FvH4_6g15100

Eukaryotic translation initiation factor 2

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
9381451 .. 9382425
975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15100.t1

Sequence Viewer

Length: 975 bp
ATGGCGCCAAACCTAGAGTGCCGCATGTACGAAGCAAAATACCCGCAGGTAGACGCGGCGGTGATGATCCAGGTCAACAGCATCGACGACGAGAATGGCGCCTACGTCTCCCTTCTCGAGTACAACAACATGGAGGGCTTTATTCCCGTGACAGAGCTAAGCAACCGCCGCCTCCGGAGCATTCACAAACACGTCAAGGTTGGCCGCATCGAGCCCTCCCTGGTTTTCAAGGTCGACGAAACCAAGGGCTACGTCGACTTGAGCAAGCGGAGGCTCTCCCCGGAGGACATCCAGGCCTGCGACGACAAGTACAACAAGAGCAAGCTCGTCCACTCCATCATGCGCCACGTCGCCGAGACTGTGAATATCGACTTGGAGGAGTTGTACGTGAACATTGCATGGCCGCTGTACAAGAAGTACGGCCATGCAGCTGAAGCTTTCAAAATAATTGCTACGGATTCCGATTTGGTTCTCGACTCCCTCGCCCCCGCCGTGTCGGAGGAGGTGAAGGAGTGTCTGATTAAGAACATCAGGAGAAGAATGCCGGTGCAACCACTGAGAATCCGAGCAGATATTGATGTGACATGTTATCACTTCGACGGCGTTGTTCATATTAAGGACGCGCTCCGGAGGGCGGAAGCTGCCGGGAACGATGAGTGTCCGGTGAAGGTTAAGCTGATTGCTCCACCGCGCTACGTTGTTACGACGCAGACTCTGGATAAGAAGCAAGGGATATCAATTTTGAGCGAAGCTATTAAAGCCTGCAAGGAAGCAATAGAGAAGAGCAAGGGGAAACTGGTAGTGAAGGAGGTACCGAGAGTGGTGAGTGAGGTGGAGGATAAGATGCATGCAGATCAGGAGAAGAATGAGGGGGTTATGAGTAGTGGTGATGAAGGTGAGGAAGAAGAAGAAGAAGACACAGGATTGGGAGACGTGGACGTGGAGAACGCAGGCCAGGGCATTATAGTTGATTGA

Protein Analysis

325

Amino Acids

36.35

Weight (kDa)

