Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005275

Physical Location & Seq

Genomic Coordinates Reverse (-)

7409754 .. 7416744

Gene Structure 6991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2928 bp

ATGACGATAGCCAAAGCCAGAGTTAGTCTCAGAGATTATAATGAAGGTCATCACATGACGACGGCCAAAATGTTGAGACTGAGATTTTGGGGTTGCCTCATTGGTCTGGCTTGTTCTTGCTTCTTCCTAGTTGCGGTTGCACAAGTTACAAATCCTTCTGAAGTGGATGCATTGAGAGCAGTGAAGGGTAGTTTGATTGATTCCGGGAAGCATTTGAAGAATTGGGACAAAGGGGATCCATGTGAAGCGAATTGGACCGGAGTTTTGTGTTCCGGTGATGTTGGGACTGATGGATACTTGCATGTCCAAGAGCTGCAACTGCTGAGTATGAATCTCTCAGGAACTTTAGCGCCTGAGCTTGGCAAACTATCTCAACTTCTGATATTAGATTTCATGTGGAATGACTTAAGTGGGACTATACCGAAGGAGATAGGAAACATTACGTCCTTGAAACTCTTGCTCTTGAATGGAAACAAACTATCGGGTTCCTTGCCTGATGAGCTCGGTTATCTTGAAAATCTACATAGACTACAAGTTGACGAGAACCATCTTTCAGGTTCAATACCAAAATCATTTGTTAACTTGCGCGGCTTAAAACACCTCCATATGAACAACAACTCCTTCAGTGGCCAAATTCCATCTGAGATTTCTGAAATACCCGTTCTTCTTCATGTGCTCTTGGATAATAATAACTTATCTGGATATCTTCCACCAAAATTCTCCAACATACCAGAGTTGCGCATACTTCAACTCGATAACAACAACTTCACGGGAACTGAGATTCCAGCTACTTATGGAAACTTTTCCAGATTGGCAAAGTTAAGTCTCAGGAACTGCAGTTTGCAGGGAGCAATTCCTGATCTTAGCCGGATACCTAACCTCAGTTATCTAGATCTAAGCTGGAATCATCTTGCGGGACCGATACCATCACATGGACTTTCTGACAATATGACAACAATTGTTCTGTCAGATAATCACCTTAACGGATCTATTCCTGAAGGTTTCTCTCATTTTCCTCATCTTCAGAAATTGTCGCTCAAAAATAATCAGTTGAACGGTTCTGTCCCTGCTATATGGAGGAACATATCTTTTAGTACAAGAGCTAGACTTTCATTTGATCTCCGGAACAATTCACTCTCTAACATATTGGGAGAGCTGAATCCTCCAGCAAATGTCACCTTGAGGCTTGAAGGAAATCCTATTTGCAAGAATGCTAGCATAGAAAATATAAGCCCATTCTGTCAATCTGAAGCGAGAGATGGGATCTCCGAAGATTCAATAAATTCAACTCAACAGATGACCTGCTTTATTCAGGAATGTCCAGAGGATGATTTCTATGAATTTGTTCCATCTTCCCCTGTGCCATGCTTTTGTGCATCACCTATTATAGTTGAATATCGTCTGAAAAGCCCGAGCTTTTCTTACTTTGGTCCATATATACAGCAGTTTGAAGAGTATTTAACTAGTTGTCTAAAATTGGAGATTTACCAGTTATCAATTCGTTCCTTTGTCTGGGAAAAAGGGCCTCGTTTACGGATGCAGTTGAAGTTCTTCCCTGTGTATGGTGCTTCACACTTGCATAAATTAAATGCAAGTGAGGTTCTGCGAATTAGAGGCATCTTTACATCATGGGAATTTCCTCAGAATCATTTCTTTGGACCATATGAGCTACTCGACTTCAAACTGCTGGGACCTTATTCAAATATGATTGTTAAGAGACAAAAGATGGGCTTCAGTAAGGGTGTATTAGCAGCTGTTATAATAGGGGCCATTGCTTCTGTTGTCAGTATAACTGCAACAGTCATGCTTCTGTTCACAAGATGCACCAGAAACCGATACACACCACCTTCAAGGAGACACTCATCGTCCAAGATTTCTATGAGAATTGATGGTGTAAAGGCGTTCACTTTCAAAGAAATGACACTAGCCACCAGGAACTTTGATAGTGCAACTCAACTTGGACGAGGAGGCTATGGGAAAGTTTATAAAGGTATCTTATCTGATAACACAGCTGTAGCCATAAAACGTGCAGAAGCAGGATCCCTACAGGGTGAGAGAGAATTCTTGACCGAGATACAATTATTATCAAGGCTACACCATCGAAACTTAGTCTCTTTGGTAGGATACTGTGAAGAAGAAGGGGAGCAGATGCTGGTTTATGAATTCATGCCTAATGGTACCTTACGTGACTGGCTTTCTGATAAAACCAAGGGAAGCCTGGACTTCAGTATGAGATTACGTATTGCATTGGGTTCAGCCAAAGGAATTCTTTATCTCCATACTGAGGCAAATCCTCCTATATTCCACCGAGATATTAAATCCACAAATATACTTTTGGACTCCAACTATATCGCTAAGGTGGCCGATTTTGGACTCTCACGACTAGCACCTGTCCAGAATGATGAAGGGACTGGCCCTGCATACGTATCTACAGTCGTGAAAGGAACACCGGGCTACCTGGATCCAGAGTATTTCTTGACCAGTAAGTTAACAGACAAAAGCGATGTCTATAGCCTTGGAATTGTGTTTCTGGAGCTCTTGACTGGTGTGCTGCCAATATCACATGGCAAAAACATTGTTCGCGAGGTGAATATGGCTCATCAGTCAGGCTTGATGTTCTCCATTATAGATAGCAGAATGGGTTCGTATCCATCTGAATGTGTTCAGAGGTTTGTAGCTTTGGCCCTCAGATGTTGCCATGATAAACAAGACTACCGGCCATCAATGCTGGATGTGGTGAGGGAGCTCGAGAACATAATCAAACTTATGCCGGGAGCTGAAACAATGTTTTCACCATCTGGTTCCTCATACACTGAAAAATCATTAACTTCATCATCGACTTTTACTGGGGACCTATATATGTCCTCCTCCATCGTGGAAGGAAGCGATCTAACCAGTGGTGTAATCCCTACCATCTCGCCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005850 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010564 GO:0010948 GO:0019538 GO:0022402 GO:0031570 GO:0031571 GO:0032991 GO:0033290 GO:0033554 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043614 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0044877 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070993 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

