MD07G1226100.v1.1

Eukaryotic translation initiation factor 2

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
30205079 .. 30208165
3087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1226100.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGGCTTCCCAGACACCGAACCTGGAGTGCCGGATGTACGAAGCGCGGTACCCGGATGTTGACATGGCGGTGATGATCCAGGTGAAGAACATCGCCGACATGGGCGCCTACGTCTCTCTCCTCGAGTACAACAACATCGAGGGCATGATTCTCTTCTCCGAGCTCTCCCGCCGCCGGATTCGGAGTGTCAGCAGCCTCATCAAGGTCGGACGCATCGAGCCCGTCATGGTCCTCAGGGTCGACAAGGAGAAGGGCTACATCGATTTGAGCAAGCGGAGGGTTTCTGAGGAGGATATTCAGGCATGCGAGGAGAGGTACAACAAGAGCAAGCTCGTCCACTCCATCATGCGCCACGTCGCCGAGACTTTGGGGATTGATTTGGAGGACTTGTATGTCAATATTGGCTGGCCGTTATACCGGAAGTATGGTCATGCTTTCGAGGCTTTCAAAATAGTTGTGACTGATCCTGATTCAGTTCTTAGCACCCTCACATGTGAGGTCAAAGAGGCTGGCCCTGATGGACAGGAGGTCACTAAGGTGGTTCCTGCTGTGTCAGAGGAAGTTAAAGAATCTCTGGTGAAGAATATTAGGAGAAGAATGACCCCGCAACCGTTGAAGATCCGAGCTGATATCGAAATGAAGTGCTTCCAATTTGATGGTGTCCTTCACATTAAGGATGCCATGAGGAAAGCAGAAGCTGCGGGTAATAATGACTGTCCTGTGAAAATTAAACTGGTTGCTCCTCCGCTTTATGTTCTTACCACACAGACTCTTGATAAGGAGCAAGGAATATCAGTTCTAAGCAATGCAATTGTAGCGTGCACACAAGAAATTGAACATCACAAGGGGAAACTAGCAGTGAAGGAAGCACCCAGAGTGGTGAGCGAGCGGGATGATAAACTACTTGCCGAGCACATGATTAAGCTTCGCCAGGAGAATGAGGAGGTTAGTGGTGATGAGGGTAGCGAGGAGGAAGAAGACACCGGAATGGGAGAAGTTAACGTTGACGCAGGTCCCGGCATAGTAGATTGA

Protein Analysis

344

Amino Acids

38.56

Weight (kDa)