5.13

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 15 - 90 2.8e-10 S1 RNA binding domain
EIF_2_alpha PF07541 128 - 241 1.2e-33 Eukaryotic translation initiation factor 2 alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
Acc65I GGTACC 1 cut(s) 811
AccB1I GGYRCC 3 cut(s) 4, 98, 811
AccI GTMKAC 3 cut(s) 51, 234, 255
AccII CGCG 3 cut(s) 56, 623, 691
AccIII TCCGGA 2 cut(s) 174, 627
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 3 cut(s) 202, 401, 421
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 2 cut(s) 5, 99
AfaI GTAC 7 cut(s) 29, 122, 311, 386, 410, 419, 813
AfiI CCNNNNNNNGG 1 cut(s) 634
AflIII ACRYGT 2 cut(s) 190, 584
AgsI TTSAA 2 cut(s) 229, 442
AjiI CACGTC 4 cut(s) 193, 349, 934, 940
AjnI CCWGG 4 cut(s) 69, 219, 291, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 7 cut(s) 157, 325, 431, 437, 641, 676, 752
AluI AGCT 7 cut(s) 157, 325, 431, 437, 641, 676, 752
Alw26I GTCTC 3 cut(s) 112, 350, 924
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 715
Ama87I CYCGRG 1 cut(s) 116
Aor13HI TCCGGA 2 cut(s) 174, 627
AoxI GGCC 5 cut(s) 202, 294, 401, 421, 952
ApeKI GCWGC 2 cut(s) 428, 641
Asp718I GGTACC 1 cut(s) 811
AspLEI GCGC 5 cut(s) 7, 101, 345, 625, 693
AsuC2I CCSGG 2 cut(s) 281, 646
AsuHPI GGTGA 6 cut(s) 73, 517, 676, 835, 899, 908
AvaI CYCGRG 1 cut(s) 116
BanI GGYRCC 3 cut(s) 4, 98, 811
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 921
BbvI GCAGC 2 cut(s) 440, 628
BccI CCATC 1 cut(s) 344
BceAI ACGGC 3 cut(s) 436, 476, 616
BciT130I CCWGG 4 cut(s) 71, 221, 293, 956
BcnI CCSGG 2 cut(s) 281, 646
BcoDI GTCTC 3 cut(s) 112, 350, 924
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 2 cut(s) 8, 102
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 7 cut(s) 22, 57, 169, 205, 404, 429, 642
BlpI GCTNAGC 1 cut(s) 158
BlsI GCNGC 7 cut(s) 23, 58, 170, 206, 405, 430, 643
Bme1390I CCNGG 6 cut(s) 71, 221, 281, 293, 646, 956
BmeT110I CYCGRG 1 cut(s) 116
BmgBI CACGTC 4 cut(s) 193, 349, 934, 940
BmiI GGNNCC 3 cut(s) 6, 100, 813
BmrFI CCNGG 6 cut(s) 71, 221, 281, 293, 646, 956
BmsI GCATC 3 cut(s) 90, 216, 834
BpiI GAAGAC 1 cut(s) 921
Bpu1102I GCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 280
BpuMI CCSGG 2 cut(s) 281, 646
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 2 cut(s) 5, 99
BsaJI CCNNGG 4 cut(s) 219, 243, 279, 955
BsaWI WCCGGW 3 cut(s) 174, 627, 661
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 801
Bse3DI GCAATG 1 cut(s) 393
BseAI TCCGGA 2 cut(s) 174, 627
BseBI CCWGG 4 cut(s) 71, 221, 293, 956
BseDI CCNNGG 4 cut(s) 219, 243, 279, 955
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 548
BseNI ACTGG 1 cut(s) 801
BseRI GAGGAG 2 cut(s) 392, 515
BseXI GCAGC 2 cut(s) 440, 628
Bsh1236I CGCG 3 cut(s) 56, 623, 691
BshFI GGCC 5 cut(s) 204, 296, 403, 423, 954
BshNI GGYRCC 3 cut(s) 4, 98, 811
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 6 cut(s) 175, 281, 545, 628, 645, 662
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 3 cut(s) 112, 350, 924
BsmBI CGTCTC 2 cut(s) 112, 924
BsmI GAATGC 2 cut(s) 180, 546
BsnI GGCC 5 cut(s) 204, 296, 403, 423, 954
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 216
Bsp13I TCCGGA 2 cut(s) 174, 627
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 2 cut(s) 66, 853
Bsp1720I GCTNAGC 1 cut(s) 158
BspANI GGCC 5 cut(s) 204, 296, 403, 423, 954
BspCNI CTCAG 1 cut(s) 549
BspEI TCCGGA 2 cut(s) 174, 627
BspFNI CGCG 3 cut(s) 56, 623, 691
BspLI GGNNCC 3 cut(s) 6, 100, 813
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 776
BspT107I GGYRCC 3 cut(s) 4, 98, 811
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 1 cut(s) 801
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 4 cut(s) 219, 243, 279, 955
BssMI GATC 2 cut(s) 66, 853
BssNI GRCGYC 2 cut(s) 5, 99
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 4 cut(s) 71, 221, 293, 956
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 776
BstACI GRCGYC 2 cut(s) 5, 99
BstAUI TGTACA 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 6 cut(s) 266, 298, 323, 763, 849, 952
BstDEI CTNAG 2 cut(s) 158, 557
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 3 cut(s) 56, 623, 691
BstH2I RGCGCY 2 cut(s) 8, 102
BstHHI GCGC 5 cut(s) 7, 101, 345, 625, 693
BstKTI GATC 2 cut(s) 69, 856
BstMAI GTCTC 3 cut(s) 112, 350, 924
BstMBI GATC 2 cut(s) 66, 853
BstMWI GCNNNNNNNGC 5 cut(s) 168, 177, 434, 641, 758
BstNI CCWGG 4 cut(s) 71, 221, 293, 956
BstNSI RCATGY 3 cut(s) 28, 588, 851
BstSCI CCNGG 6 cut(s) 69, 219, 279, 291, 644, 954
BstUI CGCG 3 cut(s) 56, 623, 691
BstV1I GCAGC 2 cut(s) 440, 628
BstV2I GAAGAC 1 cut(s) 921
BsuRI GGCC 5 cut(s) 204, 296, 403, 423, 954
BtrI CACGTC 4 cut(s) 193, 349, 934, 940
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 554
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 6 cut(s) 266, 298, 323, 763, 849, 952
CaiI CAGNNNCTG 1 cut(s) 715
CfoI GCGC 5 cut(s) 7, 101, 345, 625, 693
Cfr10I RCCGGY 1 cut(s) 544
CseI GACGC 3 cut(s) 62, 629, 715
Csp6I GTAC 7 cut(s) 28, 121, 310, 385, 409, 418, 812
CviAII CATG 7 cut(s) 25, 130, 340, 399, 425, 585, 848
CviQI GTAC 7 cut(s) 28, 121, 310, 385, 409, 418, 812
DdeI CTNAG 2 cut(s) 158, 557
DinI GGCGCC 2 cut(s) 6, 100
DpnI GATC 2 cut(s) 68, 855
DpnII GATC 2 cut(s) 66, 853
EaeI YGGCCR 3 cut(s) 202, 401, 421
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
EciI GGCGGA 1 cut(s) 650
Eco130I CCWWGG 1 cut(s) 243
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 735
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 4 cut(s) 69, 219, 291, 954
EcoRV GATATC 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 849
EcoT38I GRGCYC 1 cut(s) 216
EgeI GGCGCC 2 cut(s) 6, 100
EheI GGCGCC 2 cut(s) 6, 100
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 2 cut(s) 112, 924
FaeI CATG 7 cut(s) 28, 133, 343, 402, 428, 588, 851
FatI CATG 7 cut(s) 24, 129, 339, 398, 424, 584, 847
FauI CCCGC 2 cut(s) 51, 496
FblI GTMKAC 3 cut(s) 51, 234, 255
Fnu4HI GCNGC 7 cut(s) 22, 57, 169, 205, 404, 429, 642
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 7 cut(s) 22, 57, 169, 205, 404, 429, 642
FspBI CTAG 1 cut(s) 14
GlaI GCGC 5 cut(s) 6, 100, 344, 624, 692
GluI GCNGC 7 cut(s) 22, 57, 169, 205, 404, 429, 642
HaeII RGCGCY 2 cut(s) 8, 102
HaeIII GGCC 5 cut(s) 204, 296, 403, 423, 954
HapII CCGG 6 cut(s) 175, 281, 545, 628, 645, 662
HgaI GACGC 3 cut(s) 62, 629, 715
HhaI GCGC 5 cut(s) 7, 101, 345, 625, 693
Hin1I GRCGYC 2 cut(s) 5, 99
Hin1II CATG 7 cut(s) 28, 133, 343, 402, 428, 588, 851
Hin6I GCGC 5 cut(s) 5, 99, 343, 623, 691
HinP1I GCGC 5 cut(s) 5, 99, 343, 623, 691
HincII GTYRAC 3 cut(s) 76, 235, 256
HindII GTYRAC 3 cut(s) 76, 235, 256
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 4 cut(s) 458, 476, 561, 712
HpaII CCGG 6 cut(s) 175, 281, 545, 628, 645, 662
HphI GGTGA 6 cut(s) 73, 517, 676, 835, 899, 908
Hpy166II GTNNAC 7 cut(s) 52, 76, 235, 256, 331, 391, 937
Hpy188I TCNGA 4 cut(s) 463, 499, 519, 566
Hpy188III TCNNGA 7 cut(s) 116, 175, 473, 532, 628, 716, 857
Hpy8I GTNNAC 7 cut(s) 52, 76, 235, 256, 331, 391, 937
Hpy99I CGWCG 8 cut(s) 89, 92, 239, 257, 305, 353, 602, 709
HpyAV CCTTC 5 cut(s) 122, 502, 661, 799, 887
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 8 cut(s) 105, 192, 252, 348, 387, 696, 933, 939
HpyCH4V TGCA 6 cut(s) 398, 428, 550, 765, 847, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 177, 434, 641, 758
HpyF3I CTNAG 2 cut(s) 158, 557
