Rorug01G0359700

Mad3/BUB1 hoMad3/BUB1 homology region 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010450
Physical Location & Seq
Forward (+)
47553631 .. 47557075
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0359700.1

Sequence Viewer

Length: 2079 bp
ATGGTTTTATCAAATCGAAAGCTGAAGCAACAGCTCAGGGAGAAGATAGCCGATTCTTTATTGACATTCGAAATCGTTAAGTCCGACCCGAGCAATGACGGGTCTGCAAACCCTGACCCGAATTCGCAGCCCCAATCGCTGAGAGCGCTTCTGGGTTCCGCGACCCCGAAGCCCAGCTTGTCGAAGCGGGCGAAAAGGAGAAAGATCGCCGCTTTGCGAGGTCCGGCGGCGAGTGGCAGCGGCGGTAATTTTGAGGAAAACGAGGGGGAGGAAATTAGGGCAGAGGAATTGGGGGTTGAGAAGGAAAAGAGTGGAGCTTTGCGTTCGGCGGGAAATGGGGATTTGAAGAAGGACATTGGGTCGGAGAGTTTGGGGAAGAAGAAGAAGAAGAAGGAAAAGAGTGGAGATTTGGGTGCAGAGGGAAATGGGGATTTGGAGGAAGAGAAAAGTGAAATTGGGTCAGAGAGTTTGGGGAAGAAGAAGAGGAAGAGAGATGAGGAAGAAAAGAGTGGAGATTTGAGTTCAGAGGAAAATGGGGGTGTGAAGGAGGCTAAGAAACCAAAGAAGAAGAAGCCCAAGTGGAAGAAGAAGAAGGAGGCAAAGAGTGAGGAAGAGAAGGGTTTTGAGGTTGTGAGGGAAGACAAGAAGGGATTTGAGGTTGTGAGGGAAGAGGAAGGTGTCAATGAGACTAATATGGAAACTGAAAGGCAAGCAAATGGGGAAGTTGCGACAAAAGTTTATGTTGGAGGGATTCCTTATTACTCGACGGAGGATGATATTCGAAGTTACTTTGAAAGCTGTGGCTCCATTACTGAGATTGATTGTATGAAGTTTCCTGACAGTGGGAAGTTCAAAGGAATTGCCATTATTAGCTTTAGGACAGAAGCTGCAGCTAAACGAGCCTTGGCTCTTGATGGAGCTGACATGGGTGGACTGTTTCTGAAAATCCAACCTTACAAAACAACTCGGGTCAATAAAGTAGTCAATAAAGTATCTGATTTTGCCCCAAAAATTGTGGAGGGCTACAATAGAATCTACGTTGGAAATTTGTCTTGGGATATCACTGAGGACGAACTGAGGAAACTTTTCTCAGATTGCAAGATATCGTCTATCAATTTTGGCATGGATAAGGAAACAGGAGAATTCCGAGGCTATGCCCATGTGGAATTTTCCGACAGTCTCTCACTGACAATGGCATTGAAGTTGGATCAGAAGATTGTTCTGGGGAGACCTGTCAAGATAAGCTGTGCAGTTCCTCTGAGAAAACCAGGGATCCATCCCAAGTCTGTATCCACAACTACGGGTACCCTTTCGGAGGCTGTAGCTATTACTGCAAGTGCAGGAGCTGATAATGCCGGGTTGAGTGCCATCAGTGGTAAGCTTAAGAGAAGGACCTGCTATGAGTGTGGTGAAAAGGGCCATGTTTCTTCACTTTGTCCAATGAAGCAACCTGTGAATGTAATAGATACTAATGCATCCTATACAAAGCCTGTAACGAGTACAAGTATGCTTTTGGAGTCTGTAACAACAAGTACAGAAGCTGCTAATACTGAGTTGAGTTCTGTCAGTGGTAAGATCAAGAGAAGGACATGCTATGAGTGTGGTGAAAAGGGCCATGTTTCTACAGCTTGTCCAAAGAAGCAATCTGCTGGTGCAATAATAGATACCAATGCCACCCCTATGATGCCTGTACATACAATTACAAGTCCTGTATGGGAGTCCGTAGCTATAACTCCAAGTACAGGAGTTGATGATACTGGGTTGAGTTCCATCAGCGGTAAGATTAAGAGAAGAACATGTTACGAATGTGGGGAAAAAGGTCATGTTTCTACAGCTTGTCCAAACAAACAATATGCTCAGCCAATAGTAACCACTGCAAGTCATATGAAGCCTGTACCTACAACTCCAACACCCCTTCTGGAGTCTGCAGCTACAACTACAAGTACAGAACCCGATAATGCTGGGTTGAGCTCCATTAGCGGTAAGATTAAGAGAAGGACGTGCTATGAGTGTGGTGAAAAGGGCCATATATCTTCAGCTTGTCCAAAGAAACAATCTGTCGATAACAATGCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mad3_BUB1_I

