AT5G05510

Mitotic spindle checkpoint protein BUBR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010450
Physical Location & Seq
Reverse (-)
1630559 .. 1632739
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05510.1

Sequence Viewer

Length: 1416 bp
ATGGCGAAGAACGAGAACGGCTACGAGAATTTGCTGGCTTCATTGATCGTCGACATCAAATCATACTCTGGAAAAGACCATCTTCTTCCGTGGATCCGAGGTGTTAAGAAGATGAAAGAGAGTTTGCCGTCTCAGATATTGAACGAGAAGCTGCCGCGGTTTTTGCAGAAATGTGCAGAGTCATTTGAATCTGATAAGAGATATAAGAACGATTCGCGGTATATTCGTGTTTGGTTGCAGCTGATGGACTTTGTAGACGATCCAAGAGCTCTTTTAAGAACCATGGAAGCAAAAAGTATAGGGACCAAGAGGTCACTCTTCTACCAGGCATATGCTCTCCATTATGAGAAGATGAAGAGATTTGAGGATGCTGAGAAAATGTACCGTCTTGGGGTTCAAAACCTTGCAGAACCCATGGATGAGTTACAGAAATCATACTTGCAGTTCGTTACTCGCATGGAGAGGCACAAAAAGAAGAAGACACAGCGTCAAGAACAAAAACTGTCTGGAAAGCACCACAAGGTTGATGAGAGGCAACAACATGAGCCTGTGTTGAATTTTGTTGATAAAGCCATTGTAGGGAAGCCTGAAGCAGAAAATGCTTGCCATCACGGTTTGGTGGATCCCACAATAAACATGAAGGAAGCCATGAATACAATCAACAACATGTTCAAAGAGCCTATAGAAACTGCTCCACTTCAGAGAAGATCACGACAGAGAAGTCAGAACAAAGAAAATCAAGGATGCAACAATAGCTTTGAGGTTTTTCTGGACGAGAATCTCGAATGTGAAACAGGGACAAGTGGAAAAGCAAAGACTAGTACTACTCAGTGTGGATCCCAGCCTAATCAAGAGTCCTTTGAGATATTCATTGATGATGAAAACACTGATGAAACTGCGGATGAAAATGATGAGGCTGGAAAAGCTTTTGTCTTTCTCCTGCCAAGAGACCATTCACCTGAAAGCTCTGAAGAAGCAGACAGAAACACTCCTCCTCGGGCTAGATTTAGAGAAGATACAGTTGTTCGTAGATTTGTTGGTTCAACAATCTCCGATGAGCCTGAAGCAGTTGAAAACGCCTGCCACCATGGCCTTGTTGACCCTACAGTAAACCTAAAGGAAGCTATGGAGGACATAAACAACATGTTTGGCGAACCAATCAATTTTGTTAGACCCAACCGCTCTAAAAACAAAGGAAAAGCAGTAGTAGAGACAAAACCAAATCCTGCTGCAGGTTTCTCAATACTCGAGGATGATGATGAAGAAGAAGCTGAGCAAGAACATCAAGGGAAGAGCCAGCCGACTCAGAGATTGCCTTCAAAATCAGATGAGCGCGAACTATTTGAACCAACGGTATGCACAAAAGTAGCCTTGGATGAAATCAACAAATTGTTTGCAATGCCAATGGACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mad3_BUB1_I

Protein Analysis

471

Amino Acids

54.23

Weight (kDa)

