPI	CACGTG	2 cut(s)	358, 594
BbsI	GAAGAC	2 cut(s)	300, 876
BbvI	GCAGC	2 cut(s)	449, 637
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	445, 625
BciT130I	CCWGG	4 cut(s)	80, 230, 302, 911
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	3 cut(s)	121, 359, 879
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	1 cut(s)	806
BfmI	CTRYAG	1 cut(s)	772
BisI	GCNGC	6 cut(s)	31, 66, 214, 413, 438, 651
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	6 cut(s)	32, 67, 215, 414, 439, 652
Bme1390I	CCNGG	5 cut(s)	53, 80, 230, 302, 911
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	2 cut(s)	202, 895
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	109, 822
BmrFI	CCNGG	5 cut(s)	53, 80, 230, 302, 911
BmsI	GCATC	4 cut(s)	198, 225, 619, 799
BpiI	GAAGAC	2 cut(s)	300, 876
Bpu1102I	GCTNAGC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	2 cut(s)	358, 594
BsaHI	GRCGYC	1 cut(s)	888
BsaJI	CCNNGG	2 cut(s)	462, 910
BsaWI	WCCGGW	2 cut(s)	183, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bse118I	RCCGGY	1 cut(s)	553
Bse3DI	GCAATG	2 cut(s)	402, 789
BseAI	TCCGGA	1 cut(s)	183
BseBI	CCWGG	4 cut(s)	80, 230, 302, 911
BseDI	CCNNGG	2 cut(s)	462, 910
BseGI	GGATG	2 cut(s)	297, 634
BseMI	GCAATG	2 cut(s)	402, 789
BseRI	GAGGAG	4 cut(s)	113, 401, 524, 684
BseXI	GCAGC	2 cut(s)	449, 637
Bsh1236I	CGCG	2 cut(s)	65, 700
BshFI	GGCC	6 cut(s)	213, 305, 362, 412, 432, 909
BshNI	GGYRCC	2 cut(s)	107, 820
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	4 cut(s)	53, 184, 421, 554
BsmAI	GTCTC	3 cut(s)	121, 359, 879
BsmBI	CGTCTC	2 cut(s)	121, 879
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	6 cut(s)	213, 305, 362, 412, 432, 909
BsoBI	CYCGRG	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	75, 570
Bsp1720I	GCTNAGC	1 cut(s)	167
BspANI	GGCC	6 cut(s)	213, 305, 362, 412, 432, 909
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	2 cut(s)	65, 700
BspLI	GGNNCC	2 cut(s)	109, 822
BspMAI	CTGCAG	1 cut(s)	776
BspPI	GGATC	2 cut(s)	70, 565
BspT104I	TTCGAA	1 cut(s)	637
BspT107I	GGYRCC	2 cut(s)	107, 820
BsrDI	GCAATG	2 cut(s)	402, 789
BsrFI	RCCGGY	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	462, 910
BssMI	GATC	2 cut(s)	75, 570
BssNI	GRCGYC	1 cut(s)	888
Bst2UI	CCWGG	4 cut(s)	80, 230, 302, 911
BstACI	GRCGYC	1 cut(s)	888
BstBAI	YACGTR	2 cut(s)	358, 594
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	4 cut(s)	275, 307, 332, 907
BstDEI	CTNAG	1 cut(s)	167
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	297, 634
BstFNI	CGCG	2 cut(s)	65, 700
BstHHI	GCGC	2 cut(s)	354, 634
BstKTI	GATC	2 cut(s)	78, 573
BstMAI	GTCTC	3 cut(s)	121, 359, 879
BstMBI	GATC	2 cut(s)	75, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 186, 443, 650
BstNI	CCWGG	4 cut(s)	80, 230, 302, 911
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	5 cut(s)	51, 78, 228, 300, 909
BstSFI	CTRYAG	1 cut(s)	772
BstUI	CGCG	2 cut(s)	65, 700
BstV1I	GCAGC	2 cut(s)	449, 637