ko03013 ko04138 ko04140 ko04141 ko04210 ko04932 ko05160 ko05162 ko05164 ko05168 map03013 map04138 map04140 map04141 map04210 map04932 map05160 map05162 map05164 map05168

Pfam Domains

Protein Families

EIF_2_alpha S1

Protein Analysis

975

Amino Acids

108.35

Weight (kDa)

7.11

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	52 - 91	2.2e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	115 - 206	3.2e-08	Leucine-rich repeat region
LRR_14	PF23598	192 - 375	1.3e-06	Leucine-rich repeat region
Pkinase	PF00069	649 - 914	1.1e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	651 - 916	4.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05470
fragaria_vesca	FvH4_6g15100 FvH4_7g25050
malus_domestica	MD01G1157300.v1.1 MD07G1226100.v1.1
prunus_persica	Prupe.2G255200_v2.0.a1
pyrus_communis	pycom01g17410 pycom07g20450
rosa_chinensis	RchiOBHm_Chr1g0370911 RchiOBHm_Chr3g0468371
rosa_laevigata	RLG00000024436 RLG00000026999
rosa_multiflora	Rmu_co7996168.1_g000001 Rmu_sc0001018.1_g000002 Rmu_sc0004353.1_g000010 Rmu_sc0014003.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286130 Rroxscaffold_6G00412840
rosa_rugosa	Rorug01G0360200 Rorug03G0095000
rosa_samantha	Rh1AG370200 Rh1BG333800 Rh1CG347100 Rh1DG365000 Rh3AG142800 Rh3BG165200 Rh3DG164800
rosa_wichuraiana	Rw1G032580 Rw3G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	39, 1760, 1986
Acc16I	TGCGCA	1 cut(s)	740
Acc36I	ACCTGC	1 cut(s)	1310
Acc65I	GGTACC	1 cut(s)	2177
AccB1I	GGYRCC	1 cut(s)	2177
AccB7I	CCANNNNNTGG	1 cut(s)	932
AccII	CGCG	2 cut(s)	588, 2583
AccIII	TCCGGA	1 cut(s)	1122
AciI	CCGC	3 cut(s)	134, 588, 914
AclWI	GGATC	8 cut(s)	230, 243, 994, 1271, 2034, 2047, 2456, 2469
AcoI	YGGCCR	4 cut(s)	63, 628, 2361, 2717
AcsI	RAATTY	8 cut(s)	633, 716, 1282, 1340, 1634, 2060, 2162, 2265
AcuI	CTGAAG	7 cut(s)	180, 607, 1007, 1017, 1269, 1717, 2209
AfaI	GTAC	2 cut(s)	1096, 2179
AfiI	CCNNNNNNNGG	6 cut(s)	133, 359, 932, 1512, 1562, 2284
AflII	CTTAAG	1 cut(s)	406
AhlI	ACTAGT	1 cut(s)	1463
AjnI	CCWGG	3 cut(s)	1931, 2217, 2457
AloI	GAACNNNNNNTCC	4 cut(s)	602, 634, 766, 798
Alw21I	GWGCWC	4 cut(s)	504, 678, 2538, 2748
Alw26I	GTCTC	6 cut(s)	32, 70, 830, 1711, 1849, 2116
AlwI	GGATC	8 cut(s)	230, 243, 994, 1271, 2034, 2047, 2456, 2469
AlwNI	CAGNNNCTG	2 cut(s)	834, 2152
Ama87I	CYCGRG	2 cut(s)	1411, 2747
Aor13HI	TCCGGA	1 cut(s)	1122
AoxI	GGCC	8 cut(s)	63, 628, 1523, 1767, 2361, 2413, 2682, 2717
ApeKI	GCWGC	3 cut(s)	313, 1751, 2551
ApoI	RAATTY	8 cut(s)	633, 716, 1282, 1340, 1634, 2060, 2162, 2265