HpySE526I ACGT 8 cut(s) 105, 192, 252, 348, 387, 696, 933, 939
Hsp92I GRCGYC 2 cut(s) 5, 99
Hsp92II CATG 7 cut(s) 28, 133, 343, 402, 428, 588, 851
HspAI GCGC 5 cut(s) 5, 99, 343, 623, 691
KasI GGCGCC 2 cut(s) 4, 98
Kpn2I TCCGGA 2 cut(s) 174, 627
KpnI GGTACC 1 cut(s) 815
Kzo9I GATC 2 cut(s) 66, 853
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 3 cut(s) 177, 630, 688
Lsp1109I GCAGC 2 cut(s) 440, 628
LweI GCATC 3 cut(s) 90, 216, 834
MaeI CTAG 1 cut(s) 14
MaeII ACGT 8 cut(s) 105, 192, 252, 348, 387, 696, 933, 939
MaeIII GTNAC 3 cut(s) 148, 580, 700
MalI GATC 2 cut(s) 68, 855
MboI GATC 2 cut(s) 66, 853
MboII GAAGA 8 cut(s) 549, 793, 874, 914, 917, 920, 923, 926
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 2 cut(s) 447, 738
Mly113I GGCGCC 2 cut(s) 5, 99
MlyI GAGTC 2 cut(s) 470, 706
MmeI TCCRAC 1 cut(s) 477
Mph1103I ATGCAT 1 cut(s) 849
MroI TCCGGA 2 cut(s) 174, 627
MseI TTAA 4 cut(s) 522, 615, 672, 756
MspA1I CMGCKG 2 cut(s) 406, 431
MspI CCGG 6 cut(s) 175, 281, 545, 628, 645, 662
MspR9I CCNGG 6 cut(s) 71, 221, 281, 293, 646, 956
Mva1269I GAATGC 2 cut(s) 180, 546
MvaI CCWGG 4 cut(s) 71, 221, 293, 956
MvnI CGCG 3 cut(s) 56, 623, 691
MwoI GCNNNNNNNGC 5 cut(s) 168, 177, 434, 641, 758
NarI GGCGCC 2 cut(s) 5, 99
NciI CCSGG 2 cut(s) 281, 646
NdeII GATC 2 cut(s) 66, 853
NlaIII CATG 7 cut(s) 28, 133, 343, 402, 428, 588, 851
NlaIV GGNNCC 3 cut(s) 6, 100, 813
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 148, 580
NsiI ATGCAT 1 cut(s) 849
NspI RCATGY 3 cut(s) 28, 588, 851
PaeI GCATGC 1 cut(s) 851
PaeR7I CTCGAG 1 cut(s) 116
PceI AGGCCT 1 cut(s) 296
PciI ACATGT 1 cut(s) 584
PciSI GCTCTTC 1 cut(s) 776
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 2 cut(s) 180, 546
PfeI GAWTC 2 cut(s) 458, 561
PkrI GCNGC 7 cut(s) 23, 58, 170, 206, 405, 430, 643
PleI GAGTC 2 cut(s) 470, 706
PluTI GGCGCC 2 cut(s) 8, 102
PpsI GAGTC 2 cut(s) 470, 706
Ppu21I YACGTR 1 cut(s) 388
PscI ACATGT 1 cut(s) 584
Psp6I CCWGG 4 cut(s) 69, 219, 291, 954
PspGI CCWGG 4 cut(s) 69, 219, 291, 954
PspN4I GGNNCC 3 cut(s) 6, 100, 813
PstNI CAGNNNCTG 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 7 cut(s) 29, 122, 311, 386, 410, 419, 813
RsaNI GTAC 7 cut(s) 28, 121, 310, 385, 409, 418, 812
SalI GTCGAC 2 cut(s) 233, 254
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 4 cut(s) 522, 615, 672, 756
SatI GCNGC 7 cut(s) 22, 57, 169, 205, 404, 429, 642
Sau3AI GATC 2 cut(s) 66, 853
SchI GAGTC 2 cut(s) 470, 706
ScrFI CCNGG 6 cut(s) 71, 221, 281, 293, 646, 956
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 3 cut(s) 90, 216, 834
SfoI GGCGCC 2 cut(s) 6, 100
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 116, 259
SmoI CTYRAG 2 cut(s) 116, 259
SphI GCATGC 1 cut(s) 851
Sse9I AATT 2 cut(s) 447, 738
SseBI AGGCCT 1 cut(s) 296
SspDI GGCGCC 2 cut(s) 4, 98
SspMI CTAG 1 cut(s) 14
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 6 cut(s) 69, 219, 279, 291, 644, 954
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 8 cut(s) 108, 195, 255, 351, 390, 699, 936, 942
TaqI TCGA 8 cut(s) 84, 117, 210, 234, 255, 369, 474, 597
TasI AATT 2 cut(s) 447, 738
TatI WGTACW 3 cut(s) 120, 309, 408
TauI GCSGC 5 cut(s) 24, 59, 171, 207, 406
TfiI GAWTC 2 cut(s) 458, 561
Tru1I TTAA 4 cut(s) 522, 615, 672, 756
Tru9I TTAA 4 cut(s) 522, 615, 672, 756
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 2 cut(s) 148, 580
TseI GCWGC 2 cut(s) 428, 641
Tsp45I GTSAC 2 cut(s) 148, 580
TspDTI ATGAA 2 cut(s) 599, 906
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 1 cut(s) 561
XceI RCATGY 3 cut(s) 28, 588, 851
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 3 cut(s) 51, 234, 255
XspI CTAG 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.