Protein Analysis

692

Amino Acids

74.66

Weight (kDa)

8.9

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 246 - 313 4.5e-13 RNA recognition motif
RRM_1 PF00076 345 - 412 1.5e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05510
fragaria_vesca FvH4_7g24900 FvH4_7g24900 FvH4_7g24900 FvH4_7g24900 FvH4_7g24900
malus_domestica MD01G1156700.v1.1 MD07G1225400.v1.1
prunus_persica Prupe.2G254200_v2.0.a1
pyrus_communis pycom01g17350 pycom07g20410
rosa_chinensis RchiOBHm_Chr1g0370781
rosa_laevigata RLG00000027010
rosa_multiflora Rmu_sc0009474.1_g000004
rosa_roxburghii Rroxscaffold_4G00286230
rosa_rugosa Rorug01G0359700
rosa_samantha Rh1AG368800 Rh1BG332400 Rh1CG346300 Rh1DG363800
rosa_wichuraiana Rw1G032470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1403
Acc65I GGTACC 1 cut(s) 1304
AccB1I GGYRCC 1 cut(s) 1304
AccII CGCG 1 cut(s) 161
AciI CCGC 9 cut(s) 159, 187, 210, 227, 240, 243, 329, 1776, 1980
AclWI GGATC 3 cut(s) 1215, 1267, 1280
AcsI RAATTY 4 cut(s) 121, 1045, 1142, 1166
AcuI CTGAAG 2 cut(s) 44, 2019
AfaI GTAC 7 cut(s) 1306, 1501, 1534, 1692, 1741, 1896, 1945
AfeI AGCGCT 1 cut(s) 147
AfiI CCNNNNNNNGG 3 cut(s) 842, 1315, 1742
AflII CTTAAG 1 cut(s) 1382
AflIII ACRYGT 1 cut(s) 1796
AgsI TTSAA 4 cut(s) 346, 794, 853, 1201
AhdI GACNNNNNGTC 1 cut(s) 358
AjiI CACGTC 1 cut(s) 2001
AjnI CCWGG 1 cut(s) 1267
AjuI GAANNNNNNNTTGG 2 cut(s) 1036, 1068
Alw21I GWGCWC 1 cut(s) 1973
Alw26I GTCTC 3 cut(s) 680, 1184, 1222
AlwI GGATC 3 cut(s) 1215, 1267, 1280
AlwNI CAGNNNCTG 3 cut(s) 887, 1346, 1541
Ama87I CYCGRG 2 cut(s) 88, 966
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 3 cut(s) 1417, 1612, 2023
ApeKI GCWGC 6 cut(s) 127, 237, 887, 890, 1541, 1928
ApoI RAATTY 4 cut(s) 121, 1045, 1142, 1166
Asp700I GAANNNNTTC 1 cut(s) 1085
Asp718I GGTACC 1 cut(s) 1304
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 5 cut(s) 221, 1392, 1417, 1612, 2023
AsuC2I CCSGG 1 cut(s) 1357
AsuHPI GGTGA 3 cut(s) 1421, 1616, 2027
AsuII TTCGAA 2 cut(s) 69, 781
AvaI CYCGRG 2 cut(s) 88, 966
AvaII GGWCC 2 cut(s) 221, 1392
BamHI GGATCC 1 cut(s) 1272
BanI GGYRCC 1 cut(s) 1304
BanII GRGCYC 1 cut(s) 1973
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 1973
BbvI GCAGC 6 cut(s) 139, 249, 874, 902, 1528, 1940
BccI CCATC 4 cut(s) 908, 1284, 1376, 1778
BcgI CGANNNNNNTGC 1 cut(s) 2051
BciT130I CCWGG 1 cut(s) 1269
BciVI GTATCC 1 cut(s) 1300
BcnI CCSGG 1 cut(s) 1357
BcoDI GTCTC 3 cut(s) 680, 1184, 1222
BfmI CTRYAG 5 cut(s) 888, 1320, 1623, 1830, 1926
BfoI RGCGCY 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 1382
BfuAI ACCTGC 1 cut(s) 1403
BfuI GTATCC 1 cut(s) 1300
BisI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 888, 891, 1542, 1929