ArsI	GACNNNNNNTTYG	6 cut(s)	69, 101, 247, 279, 2490, 2522
Asp700I	GAANNNNTTC	6 cut(s)	802, 1344, 1550, 1649, 2641, 2661
Asp718I	GGTACC	1 cut(s)	2177
AspLEI	GCGC	3 cut(s)	352, 588, 741
AsuC2I	CCSGG	3 cut(s)	205, 2451, 2772
AsuHPI	GGTGA	8 cut(s)	287, 968, 1168, 1371, 2063, 2599, 2749, 2784
AsuNHI	GCTAGC	1 cut(s)	1214
AvaI	CYCGRG	2 cut(s)	1411, 2747
AvaII	GGWCC	6 cut(s)	255, 917, 1430, 1658, 1691, 2851
BalI	TGGCCA	1 cut(s)	630
BamHI	GGATCC	3 cut(s)	235, 2039, 2461
BanI	GGYRCC	1 cut(s)	2177
BanII	GRGCYC	3 cut(s)	504, 2538, 2748
Bbv12I	GWGCWC	4 cut(s)	504, 678, 2538, 2748
BbvI	GCAGC	3 cut(s)	300, 1763, 2538
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	3 cut(s)	1933, 2219, 2459
BciVI	GTATCC	4 cut(s)	287, 864, 2117, 2658
BcnI	CCSGG	3 cut(s)	205, 2451, 2772
BcoDI	GTCTC	6 cut(s)	32, 70, 830, 1711, 1849, 2116
BcuI	ACTAGT	1 cut(s)	1463
BfaI	CTAG	7 cut(s)	128, 890, 1104, 1215, 1464, 1925, 2384
BfmI	CTRYAG	5 cut(s)	835, 2013, 2045, 2430, 2509
BfoI	RGCGCY	1 cut(s)	353
BfrI	CTTAAG	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	1310
BfuI	GTATCC	4 cut(s)	287, 864, 2117, 2658
BglII	AGATCT	1 cut(s)	892
BisI	GCNGC	4 cut(s)	314, 589, 1752, 2552
BlsI	GCNGC	4 cut(s)	315, 590, 1753, 2553
Bme1390I	CCNGG	6 cut(s)	205, 1933, 2219, 2451, 2459, 2772
Bme18I	GGWCC	6 cut(s)	255, 917, 1430, 1658, 1691, 2851
BmeT110I	CYCGRG	2 cut(s)	1411, 2747
BmrFI	CCNGG	6 cut(s)	205, 1933, 2219, 2451, 2459, 2772
BmrI	ACTGGG	1 cut(s)	2856
BmsI	GCATC	6 cut(s)	157, 1385, 1527, 1626, 1811, 2139
BmtI	GCTAGC	1 cut(s)	1218
BmuI	ACTGGG	1 cut(s)	2856
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	2 cut(s)	1149, 2552
Bpu10I	CCTNAGC	2 cut(s)	354, 2355
BpuEI	CTTGAG	1 cut(s)	1201
BpuMI	CCSGG	3 cut(s)	205, 2451, 2772
BsaAI	YACGTR	3 cut(s)	2186, 2240, 2425
BsaJI	CCNNGG	3 cut(s)	2208, 2515, 2921
BsaWI	WCCGGW	3 cut(s)	257, 272, 1122
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	6 cut(s)	133, 359, 932, 1512, 1562, 2284
Bse118I	RCCGGY	1 cut(s)	2715
Bse1I	ACTGG	7 cut(s)	1489, 2195, 2416, 2481, 2548, 2851, 2895
Bse3DI	GCAATG	1 cut(s)	1770
BseAI	TCCGGA	1 cut(s)	1122
BseBI	CCWGG	3 cut(s)	1933, 2219, 2459
BseDI	CCNNGG	3 cut(s)	2208, 2515, 2921
BseGI	GGATG	4 cut(s)	172, 1333, 1542, 2737
BseLI	CCNNNNNNNGG	6 cut(s)	133, 359, 932, 1512, 1562, 2284
BseMI	GCAATG	1 cut(s)	1770
BseNI	ACTGG	7 cut(s)	1489, 2195, 2416, 2481, 2548, 2851, 2895
BseRI	GAGGAG	2 cut(s)	1980, 2857
BseXI	GCAGC	3 cut(s)	300, 1763, 2538
BseYI	CCCAGC	1 cut(s)	1687
BsgI	GTGCAG	1 cut(s)	2049
Bsh1236I	CGCG	2 cut(s)	588, 2583