5.21

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 24 - 92 1.3e-12 S1 RNA binding domain
EIF_2_alpha PF07541 130 - 260 7.4e-35 Eukaryotic translation initiation factor 2 alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 1001
Acc65I GGTACC 1 cut(s) 48
AccB1I GGYRCC 2 cut(s) 48, 104
AccBSI CCGCTC 1 cut(s) 889
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 46
AciI CCGC 9 cut(s) 46, 68, 169, 172, 274, 605, 701, 746, 889
AclI AACGTT 1 cut(s) 1002
AclWI GGATC 3 cut(s) 70, 458, 613
AcoI YGGCCR 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 4 cut(s) 38, 50, 128, 317
AfiI CCNNNNNNNGG 2 cut(s) 174, 202
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 3 cut(s) 448, 616, 836
AhdI GACNNNNNGTC 1 cut(s) 527
AjiI CACGTC 1 cut(s) 355
AjnI CCWGG 3 cut(s) 21, 78, 930
AleI CACNNNNGTG 1 cut(s) 536
AloI GAACNNNNNNTCC 2 cut(s) 780, 812
AluBI AGCT 5 cut(s) 163, 331, 626, 698, 925
AluI AGCT 5 cut(s) 163, 331, 626, 698, 925
Alw21I GWGCWC 3 cut(s) 165, 824, 915
Alw26I GTCTC 2 cut(s) 118, 356
Alw44I GTGCAC 1 cut(s) 820
AlwI GGATC 3 cut(s) 70, 458, 613
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 407, 511
ApaLI GTGCAC 1 cut(s) 820
ApeKI GCWGC 2 cut(s) 192, 698
Asp700I GAANNNNTTC 1 cut(s) 644
Asp718I GGTACC 1 cut(s) 48
AspLEI GCGC 3 cut(s) 46, 107, 351
AspS9I GGNCC 3 cut(s) 229, 512, 1013
AsuC2I CCSGG 2 cut(s) 53, 1017
AsuHPI GGTGA 5 cut(s) 82, 94, 589, 892, 965
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 229, 1013
AxyI CCTNAGG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 824
BanI GGYRCC 2 cut(s) 48, 104
BanII GRGCYC 2 cut(s) 165, 222
BbsI GAAGAC 1 cut(s) 984
Bbv12I GWGCWC 3 cut(s) 165, 824, 915
BbvI GCAGC 2 cut(s) 204, 685
BccI CCATC 3 cut(s) 350, 512, 650
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 3 cut(s) 23, 80, 932
BcnI CCSGG 2 cut(s) 53, 1017
BcoDI GTCTC 2 cut(s) 118, 356
BfaI CTAG 1 cut(s) 854
BfoI RGCGCY 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 1001
BisI GCNGC 3 cut(s) 172, 193, 699
BlsI GCNGC 3 cut(s) 173, 194, 700
Bme1390I CCNGG 5 cut(s) 23, 53, 80, 932, 1017
Bme18I GGWCC 2 cut(s) 229, 1013
BmeRI GACNNNNNGTC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 3 cut(s) 229, 512, 1013
BmiI GGNNCC 4 cut(s) 50, 106, 543, 1015
BmrFI CCNGG 5 cut(s) 23, 53, 80, 932, 1017
BmsI GCATC 2 cut(s) 222, 667
BoxI GACNNNNGTC 1 cut(s) 1011
BpiI GAAGAC 1 cut(s) 984
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 53, 1017
Bsa29I ATCGAT 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 105
BsaWI WCCGGW 2 cut(s) 417, 983
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 202
Bse1I ACTGG 1 cut(s) 738
Bse21I CCTNAGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 811
BseBI CCWGG 3 cut(s) 23, 80, 932
BseCI ATCGAT 1 cut(s) 261
BseGI GGATG 4 cut(s) 39, 61, 682, 898
BseLI CCNNNNNNNGG 2 cut(s) 174, 202
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 2 cut(s) 247, 276
BseNI ACTGG 1 cut(s) 738
BseRI GAGGAG 6 cut(s) 110, 302, 323, 732, 956, 983
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 2 cut(s) 204, 685
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 2 cut(s) 409, 513
BshNI GGYRCC 2 cut(s) 48, 104
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 3 cut(s) 165, 824, 915
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 6 cut(s) 31, 53, 175, 418, 984, 1017
BslFI GGGAC 1 cut(s) 999
BslI CCNNNNNNNGG 2 cut(s) 174, 202
BsmAI GTCTC 2 cut(s) 118, 356
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 999
BsnI GGCC 2 cut(s) 409, 513
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 4 cut(s) 165, 222, 824, 915
Bsp143I GATC 3 cut(s) 75, 463, 618
BspACI CCGC 9 cut(s) 46, 68, 169, 172, 274, 605, 701, 746, 889
BspANI GGCC 2 cut(s) 409, 513