BlpI GCTNAGC 1 cut(s) 1857
BlsI GCNGC 9 cut(s) 129, 211, 229, 239, 242, 889, 892, 1543, 1930
Bme1390I CCNGG 2 cut(s) 1269, 1357
Bme18I GGWCC 2 cut(s) 221, 1392
BmeRI GACNNNNNGTC 1 cut(s) 358
BmeT110I CYCGRG 2 cut(s) 88, 966
BmgBI CACGTC 1 cut(s) 2001
BmgT120I GGNCC 5 cut(s) 221, 1392, 1417, 1612, 2023
BmiI GGNNCC 4 cut(s) 157, 805, 1274, 1306
BmrFI CCNGG 2 cut(s) 1269, 1357
BmrI ACTGGG 1 cut(s) 1767
BmsI GCATC 2 cut(s) 1484, 1674
BmuI ACTGGG 1 cut(s) 1767
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 1940
Bpu10I CCTNAGC 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 1857
Bpu14I TTCGAA 2 cut(s) 69, 781
BpuMI CCSGG 1 cut(s) 1357
BsaI GGTCTC 1 cut(s) 1222
BsaJI CCNNGG 3 cut(s) 903, 1147, 1268
Bsc4I CCNNNNNNNGG 3 cut(s) 842, 1315, 1742
Bse1I ACTGG 1 cut(s) 1762
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 1269
BseDI CCNNGG 3 cut(s) 903, 1147, 1268
BseGI GGATG 3 cut(s) 778, 1276, 1475
BseLI CCNNNNNNNGG 3 cut(s) 842, 1315, 1742
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 9 cut(s) 49, 131, 804, 1056, 1067, 1104, 1250, 1542, 1871
BseNI ACTGG 1 cut(s) 1762
BseXI GCAGC 6 cut(s) 139, 249, 874, 902, 1528, 1940
BseYI CCCAGC 2 cut(s) 173, 1961
BsgI GTGCAG 3 cut(s) 435, 1269, 1359
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 3 cut(s) 1419, 1614, 2025
BshNI GGYRCC 1 cut(s) 1304
BsiHKAI GWGCWC 1 cut(s) 1973
BsiHKCI CYCGRG 2 cut(s) 88, 966
BsiSI CCGG 2 cut(s) 224, 1356
BslI CCNNNNNNNGG 3 cut(s) 842, 1315, 1742
BsmAI GTCTC 3 cut(s) 680, 1184, 1222
BsnI GGCC 3 cut(s) 1419, 1614, 2025
Bso31I GGTCTC 1 cut(s) 1222
BsoBI CYCGRG 2 cut(s) 88, 966
Bsp119I TTCGAA 2 cut(s) 69, 781
Bsp1286I GDGCHC 1 cut(s) 1973
Bsp1407I TGTACA 1 cut(s) 1690
Bsp143I GATC 4 cut(s) 204, 1207, 1272, 1575
Bsp1720I GCTNAGC 1 cut(s) 1857
BspACI CCGC 9 cut(s) 159, 187, 210, 227, 240, 243, 329, 1776, 1980
BspANI GGCC 3 cut(s) 1419, 1614, 2025
BspCNI CTCAG 9 cut(s) 48, 132, 805, 1057, 1068, 1103, 1251, 1543, 1870
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 4 cut(s) 157, 805, 1274, 1306
BspMAI CTGCAG 2 cut(s) 892, 1930
BspMI ACCTGC 1 cut(s) 1403
BspPI GGATC 3 cut(s) 1215, 1267, 1280
BspT104I TTCGAA 2 cut(s) 69, 781
BspT107I GGYRCC 1 cut(s) 1304
BspTI CTTAAG 1 cut(s) 1382
BspTNI GGTCTC 1 cut(s) 1222
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 1690
BsrI ACTGG 1 cut(s) 1762
BssECI CCNNGG 3 cut(s) 903, 1147, 1268
BssMI GATC 4 cut(s) 204, 1207, 1272, 1575
BssT1I CCWWGG 1 cut(s) 903
Bst2UI CCWGG 1 cut(s) 1269
Bst4CI ACNGT 3 cut(s) 842, 936, 1178
Bst6I CTCTTC 5 cut(s) 435, 476, 482, 606, 663
BstAFI CTTAAG 1 cut(s) 1382
BstAUI TGTACA 1 cut(s) 1690
BstBI TTCGAA 2 cut(s) 69, 781