BshFI	GGCC	8 cut(s)	65, 630, 1525, 1769, 2363, 2415, 2684, 2719
BshNI	GGYRCC	1 cut(s)	2177
BsiHKAI	GWGCWC	4 cut(s)	504, 678, 2538, 2748
BsiHKCI	CYCGRG	2 cut(s)	1411, 2747
BsiSI	CCGG	8 cut(s)	204, 258, 273, 868, 1123, 2450, 2716, 2771
BslFI	GGGAC	8 cut(s)	239, 298, 427, 930, 1049, 1704, 2422, 2864
BslI	CCNNNNNNNGG	6 cut(s)	133, 359, 932, 1512, 1562, 2284
BsmAI	GTCTC	6 cut(s)	32, 70, 830, 1711, 1849, 2116
BsmFI	GGGAC	8 cut(s)	239, 298, 427, 930, 1049, 1704, 2422, 2864
BsmI	GAATGC	1 cut(s)	1216
BsnI	GGCC	8 cut(s)	65, 630, 1525, 1769, 2363, 2415, 2684, 2719
BsoBI	CYCGRG	2 cut(s)	1411, 2747
Bsp1286I	GDGCHC	4 cut(s)	504, 678, 2538, 2748
Bsp13I	TCCGGA	1 cut(s)	1122
Bsp143I	GATC	9 cut(s)	235, 859, 892, 986, 1117, 1263, 2039, 2461, 2887
Bsp68I	TCGCGA	1 cut(s)	2583
BspACI	CCGC	3 cut(s)	134, 588, 914
BspANI	GGCC	8 cut(s)	65, 630, 1525, 1769, 2363, 2415, 2684, 2719
BspEI	TCCGGA	1 cut(s)	1122
BspFNI	CGCG	2 cut(s)	588, 2583
BspMAI	CTGCAG	1 cut(s)	839
BspMI	ACCTGC	1 cut(s)	1310
BspOI	GCTAGC	1 cut(s)	1218
BspPI	GGATC	8 cut(s)	230, 243, 994, 1271, 2034, 2047, 2456, 2469
BspT107I	GGYRCC	1 cut(s)	2177
BspTI	CTTAAG	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	1770
BsrFI	RCCGGY	1 cut(s)	2715
BsrI	ACTGG	7 cut(s)	1489, 2195, 2416, 2481, 2548, 2851, 2895
BssAI	RCCGGY	1 cut(s)	2715
BssECI	CCNNGG	3 cut(s)	2208, 2515, 2921
BssMI	GATC	9 cut(s)	235, 859, 892, 986, 1117, 1263, 2039, 2461, 2887
BssT1I	CCWWGG	2 cut(s)	2208, 2515
Bst2UI	CCWGG	3 cut(s)	1933, 2219, 2459
Bst4CI	ACNGT	4 cut(s)	1058, 1801, 2129, 2434
Bst6I	CTCTTC	1 cut(s)	1446
BstAFI	CTTAAG	1 cut(s)	406
BstBAI	YACGTR	3 cut(s)	2186, 2240, 2425
BstC8I	GCNNGC	1 cut(s)	1216
BstF5I	GGATG	4 cut(s)	172, 1333, 1542, 2737
BstFNI	CGCG	2 cut(s)	588, 2583
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	3 cut(s)	352, 588, 741
BstKTI	GATC	9 cut(s)	238, 862, 895, 989, 1120, 1266, 2042, 2464, 2890
BstMAI	GTCTC	6 cut(s)	32, 70, 830, 1711, 1849, 2116
BstMBI	GATC	9 cut(s)	235, 859, 892, 986, 1117, 1263, 2039, 2461, 2887
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 319, 499, 2360, 2725
BstNI	CCWGG	3 cut(s)	1933, 2219, 2459
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	6 cut(s)	203, 1931, 2217, 2449, 2457, 2770
BstSFI	CTRYAG	5 cut(s)	835, 2013, 2045, 2430, 2509
BstSNI	TACGTA	2 cut(s)	2240, 2425
BstUI	CGCG	2 cut(s)	588, 2583
BstV1I	GCAGC	3 cut(s)	300, 1763, 2538
BstX2I	RGATCY	6 cut(s)	235, 892, 986, 1263, 2039, 2461
BstYI	RGATCY	6 cut(s)	235, 892, 986, 1263, 2039, 2461
BsuI	GTATCC	4 cut(s)	287, 864, 2117, 2658