BspCNI CTCAG 2 cut(s) 246, 277
BspDI ATCGAT 1 cut(s) 261
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 4 cut(s) 50, 106, 543, 1015
BspMI ACCTGC 1 cut(s) 1001
BspPI GGATC 3 cut(s) 70, 458, 613
BspT107I GGYRCC 2 cut(s) 48, 104
BsrBI CCGCTC 1 cut(s) 889
BsrDI GCAATG 1 cut(s) 811
BsrI ACTGG 1 cut(s) 738
BssMI GATC 3 cut(s) 75, 463, 618
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 23, 80, 932
Bst4CI ACNGT 2 cut(s) 612, 716
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 7 cut(s) 272, 304, 329, 407, 511, 820, 887
BstDEI CTNAG 5 cut(s) 233, 285, 479, 534, 800
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 4 cut(s) 39, 61, 682, 898
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 3 cut(s) 46, 107, 351
BstKTI GATC 3 cut(s) 78, 466, 621
BstMAI GTCTC 2 cut(s) 118, 356
BstMBI GATC 3 cut(s) 75, 463, 618
BstMWI GCNNNNNNNGC 3 cut(s) 440, 698, 815
BstNI CCWGG 3 cut(s) 23, 80, 932
BstNSI RCATGY 2 cut(s) 306, 495
BstPAI GACNNNNGTC 1 cut(s) 1011
BstSCI CCNGG 5 cut(s) 21, 51, 78, 930, 1015
BstSLI GKGCMC 1 cut(s) 824
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 204, 685
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 1 cut(s) 618
Bsu15I ATCGAT 1 cut(s) 261
Bsu36I CCTNAGG 1 cut(s) 233
BsuRI GGCC 2 cut(s) 409, 513
BsuTUI ATCGAT 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 76
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 4 cut(s) 39, 61, 682, 898
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 1 cut(s) 864
BveI ACCTGC 1 cut(s) 1001
Cac8I GCNNGC 7 cut(s) 272, 304, 329, 407, 511, 820, 887
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 3 cut(s) 46, 107, 351
Cfr13I GGNCC 3 cut(s) 229, 512, 1013
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 2 cut(s) 219, 1016
Csp6I GTAC 4 cut(s) 37, 49, 127, 316
CviQI GTAC 4 cut(s) 37, 49, 127, 316
DdeI CTNAG 5 cut(s) 233, 285, 479, 534, 800
DinI GGCGCC 1 cut(s) 106
DpnI GATC 3 cut(s) 77, 465, 620
DpnII GATC 3 cut(s) 75, 463, 618
DrdI GACNNNNNNGTC 1 cut(s) 392
DriI GACNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 2 cut(s) 165, 222
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 2 cut(s) 229, 1013
Eco53kI GAGCTC 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 1013
EcoRII CCWGG 3 cut(s) 21, 78, 930
EcoRV GATATC 1 cut(s) 631
EcoT38I GRGCYC 2 cut(s) 165, 222
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 118
FaqI GGGAC 1 cut(s) 999
FauI CCCGC 4 cut(s) 176, 612, 694, 882
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 172, 193, 699
FokI GGATG 4 cut(s) 46, 68, 689, 905
FriOI GRGCYC 2 cut(s) 165, 222
Fsp4HI GCNGC 3 cut(s) 172, 193, 699
FspBI CTAG 1 cut(s) 854
GlaI GCGC 3 cut(s) 45, 106, 350
GluI GCNGC 3 cut(s) 172, 193, 699
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 2 cut(s) 409, 513
HapII CCGG 6 cut(s) 31, 53, 175, 418, 984, 1017
HgaI GACGC 2 cut(s) 219, 1016
HhaI GCGC 3 cut(s) 46, 107, 351
Hin1I GRCGYC 1 cut(s) 105
Hin6I GCGC 3 cut(s) 44, 105, 349
HinP1I GCGC 3 cut(s) 44, 105, 349
HincII GTYRAC 4 cut(s) 61, 241, 1000, 1006
HindII GTYRAC 4 cut(s) 61, 241, 1000, 1006
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 5 cut(s) 148, 178, 470, 569, 769
HpaI GTTAAC 1 cut(s) 1000
HpaII CCGG 6 cut(s) 31, 53, 175, 418, 984, 1017
HphI GGTGA 5 cut(s) 82, 94, 589, 892, 965
Hpy166II GTNNAC 6 cut(s) 61, 241, 337, 822, 1000, 1006
Hpy188I TCNGA 6 cut(s) 160, 183, 209, 286, 556, 623
Hpy188III TCNNGA 2 cut(s) 467, 773
Hpy8I GTNNAC 6 cut(s) 61, 241, 337, 822, 1000, 1006
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 244, 674, 856
HpyCH4III ACNGT 2 cut(s) 612, 716
HpyCH4IV ACGT 3 cut(s) 111, 354, 1002
HpyCH4V TGCA 2 cut(s) 809, 822
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 698, 815