5.52

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mad3_BUB1_I PF08311 16 - 132 6.9e-35 Mad3/BUB1 homology region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05510
fragaria_vesca FvH4_7g24900 FvH4_7g24900 FvH4_7g24900 FvH4_7g24900 FvH4_7g24900
malus_domestica MD01G1156700.v1.1 MD07G1225400.v1.1
prunus_persica Prupe.2G254200_v2.0.a1
pyrus_communis pycom01g17350 pycom07g20410
rosa_chinensis RchiOBHm_Chr1g0370781
rosa_laevigata RLG00000027010
rosa_multiflora Rmu_sc0009474.1_g000004
rosa_roxburghii Rroxscaffold_4G00286230
rosa_rugosa Rorug01G0359700
rosa_samantha Rh1AG368800 Rh1BG332400 Rh1CG346300 Rh1DG363800
rosa_wichuraiana Rw1G032470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 310, 720
Acc36I ACCTGC 1 cut(s) 1223
AccBSI CCGCTC 1 cut(s) 1182
AccI GTMKAC 2 cut(s) 51, 255
AccII CGCG 3 cut(s) 157, 217, 1335
AciI CCGC 5 cut(s) 155, 157, 217, 899, 1180
AclWI GGATC 7 cut(s) 88, 101, 254, 617, 630, 831, 844
AcsI RAATTY 2 cut(s) 28, 556
AcuI CTGAAG 4 cut(s) 609, 683, 990, 1083
AfaI GTAC 2 cut(s) 383, 823
AfiI CCNNNNNNNGG 3 cut(s) 391, 579, 1232
AflIII ACRYGT 2 cut(s) 666, 1143
AgsI TTSAA 9 cut(s) 142, 188, 398, 556, 673, 1044, 1073, 1320, 1346
AhdI GACNNNNNGTC 1 cut(s) 486
AhlI ACTAGT 1 cut(s) 818
AjnI CCWGG 1 cut(s) 324
AjuI GAANNNNNNNTTGG 2 cut(s) 937, 969
AluBI AGCT 8 cut(s) 151, 241, 269, 756, 926, 966, 1124, 1271
AluI AGCT 8 cut(s) 151, 241, 269, 756, 926, 966, 1124, 1271
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 135, 942, 1205
AlwI GGATC 7 cut(s) 88, 101, 254, 617, 630, 831, 844
Ama87I CYCGRG 2 cut(s) 996, 1247
AoxI GGCC 1 cut(s) 1090
ApeKI GCWGC 3 cut(s) 151, 238, 1229
ApoI RAATTY 2 cut(s) 28, 556
AspLEI GCGC 1 cut(s) 1335
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 948
AvaI CYCGRG 2 cut(s) 996, 1247
AvaII GGWCC 1 cut(s) 303
BaeI ACNNNNGTAYC 2 cut(s) 1008, 1041
BamHI GGATCC 3 cut(s) 93, 622, 836
BanII GRGCYC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 3 cut(s) 138, 250, 1216
BccI CCATC 3 cut(s) 87, 238, 615
BceAI ACGGC 2 cut(s) 34, 112
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 3 cut(s) 135, 942, 1205
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 2 cut(s) 819, 1002
BfmI CTRYAG 3 cut(s) 681, 1104, 1230
BfuAI ACCTGC 1 cut(s) 1223
BglI GCCNNNNNGGC 1 cut(s) 1089
BisI GCNGC 4 cut(s) 152, 155, 239, 1230
BlpI GCTNAGC 1 cut(s) 1272
BlsI GCNGC 4 cut(s) 153, 156, 240, 1231
BmcAI AGTACT 1 cut(s) 823
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 486
BmeT110I CYCGRG 2 cut(s) 996, 1247
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 4 cut(s) 95, 304, 624, 838
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 2 cut(s) 358, 734
BpiI GAAGAC 1 cut(s) 485
Bpu1102I GCTNAGC 1 cut(s) 1272
BsaI GGTCTC 1 cut(s) 942
BsaJI CCNNGG 8 cut(s) 89, 97, 155, 282, 414, 995, 1087, 1371
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 579, 1232
Bse3DI GCAATG 1 cut(s) 1404