BsuRI	GGCC	8 cut(s)	65, 630, 1525, 1769, 2363, 2415, 2684, 2719
BtgZI	GCGATG	1 cut(s)	2517
BtsCI	GGATG	4 cut(s)	172, 1333, 1542, 2737
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	4 cut(s)	186, 631, 2811, 2902
BtuMI	TCGCGA	1 cut(s)	2583
BveI	ACCTGC	1 cut(s)	1310
Cac8I	GCNNGC	1 cut(s)	1216
CaiI	CAGNNNCTG	2 cut(s)	834, 2152
CfoI	GCGC	3 cut(s)	352, 588, 741
Cfr10I	RCCGGY	1 cut(s)	2715
Csp6I	GTAC	2 cut(s)	1095, 2178
CviQI	GTAC	2 cut(s)	1095, 2178
DpnI	GATC	9 cut(s)	237, 861, 894, 988, 1119, 1265, 2041, 2463, 2889
DpnII	GATC	9 cut(s)	235, 859, 892, 986, 1117, 1263, 2039, 2461, 2887
EaeI	YGGCCR	4 cut(s)	63, 628, 2361, 2717
Eam1104I	CTCTTC	1 cut(s)	1446
EarI	CTCTTC	1 cut(s)	1446
Ecl136II	GAGCTC	3 cut(s)	502, 2536, 2746
Eco105I	TACGTA	2 cut(s)	2240, 2425
Eco130I	CCWWGG	2 cut(s)	2208, 2515
Eco24I	GRGCYC	3 cut(s)	504, 2538, 2748
Eco32I	GATATC	1 cut(s)	704
Eco47I	GGWCC	6 cut(s)	255, 917, 1430, 1658, 1691, 2851
Eco53kI	GAGCTC	3 cut(s)	502, 2536, 2746
Eco57I	CTGAAG	7 cut(s)	180, 607, 1007, 1017, 1269, 1717, 2209
Eco88I	CYCGRG	2 cut(s)	1411, 2747
EcoICRI	GAGCTC	3 cut(s)	502, 2536, 2746
EcoO109I	RGGNCCY	3 cut(s)	1523, 1691, 2851
EcoRI	GAATTC	3 cut(s)	2060, 2162, 2265
EcoRII	CCWGG	3 cut(s)	1931, 2217, 2457
EcoRV	GATATC	1 cut(s)	704
EcoT14I	CCWWGG	2 cut(s)	2208, 2515
EcoT22I	ATGCAT	1 cut(s)	172
EcoT38I	GRGCYC	3 cut(s)	504, 2538, 2748
ErhI	CCWWGG	2 cut(s)	2208, 2515
FalI	AAGNNNNNCTT	4 cut(s)	1715, 1747, 2253, 2285
FaqI	GGGAC	8 cut(s)	239, 298, 427, 930, 1049, 1704, 2422, 2864
FauI	CCCGC	1 cut(s)	907
FauNDI	CATATG	2 cut(s)	606, 1663
Fnu4HI	GCNGC	4 cut(s)	314, 589, 1752, 2552
FokI	GGATG	4 cut(s)	179, 1340, 1549, 2744
FriOI	GRGCYC	3 cut(s)	504, 2538, 2748
Fsp4HI	GCNGC	4 cut(s)	314, 589, 1752, 2552
FspBI	CTAG	7 cut(s)	128, 890, 1104, 1215, 1464, 1925, 2384
FspI	TGCGCA	1 cut(s)	740
GlaI	GCGC	3 cut(s)	351, 587, 740
GluI	GCNGC	4 cut(s)	314, 589, 1752, 2552
GsaI	CCCAGC	1 cut(s)	1691
GsuI	CTGGAG	2 cut(s)	1149, 2552
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	8 cut(s)	65, 630, 1525, 1769, 2363, 2415, 2684, 2719
HapII	CCGG	8 cut(s)	204, 258, 273, 868, 1123, 2450, 2716, 2771
HhaI	GCGC	3 cut(s)	352, 588, 741
Hin6I	GCGC	3 cut(s)	350, 586, 739
HinP1I	GCGC	3 cut(s)	350, 586, 739
HincII	GTYRAC	3 cut(s)	538, 580, 2490
HindII	GTYRAC	3 cut(s)	538, 580, 2490
HinfI	GANTC	9 cut(s)	200, 331, 781, 904, 1159, 1274, 1645, 2339, 2373
HpaI	GTTAAC	2 cut(s)	580, 2490
HpaII	CCGG	8 cut(s)	204, 258, 273, 868, 1123, 2450, 2716, 2771
HphI	GGTGA	8 cut(s)	287, 968, 1168, 1371, 2063, 2599, 2749, 2784