BstC8I GCNNGC 3 cut(s) 189, 711, 2074
BstENI CCTNNNNNAGG 1 cut(s) 1313
BstF5I GGATG 3 cut(s) 778, 1276, 1475
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 4 cut(s) 207, 1210, 1275, 1578
BstMAI GTCTC 3 cut(s) 680, 1184, 1222
BstMBI GATC 4 cut(s) 204, 1207, 1272, 1575
BstMWI GCNNNNNNNGC 6 cut(s) 136, 145, 899, 1331, 1352, 1977
BstNI CCWGG 1 cut(s) 1269
BstNSI RCATGY 2 cut(s) 1593, 1800
BstSCI CCNGG 2 cut(s) 1267, 1355
BstSFI CTRYAG 5 cut(s) 888, 1320, 1623, 1830, 1926
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 6 cut(s) 139, 249, 874, 902, 1528, 1940
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 1272
BstYI RGATCY 1 cut(s) 1272
BsuI GTATCC 1 cut(s) 1300
BsuRI GGCC 3 cut(s) 1419, 1614, 2025
BtrI CACGTC 1 cut(s) 2001
BtsCI GGATG 3 cut(s) 778, 1276, 1475
BtsI GCAGTG 1 cut(s) 1872
BtsIMutI CAGTG 6 cut(s) 847, 1062, 1184, 1378, 1573, 1872
BveI ACCTGC 1 cut(s) 1403
Cac8I GCNNGC 3 cut(s) 189, 711, 2074
CaiI CAGNNNCTG 3 cut(s) 887, 1346, 1541
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 5 cut(s) 221, 1392, 1417, 1612, 2023
Csp6I GTAC 7 cut(s) 1305, 1500, 1533, 1691, 1740, 1895, 1944
CspCI CAANNNNNGTGG 2 cut(s) 996, 1031
CviAII CATG 8 cut(s) 925, 1123, 1160, 1421, 1590, 1616, 1797, 1823
CviQI GTAC 7 cut(s) 1305, 1500, 1533, 1691, 1740, 1895, 1944
DpnI GATC 4 cut(s) 206, 1209, 1274, 1577
DpnII GATC 4 cut(s) 204, 1207, 1272, 1575
DriI GACNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 5 cut(s) 435, 476, 482, 606, 663
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 5 cut(s) 435, 476, 482, 606, 663
Ecl136II GAGCTC 1 cut(s) 1971
Eco130I CCWWGG 1 cut(s) 903
Eco24I GRGCYC 1 cut(s) 1973
Eco31I GGTCTC 1 cut(s) 1222
Eco32I GATATC 2 cut(s) 1060, 1104
Eco47I GGWCC 2 cut(s) 221, 1392
Eco47III AGCGCT 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 1971
Eco57I CTGAAG 2 cut(s) 44, 2019
Eco88I CYCGRG 2 cut(s) 88, 966
EcoICRI GAGCTC 1 cut(s) 1971
EcoNI CCTNNNNNAGG 1 cut(s) 1313
EcoO109I RGGNCCY 1 cut(s) 1392
EcoRI GAATTC 2 cut(s) 121, 1142
EcoRII CCWGG 1 cut(s) 1267
EcoRV GATATC 2 cut(s) 1060, 1104
EcoT14I CCWWGG 1 cut(s) 903
EcoT22I ATGCAT 1 cut(s) 1477
EcoT38I GRGCYC 1 cut(s) 1973
ErhI CCWWGG 1 cut(s) 903
FaeI CATG 8 cut(s) 928, 1126, 1163, 1424, 1593, 1619, 1800, 1826
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 8 cut(s) 924, 1122, 1159, 1420, 1589, 1615, 1796, 1822
FauI CCCGC 2 cut(s) 180, 322
FauNDI CATATG 1 cut(s) 1884
Fnu4HI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 888, 891, 1542, 1929
FokI GGATG 3 cut(s) 785, 1263, 1462
FriOI GRGCYC 1 cut(s) 1973
Fsp4HI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 888, 891, 1542, 1929
GlaI GCGC 1 cut(s) 147