BstV2I	GAAGAC	2 cut(s)	300, 876
BstX2I	RGATCY	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	570
BsuRI	GGCC	6 cut(s)	213, 305, 362, 412, 432, 909
BtgI	CCRYGG	1 cut(s)	462
BtrI	CACGTC	2 cut(s)	202, 895
BtsCI	GGATG	2 cut(s)	297, 634
Cac8I	GCNNGC	4 cut(s)	275, 307, 332, 907
CfoI	GCGC	2 cut(s)	354, 634
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	6 cut(s)	37, 130, 319, 394, 418, 427
CviAII	CATG	7 cut(s)	34, 139, 148, 349, 408, 434, 502
CviQI	GTAC	6 cut(s)	37, 130, 319, 394, 418, 427
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	77, 572
DpnII	GATC	2 cut(s)	75, 570
EaeI	YGGCCR	3 cut(s)	360, 410, 430
EciI	GGCGGA	1 cut(s)	659
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	744
Eco57I	CTGAAG	2 cut(s)	462, 551
Eco72I	CACGTG	2 cut(s)	358, 594
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	4 cut(s)	78, 228, 300, 909
EcoRV	GATATC	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	225
Esp3I	CGTCTC	2 cut(s)	121, 879
FaeI	CATG	7 cut(s)	37, 142, 151, 352, 411, 437, 505
FatI	CATG	7 cut(s)	33, 138, 147, 348, 407, 433, 501
FauI	CCCGC	2 cut(s)	505, 646
FblI	GTMKAC	3 cut(s)	60, 243, 891
Fnu4HI	GCNGC	6 cut(s)	31, 66, 214, 413, 438, 651
FokI	GGATG	2 cut(s)	284, 641
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	6 cut(s)	31, 66, 214, 413, 438, 651
FspBI	CTAG	1 cut(s)	806
GlaI	GCGC	2 cut(s)	353, 633
GluI	GCNGC	6 cut(s)	31, 66, 214, 413, 438, 651
HaeIII	GGCC	6 cut(s)	213, 305, 362, 412, 432, 909
HapII	CCGG	4 cut(s)	53, 184, 421, 554
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	354, 634
Hin1I	GRCGYC	1 cut(s)	888
Hin1II	CATG	7 cut(s)	37, 142, 151, 352, 411, 437, 505
Hin6I	GCGC	2 cut(s)	352, 632
HinP1I	GCGC	2 cut(s)	352, 632
HincII	GTYRAC	3 cut(s)	244, 400, 892
HindII	GTYRAC	3 cut(s)	244, 400, 892
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	6 cut(s)	151, 467, 473, 478, 485, 721
HpaII	CCGG	4 cut(s)	53, 184, 421, 554
HphI	GGTGA	4 cut(s)	82, 526, 857, 866
Hpy166II	GTNNAC	6 cut(s)	61, 235, 244, 340, 400, 892
Hpy188I	TCNGA	3 cut(s)	472, 508, 575
Hpy188III	TCNNGA	4 cut(s)	184, 482, 541, 725
Hpy8I	GTNNAC	6 cut(s)	61, 235, 244, 340, 400, 892
Hpy99I	CGWCG	5 cut(s)	180, 248, 314, 893, 896
HpyAV	CCTTC	2 cut(s)	511, 808
HpyCH4IV	ACGT	8 cut(s)	102, 114, 201, 357, 396, 593, 888, 894
HpyCH4V	TGCA	4 cut(s)	407, 437, 559, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 186, 443, 650
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	8 cut(s)	102, 114, 201, 357, 396, 593, 888, 894
Hsp92I	GRCGYC	1 cut(s)	888
Hsp92II	CATG	7 cut(s)	37, 142, 151, 352, 411, 437, 505
HspAI	GCGC	2 cut(s)	352, 632
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	75, 570
LmnI	GCTCC	4 cut(s)	163, 186, 697, 787
Lsp1109I	GCAGC	2 cut(s)	449, 637
LweI	GCATC	4 cut(s)	198, 225, 619, 799
MaeI	CTAG	1 cut(s)	806
MaeII	ACGT	8 cut(s)	102, 114, 201, 357, 396, 593, 888, 894
MaeIII	GTNAC	2 cut(s)	589, 709
MalI	GATC	2 cut(s)	77, 572
MboI	GATC	2 cut(s)	75, 570