Hpy166II	GTNNAC	6 cut(s)	538, 580, 1532, 1815, 1905, 2490
Hpy8I	GTNNAC	6 cut(s)	538, 580, 1532, 1815, 1905, 2490
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	4 cut(s)	1058, 1801, 2129, 2434
HpyCH4IV	ACGT	5 cut(s)	443, 2026, 2185, 2239, 2424
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 319, 499, 2360, 2725
HpySE526I	ACGT	5 cut(s)	443, 2026, 2185, 2239, 2424
HspAI	GCGC	3 cut(s)	350, 586, 739
Kpn2I	TCCGGA	1 cut(s)	1122
KpnI	GGTACC	1 cut(s)	2181
KspAI	GTTAAC	2 cut(s)	580, 2490
Kzo9I	GATC	9 cut(s)	235, 859, 892, 986, 1117, 1263, 2039, 2461, 2887
LmnI	GCTCC	5 cut(s)	848, 2143, 2533, 2743, 2774
Lsp1109I	GCAGC	3 cut(s)	300, 1763, 2538
LweI	GCATC	6 cut(s)	157, 1385, 1527, 1626, 1811, 2139
MaeI	CTAG	7 cut(s)	128, 890, 1104, 1215, 1464, 1925, 2384
MaeII	ACGT	5 cut(s)	443, 2026, 2185, 2239, 2424
MaeIII	GTNAC	3 cut(s)	145, 1174, 2186
MalI	GATC	9 cut(s)	237, 861, 894, 988, 1119, 1265, 2041, 2463, 2889
MboI	GATC	9 cut(s)	235, 859, 892, 986, 1117, 1263, 2039, 2461, 2887
MfeI	CAATTG	1 cut(s)	957
MflI	RGATCY	6 cut(s)	235, 892, 986, 1263, 2039, 2461
MhlI	GDGCHC	4 cut(s)	504, 678, 2538, 2748
MlsI	TGGCCA	1 cut(s)	630
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	2 cut(s)	2333, 2367
MmeI	TCCRAC	2 cut(s)	747, 2367
Mox20I	TGGCCA	1 cut(s)	630
Mph1103I	ATGCAT	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	1122
MroXI	GAANNNNTTC	6 cut(s)	802, 1344, 1550, 1649, 2641, 2661
MscI	TGGCCA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	2656
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	1754, 2012
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	8 cut(s)	204, 258, 273, 868, 1123, 2450, 2716, 2771
MspR9I	CCNGG	6 cut(s)	205, 1933, 2219, 2451, 2459, 2772
MunI	CAATTG	1 cut(s)	957
Mva1269I	GAATGC	1 cut(s)	1216
MvaI	CCWGG	3 cut(s)	1933, 2219, 2459
MvnI	CGCG	2 cut(s)	588, 2583
MwoI	GCNNNNNNNGC	5 cut(s)	176, 319, 499, 2360, 2725
NciI	CCSGG	3 cut(s)	205, 2451, 2772
NdeI	CATATG	2 cut(s)	606, 1663
NdeII	GATC	9 cut(s)	235, 859, 892, 986, 1117, 1263, 2039, 2461, 2887
NheI	GCTAGC	1 cut(s)	1214
NmuCI	GTSAC	2 cut(s)	1174, 2186
NruI	TCGCGA	1 cut(s)	2583
NsbI	TGCGCA	1 cut(s)	740
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	1 cut(s)	305
PaeR7I	CTCGAG	1 cut(s)	2747
PctI	GAATGC	1 cut(s)	1216
PdmI	GAANNNNTTC	6 cut(s)	802, 1344, 1550, 1649, 2641, 2661
PfeI	GAWTC	7 cut(s)	200, 331, 781, 904, 1159, 1274, 1645
PflMI	CCANNNNNTGG	1 cut(s)	932
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	315, 590, 1753, 2553