HpyF3I CTNAG 5 cut(s) 233, 285, 479, 534, 800
HpySE526I ACGT 3 cut(s) 111, 354, 1002
Hsp92I GRCGYC 1 cut(s) 105
HspAI GCGC 3 cut(s) 44, 105, 349
KasI GGCGCC 1 cut(s) 104
KpnI GGTACC 1 cut(s) 52
KspAI GTTAAC 1 cut(s) 1000
Kzo9I GATC 3 cut(s) 75, 463, 618
LmnI GCTCC 2 cut(s) 745, 781
Lsp1109I GCAGC 2 cut(s) 204, 685
LweI GCATC 2 cut(s) 222, 667
MaeI CTAG 1 cut(s) 854
MaeII ACGT 3 cut(s) 111, 354, 1002
MaeIII GTNAC 2 cut(s) 457, 529
MalI GATC 3 cut(s) 77, 465, 620
MbiI CCGCTC 1 cut(s) 889
MboI GATC 3 cut(s) 75, 463, 618
MboII GAAGA 7 cut(s) 97, 145, 592, 606, 628, 986, 989
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 4 cut(s) 165, 222, 824, 915
MluCI AATT 4 cut(s) 650, 726, 810, 831
Mly113I GGCGCC 1 cut(s) 105
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 5 cut(s) 564, 672, 729, 921, 999
MslI CAYNNNNRTG 3 cut(s) 68, 536, 986
MspI CCGG 6 cut(s) 31, 53, 175, 418, 984, 1017
MspR9I CCNGG 5 cut(s) 23, 53, 80, 932, 1017
MunI CAATTG 1 cut(s) 810
MvaI CCWGG 3 cut(s) 23, 80, 932
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 3 cut(s) 440, 698, 815
NarI GGCGCC 1 cut(s) 105
NciI CCSGG 2 cut(s) 53, 1017
NdeII GATC 3 cut(s) 75, 463, 618
NlaIV GGNNCC 4 cut(s) 50, 106, 543, 1015
NmeAIII GCCGAG 2 cut(s) 385, 934
NmuCI GTSAC 2 cut(s) 457, 529
NspI RCATGY 2 cut(s) 306, 495
OliI CACNNNNGTG 1 cut(s) 536
PaeI GCATGC 1 cut(s) 306
PaeR7I CTCGAG 1 cut(s) 122
PciI ACATGT 1 cut(s) 491
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 4 cut(s) 148, 178, 470, 569
PkrI GCNGC 3 cut(s) 173, 194, 700
PleI GAGTC 1 cut(s) 763
PluTI GGCGCC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 763
PpuMI RGGWCCY 1 cut(s) 1013
PscI ACATGT 1 cut(s) 491
PshAI GACNNNNGTC 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 165
Psp1406I AACGTT 1 cut(s) 1002
Psp5II RGGWCCY 1 cut(s) 1013
Psp6I CCWGG 3 cut(s) 21, 78, 930
PspGI CCWGG 3 cut(s) 21, 78, 930
PspN4I GGNNCC 4 cut(s) 50, 106, 543, 1015
PspPI GGNCC 3 cut(s) 229, 512, 1013
PspPPI RGGWCCY 1 cut(s) 1013
PspXI VCTCGAGB 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 618
RsaI GTAC 4 cut(s) 38, 50, 128, 317
RsaNI GTAC 4 cut(s) 37, 49, 127, 316
RseI CAYNNNNRTG 3 cut(s) 68, 536, 986
SacI GAGCTC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 5 cut(s) 564, 672, 729, 921, 999
SatI GCNGC 3 cut(s) 172, 193, 699
Sau3AI GATC 3 cut(s) 75, 463, 618
Sau96I GGNCC 3 cut(s) 229, 512, 1013
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 5 cut(s) 23, 53, 80, 932, 1017
SduI GDGCHC 4 cut(s) 165, 222, 824, 915
SfaNI GCATC 2 cut(s) 222, 667
SfoI GGCGCC 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 122
SinI GGWCC 2 cut(s) 229, 1013
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 3 cut(s) 68, 536, 986
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SphI GCATGC 1 cut(s) 306
Sse9I AATT 4 cut(s) 650, 726, 810, 831
SsiI CCGC 9 cut(s) 46, 68, 169, 172, 274, 605, 701, 746, 889
SspDI GGCGCC 1 cut(s) 104
SspI AATATT 2 cut(s) 400, 586
SspMI CTAG 1 cut(s) 854
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 5 cut(s) 21, 51, 78, 930, 1015
TaaI ACNGT 2 cut(s) 612, 716
TaiI ACGT 3 cut(s) 114, 357, 1005
TaqI TCGA 7 cut(s) 123, 138, 216, 240, 261, 438, 633
TasI AATT 4 cut(s) 650, 726, 810, 831
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 4 cut(s) 148, 178, 470, 569
Tru1I TTAA 5 cut(s) 564, 672, 729, 921, 999
Tru9I TTAA 5 cut(s) 564, 672, 729, 921, 999
TscAI CASTG 1 cut(s) 864
TseFI GTSAC 2 cut(s) 457, 529
TseI GCWGC 2 cut(s) 192, 698
Tsp45I GTSAC 2 cut(s) 457, 529
TspDTI ATGAA 1 cut(s) 653
TspRI CASTG 1 cut(s) 864
VneI GTGCAC 1 cut(s) 820
VpaK11BI GGWCC 2 cut(s) 229, 1013
XagI CCTNNNNNAGG 1 cut(s) 200
XceI RCATGY 2 cut(s) 306, 495
XhoI CTCGAG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.