MboII	GAAGA	9 cut(s)	305, 544, 558, 580, 608, 872, 875, 878, 881
MflI	RGATCY	1 cut(s)	570
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	2 cut(s)	19, 602
MlyI	GAGTC	2 cut(s)	479, 715
MmeI	TCCRAC	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	183
MseI	TTAA	1 cut(s)	681
MspA1I	CMGCKG	2 cut(s)	415, 440
MspI	CCGG	4 cut(s)	53, 184, 421, 554
MspR9I	CCNGG	5 cut(s)	53, 80, 230, 302, 911
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	4 cut(s)	80, 230, 302, 911
MvnI	CGCG	2 cut(s)	65, 700
MwoI	GCNNNNNNNGC	4 cut(s)	177, 186, 443, 650
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	75, 570
NlaIII	CATG	7 cut(s)	37, 142, 151, 352, 411, 437, 505
NlaIV	GGNNCC	2 cut(s)	109, 822
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	589
NspI	RCATGY	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	637
PaeR7I	CTCGAG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	305
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	4 cut(s)	151, 467, 473, 478
PkrI	GCNGC	6 cut(s)	32, 67, 215, 414, 439, 652
PleI	GAGTC	2 cut(s)	479, 715
PmaCI	CACGTG	2 cut(s)	358, 594
PmlI	CACGTG	2 cut(s)	358, 594
PpsI	GAGTC	2 cut(s)	479, 715
Ppu21I	YACGTR	2 cut(s)	358, 594
Psp6I	CCWGG	4 cut(s)	78, 228, 300, 909
PspCI	CACGTG	2 cut(s)	358, 594
PspGI	CCWGG	4 cut(s)	78, 228, 300, 909
PspN4I	GGNNCC	2 cut(s)	109, 822
PspPI	GGNCC	1 cut(s)	211
PspXI	VCTCGAGB	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	570
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	6 cut(s)	38, 131, 320, 395, 419, 428
RsaNI	GTAC	6 cut(s)	37, 130, 319, 394, 418, 427
SalI	GTCGAC	2 cut(s)	242, 890
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	6 cut(s)	31, 66, 214, 413, 438, 651
Sau3AI	GATC	2 cut(s)	75, 570
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	479, 715
ScrFI	CCNGG	5 cut(s)	53, 80, 230, 302, 911
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	4 cut(s)	198, 225, 619, 799
SfcI	CTRYAG	1 cut(s)	772
Sfr274I	CTCGAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	637
SgrDI	CGTCGACG	1 cut(s)	890
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	125, 268
SmoI	CTYRAG	2 cut(s)	125, 268
SpeI	ACTAGT	1 cut(s)	805
Sse9I	AATT	2 cut(s)	19, 602
SseBI	AGGCCT	1 cut(s)	305
SspMI	CTAG	1 cut(s)	806
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	5 cut(s)	51, 78, 228, 300, 909
TaiI	ACGT	8 cut(s)	105, 117, 204, 360, 399, 596, 891, 897
TaqI	TCGA	8 cut(s)	126, 219, 243, 476, 483, 637, 726, 891
TasI	AATT	2 cut(s)	19, 602
TatI	WGTACW	2 cut(s)	129, 318
TauI	GCSGC	4 cut(s)	33, 68, 216, 415
TfiI	GAWTC	4 cut(s)	151, 467, 473, 478
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	2 cut(s)	437, 650
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	1 cut(s)	608
TspGWI	ACGGA	2 cut(s)	176, 479
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	3 cut(s)	60, 243, 891
XspI	CTAG	1 cut(s)	806
ZraI	GACGTC	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.