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 8 cut(s) 89, 97, 155, 282, 414, 995, 1087, 1371
BseGI GGATG 6 cut(s) 373, 424, 749, 907, 1258, 1381
BseLI CCNNNNNNNGG 3 cut(s) 391, 579, 1232
BseMI GCAATG 1 cut(s) 1404
BseMII CTCAG 5 cut(s) 146, 363, 842, 1263, 1319
BseRI GAGGAG 2 cut(s) 981, 984
BseXI GCAGC 3 cut(s) 138, 250, 1216
BseYI CCCAGC 1 cut(s) 840
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 3 cut(s) 157, 217, 1335
BshFI GGCC 1 cut(s) 1092
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 2 cut(s) 996, 1247
BslFI GGGAC 2 cut(s) 316, 811
BslI CCNNNNNNNGG 3 cut(s) 391, 579, 1232
BsmAI GTCTC 3 cut(s) 135, 942, 1205
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 316, 811
BsnI GGCC 1 cut(s) 1092
Bso31I GGTCTC 1 cut(s) 942
BsoBI CYCGRG 2 cut(s) 996, 1247
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 6 cut(s) 45, 93, 259, 622, 707, 836
Bsp1720I GCTNAGC 1 cut(s) 1272
Bsp19I CCATGG 3 cut(s) 282, 414, 1087
BspACI CCGC 5 cut(s) 155, 157, 217, 899, 1180
BspANI GGCC 1 cut(s) 1092
BspCNI CTCAG 5 cut(s) 145, 364, 841, 1264, 1318
BspFNI CGCG 3 cut(s) 157, 217, 1335
BspLI GGNNCC 4 cut(s) 95, 304, 624, 838
BspMAI CTGCAG 1 cut(s) 1234
BspMI ACCTGC 1 cut(s) 1223
BspPI GGATC 7 cut(s) 88, 101, 254, 617, 630, 831, 844
BspQI GCTCTTC 1 cut(s) 1286
BspTNI GGTCTC 1 cut(s) 942
BsrBI CCGCTC 1 cut(s) 1182
BsrDI GCAATG 1 cut(s) 1404
BssECI CCNNGG 8 cut(s) 89, 97, 155, 282, 414, 995, 1087, 1371
BssMI GATC 6 cut(s) 45, 93, 259, 622, 707, 836
BssT1I CCWWGG 4 cut(s) 282, 414, 1087, 1371
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 6 cut(s) 386, 504, 614, 1021, 1108, 1354
Bst6I CTCTTC 3 cut(s) 323, 350, 1286
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 4 cut(s) 36, 604, 1081, 1298
BstDEI CTNAG 5 cut(s) 132, 372, 828, 1272, 1305
BstDSI CCRYGG 5 cut(s) 89, 155, 282, 414, 1087
BstENI CCTNNNNNAGG 1 cut(s) 1230
BstF5I GGATG 6 cut(s) 373, 424, 749, 907, 1258, 1381
BstFNI CGCG 3 cut(s) 157, 217, 1335
BstHHI GCGC 1 cut(s) 1335
BstKTI GATC 6 cut(s) 48, 96, 262, 625, 710, 839
BstMAI GTCTC 3 cut(s) 135, 942, 1205
BstMBI GATC 6 cut(s) 45, 93, 259, 622, 707, 836
BstMWI GCNNNNNNNGC 5 cut(s) 163, 599, 753, 923, 1089
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 670, 1147
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 3 cut(s) 681, 1104, 1230
BstUI CGCG 3 cut(s) 157, 217, 1335
BstV1I GCAGC 3 cut(s) 138, 250, 1216
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 3 cut(s) 93, 622, 836
BstYI RGATCY 3 cut(s) 93, 622, 836
BsuRI GGCC 1 cut(s) 1092
BtgI CCRYGG 5 cut(s) 89, 155, 282, 414, 1087
BtsCI GGATG 6 cut(s) 373, 424, 749, 907, 1258, 1381
BtsIMutI CAGTG 2 cut(s) 836, 885
BveI ACCTGC 1 cut(s) 1223
Cac8I GCNNGC 4 cut(s) 36, 604, 1081, 1298
CfoI GCGC 1 cut(s) 1335
Cfr13I GGNCC 1 cut(s) 303
Cfr42I CCGCGG 1 cut(s) 158
CseI GACGC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 382, 822
CviAII CATG 9 cut(s) 283, 415, 457, 542, 637, 649, 667, 1088, 1144