PleI	GAGTC	2 cut(s)	2333, 2367
PpsI	GAGTC	2 cut(s)	2333, 2367
Ppu21I	YACGTR	3 cut(s)	2186, 2240, 2425
PpuMI	RGGWCCY	2 cut(s)	1691, 2851
PsiI	TTATAA	3 cut(s)	39, 1760, 1986
Psp124BI	GAGCTC	3 cut(s)	504, 2538, 2748
Psp5II	RGGWCCY	2 cut(s)	1691, 2851
Psp6I	CCWGG	3 cut(s)	1931, 2217, 2457
PspFI	CCCAGC	1 cut(s)	1687
PspGI	CCWGG	3 cut(s)	1931, 2217, 2457
PspPPI	RGGWCCY	2 cut(s)	1691, 2851
PstI	CTGCAG	1 cut(s)	839
PstNI	CAGNNNCTG	2 cut(s)	834, 2152
PsuI	RGATCY	6 cut(s)	235, 892, 986, 1263, 2039, 2461
PvuII	CAGCTG	2 cut(s)	1754, 2012
RruI	TCGCGA	1 cut(s)	2583
RsaI	GTAC	2 cut(s)	1096, 2179
RsaNI	GTAC	2 cut(s)	1095, 2178
RseI	CAYNNNNRTG	1 cut(s)	2656
SacI	GAGCTC	3 cut(s)	504, 2538, 2748
SatI	GCNGC	4 cut(s)	314, 589, 1752, 2552
Sau3AI	GATC	9 cut(s)	235, 859, 892, 986, 1117, 1263, 2039, 2461, 2887
SchI	GAGTC	2 cut(s)	2333, 2367
ScrFI	CCNGG	6 cut(s)	205, 1933, 2219, 2451, 2459, 2772
SduI	GDGCHC	4 cut(s)	504, 678, 2538, 2748
SfaNI	GCATC	6 cut(s)	157, 1385, 1527, 1626, 1811, 2139
SfcI	CTRYAG	5 cut(s)	835, 2013, 2045, 2430, 2509
Sfr274I	CTCGAG	1 cut(s)	2747
SinI	GGWCC	6 cut(s)	255, 917, 1430, 1658, 1691, 2851
SlaI	CTCGAG	1 cut(s)	2747
SmiMI	CAYNNNNRTG	1 cut(s)	2656
SmlI	CTYRAG	3 cut(s)	406, 1180, 2747
SmoI	CTYRAG	3 cut(s)	406, 1180, 2747
SnaBI	TACGTA	2 cut(s)	2240, 2425
SpeI	ACTAGT	1 cut(s)	1463
SsiI	CCGC	3 cut(s)	134, 588, 914
SspMI	CTAG	7 cut(s)	128, 890, 1104, 1215, 1464, 1925, 2384
SstI	GAGCTC	3 cut(s)	504, 2538, 2748
StyD4I	CCNGG	6 cut(s)	203, 1931, 2217, 2449, 2457, 2770
StyI	CCWWGG	2 cut(s)	2208, 2515
TaaI	ACNGT	4 cut(s)	1058, 1801, 2129, 2434
TaiI	ACGT	5 cut(s)	446, 2029, 2188, 2242, 2427
TaqI	TCGA	5 cut(s)	753, 1674, 2101, 2748, 2837
TaqII	GACCGA	2 cut(s)	934, 2084
TatI	WGTACW	1 cut(s)	1094
TauI	GCSGC	1 cut(s)	591
TfiI	GAWTC	7 cut(s)	200, 331, 781, 904, 1159, 1274, 1645
TscAI	CASTG	4 cut(s)	186, 631, 2818, 2902
TseFI	GTSAC	2 cut(s)	1174, 2186
TseI	GCWGC	3 cut(s)	313, 1751, 2551
Tsp45I	GTSAC	2 cut(s)	1174, 2186
TspGWI	ACGGA	2 cut(s)	999, 1549
TspRI	CASTG	4 cut(s)	186, 631, 2818, 2902
Van91I	CCANNNNNTGG	1 cut(s)	932
Vha464I	CTTAAG	1 cut(s)	406
VpaK11BI	GGWCC	6 cut(s)	255, 917, 1430, 1658, 1691, 2851
XapI	RAATTY	8 cut(s)	633, 716, 1282, 1340, 1634, 2060, 2162, 2265
XbaI	TCTAGA	1 cut(s)	889
XceI	RCATGY	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2215
XhoI	CTCGAG	1 cut(s)	2747
XmnI	GAANNNNTTC	6 cut(s)	802, 1344, 1550, 1649, 2641, 2661
XspI	CTAG	7 cut(s)	128, 890, 1104, 1215, 1464, 1925, 2384
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.