CviQI GTAC 2 cut(s) 382, 822
DdeI CTNAG 5 cut(s) 132, 372, 828, 1272, 1305
DpnI GATC 6 cut(s) 47, 95, 261, 624, 709, 838
DpnII GATC 6 cut(s) 45, 93, 259, 622, 707, 836
DrdI GACNNNNNNGTC 2 cut(s) 310, 720
DriI GACNNNNNGTC 1 cut(s) 486
DseDI GACNNNNNNGTC 2 cut(s) 310, 720
Eam1104I CTCTTC 3 cut(s) 323, 350, 1286
Eam1105I GACNNNNNGTC 1 cut(s) 486
EarI CTCTTC 3 cut(s) 323, 350, 1286
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 4 cut(s) 282, 414, 1087, 1371
Eco24I GRGCYC 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 942
Eco47I GGWCC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 4 cut(s) 609, 683, 990, 1083
Eco88I CYCGRG 2 cut(s) 996, 1247
EcoICRI GAGCTC 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 1230
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 4 cut(s) 282, 414, 1087, 1371
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 4 cut(s) 282, 414, 1087, 1371
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 9 cut(s) 286, 418, 460, 545, 640, 652, 670, 1091, 1147
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 2 cut(s) 316, 811
FatI CATG 9 cut(s) 282, 414, 456, 541, 636, 648, 666, 1087, 1143
FauNDI CATATG 1 cut(s) 331
FblI GTMKAC 2 cut(s) 51, 255
Fnu4HI GCNGC 4 cut(s) 152, 155, 239, 1230
FokI GGATG 6 cut(s) 380, 431, 756, 914, 1265, 1388
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 4 cut(s) 152, 155, 239, 1230
FspBI CTAG 2 cut(s) 819, 1002
GlaI GCGC 1 cut(s) 1334
GluI GCNGC 4 cut(s) 152, 155, 239, 1230
GsaI CCCAGC 1 cut(s) 844
HaeIII GGCC 1 cut(s) 1092
HgaI GACGC 1 cut(s) 476
HhaI GCGC 1 cut(s) 1335
Hin1II CATG 9 cut(s) 286, 418, 460, 545, 640, 652, 670, 1091, 1147
Hin6I GCGC 1 cut(s) 1333
HinP1I GCGC 1 cut(s) 1333
HincII GTYRAC 2 cut(s) 52, 1099
HindII GTYRAC 2 cut(s) 52, 1099
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 6 cut(s) 179, 188, 212, 778, 854, 1303
HphI GGTGA 1 cut(s) 948
Hpy166II GTNNAC 4 cut(s) 52, 256, 1099, 1111
Hpy188I TCNGA 9 cut(s) 98, 135, 193, 702, 726, 970, 1054, 1308, 1327
Hpy188III TCNNGA 7 cut(s) 69, 491, 507, 711, 770, 782, 851
Hpy8I GTNNAC 4 cut(s) 52, 256, 1099, 1111
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 634, 1326
HpyCH4III ACNGT 6 cut(s) 386, 504, 614, 1021, 1108, 1354
HpyCH4V TGCA 9 cut(s) 166, 176, 238, 407, 442, 747, 1232, 1359, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 599, 753, 923, 1089
HpyF3I CTNAG 5 cut(s) 132, 372, 828, 1272, 1305
Hsp92II CATG 9 cut(s) 286, 418, 460, 545, 640, 652, 670, 1091, 1147
HspAI GCGC 1 cut(s) 1333
KspI CCGCGG 1 cut(s) 158
Kzo9I GATC 6 cut(s) 45, 93, 259, 622, 707, 836
LguI GCTCTTC 1 cut(s) 1286
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 3 cut(s) 138, 250, 1216
LweI GCATC 2 cut(s) 358, 734
MaeI CTAG 2 cut(s) 819, 1002
MaeIII GTNAC 3 cut(s) 312, 423, 448
MalI GATC 6 cut(s) 47, 95, 261, 624, 709, 838
MbiI CCGCTC 1 cut(s) 1182
MboI GATC 6 cut(s) 45, 93, 259, 622, 707, 836
MflI RGATCY 3 cut(s) 93, 622, 836
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 4 cut(s) 28, 556, 1162, 1388
MlyI GAGTC 3 cut(s) 188, 863, 1297
MseI TTAA 2 cut(s) 105, 275
MspA1I CMGCKG 2 cut(s) 157, 241
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 3 cut(s) 157, 217, 1335
MwoI GCNNNNNNNGC 5 cut(s) 163, 599, 753, 923, 1089
NcoI CCATGG 3 cut(s) 282, 414, 1087
NdeI CATATG 1 cut(s) 331
NdeII GATC 6 cut(s) 45, 93, 259, 622, 707, 836
NlaIII CATG 9 cut(s) 286, 418, 460, 545, 640, 652, 670, 1091, 1147
NlaIV GGNNCC 4 cut(s) 95, 304, 624, 838
NmuCI GTSAC 1 cut(s) 312
NspI RCATGY 2 cut(s) 670, 1147
PaeR7I CTCGAG 1 cut(s) 1247
PciI ACATGT 2 cut(s) 666, 1143
PciSI GCTCTTC 1 cut(s) 1286
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PfeI GAWTC 3 cut(s) 188, 212, 778
PkrI GCNGC 4 cut(s) 153, 156, 240, 1231
PleI GAGTC 3 cut(s) 187, 862, 1297
PpsI GAGTC 3 cut(s) 187, 862, 1297
PscI ACATGT 2 cut(s) 666, 1143
Psp124BI GAGCTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 840
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 4 cut(s) 95, 304, 624, 838
PspPI GGNCC 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 1247
PstI CTGCAG 1 cut(s) 1234
PsuI RGATCY 3 cut(s) 93, 622, 836
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 2 cut(s) 383, 823
RsaNI GTAC 2 cut(s) 382, 822
SacI GAGCTC 1 cut(s) 271
SacII CCGCGG 1 cut(s) 158
SalI GTCGAC 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 1286
SaqAI TTAA 2 cut(s) 105, 275
SatI GCNGC 4 cut(s) 152, 155, 239, 1230
Sau3AI GATC 6 cut(s) 45, 93, 259, 622, 707, 836
Sau96I GGNCC 1 cut(s) 303
ScaI AGTACT 1 cut(s) 823
SchI GAGTC 3 cut(s) 188, 863, 1297
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 2 cut(s) 358, 734
SfcI CTRYAG 3 cut(s) 681, 1104, 1230
Sfr274I CTCGAG 1 cut(s) 1247
Sfr303I CCGCGG 1 cut(s) 158
SgrBI CCGCGG 1 cut(s) 158
SinI GGWCC 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 1247
SmlI CTYRAG 1 cut(s) 1247
SmoI CTYRAG 1 cut(s) 1247
SpeI ACTAGT 1 cut(s) 818
Sse9I AATT 4 cut(s) 28, 556, 1162, 1388
SsiI CCGC 5 cut(s) 155, 157, 217, 899, 1180
SspMI CTAG 2 cut(s) 819, 1002
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 4 cut(s) 282, 414, 1087, 1371
TaaI ACNGT 6 cut(s) 386, 504, 614, 1021, 1108, 1354
TaqI TCGA 3 cut(s) 51, 783, 1248
TasI AATT 4 cut(s) 28, 556, 1162, 1388
TatI WGTACW 1 cut(s) 821
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 3 cut(s) 188, 212, 778
Tru1I TTAA 2 cut(s) 105, 275
Tru9I TTAA 2 cut(s) 105, 275
TscAI CASTG 2 cut(s) 836, 892
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 3 cut(s) 151, 238, 1229
Tsp45I GTSAC 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 2 cut(s) 836, 892
VpaK11BI GGWCC 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 1230
XapI RAATTY 2 cut(s) 28, 556
XceI RCATGY 2 cut(s) 670, 1147
XhoI CTCGAG 1 cut(s) 1247
XmiI GTMKAC 2 cut(s) 51, 255
XspI CTAG 2 cut(s) 819, 1002
ZrmI AGTACT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.