GluI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 888, 891, 1542, 1929
GsaI CCCAGC 2 cut(s) 177, 1965
GsuI CTGGAG 1 cut(s) 1940
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 3 cut(s) 1419, 1614, 2025
HapII CCGG 2 cut(s) 224, 1356
HhaI GCGC 1 cut(s) 148
Hin1II CATG 8 cut(s) 928, 1126, 1163, 1424, 1593, 1619, 1800, 1826
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 1379
HinfI GANTC 6 cut(s) 53, 751, 1032, 1517, 1718, 1922
HpaII CCGG 2 cut(s) 224, 1356
HphI GGTGA 3 cut(s) 1421, 1616, 2027
Hpy166II GTNNAC 1 cut(s) 932
Hpy188III TCNNGA 5 cut(s) 836, 911, 1237, 1579, 1919
Hpy8I GTNNAC 1 cut(s) 932
Hpy99I CGWCG 1 cut(s) 769
HpyCH4III ACNGT 3 cut(s) 842, 936, 1178
HpyCH4IV ACGT 2 cut(s) 1038, 2000
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 145, 899, 1331, 1352, 1977
HpySE526I ACGT 2 cut(s) 1038, 2000
Hsp92II CATG 8 cut(s) 928, 1126, 1163, 1424, 1593, 1619, 1800, 1826
HspAI GCGC 1 cut(s) 146
KpnI GGTACC 1 cut(s) 1308
Kzo9I GATC 4 cut(s) 204, 1207, 1272, 1575
LmnI GCTCC 5 cut(s) 314, 809, 917, 1343, 1976
Lsp1109I GCAGC 6 cut(s) 139, 249, 874, 902, 1528, 1940
LweI GCATC 2 cut(s) 1484, 1674
MaeII ACGT 2 cut(s) 1038, 2000
MaeIII GTNAC 5 cut(s) 785, 1492, 1522, 1799, 1867
MalI GATC 4 cut(s) 206, 1209, 1274, 1577
MboI GATC 4 cut(s) 204, 1207, 1272, 1575
MflI RGATCY 1 cut(s) 1272
MhlI GDGCHC 1 cut(s) 1973
MlyI GAGTC 3 cut(s) 1526, 1727, 1931
MmeI TCCRAC 8 cut(s) 108, 342, 724, 973, 1021, 1185, 1197, 1931
Mph1103I ATGCAT 1 cut(s) 1477
MroXI GAANNNNTTC 1 cut(s) 1085
MseI TTAA 4 cut(s) 78, 1383, 1785, 1989
MslI CAYNNNNRTG 1 cut(s) 1679
MspA1I CMGCKG 2 cut(s) 240, 1776
MspCI CTTAAG 1 cut(s) 1382
MspI CCGG 2 cut(s) 224, 1356
MspR9I CCNGG 2 cut(s) 1269, 1357
MvaI CCWGG 1 cut(s) 1269
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 6 cut(s) 136, 145, 899, 1331, 1352, 1977
NciI CCSGG 1 cut(s) 1357
NdeI CATATG 1 cut(s) 1884
NdeII GATC 4 cut(s) 204, 1207, 1272, 1575
NlaIII CATG 8 cut(s) 928, 1126, 1163, 1424, 1593, 1619, 1800, 1826
NlaIV GGNNCC 4 cut(s) 157, 805, 1274, 1306
NsiI ATGCAT 1 cut(s) 1477
NspI RCATGY 2 cut(s) 1593, 1800
NspV TTCGAA 2 cut(s) 69, 781
PciI ACATGT 1 cut(s) 1796
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 188
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 3 cut(s) 53, 751, 1032
PkrI GCNGC 9 cut(s) 129, 211, 229, 239, 242, 889, 892, 1543, 1930
PleI GAGTC 3 cut(s) 1525, 1726, 1930
PpsI GAGTC 3 cut(s) 1525, 1726, 1930
PpuMI RGGWCCY 1 cut(s) 1392
PscI ACATGT 1 cut(s) 1796
Psp124BI GAGCTC 1 cut(s) 1973
Psp5II RGGWCCY 1 cut(s) 1392
Psp6I CCWGG 1 cut(s) 1267
PspFI CCCAGC 2 cut(s) 173, 1961
PspGI CCWGG 1 cut(s) 1267
PspN4I GGNNCC 4 cut(s) 157, 805, 1274, 1306
PspPI GGNCC 5 cut(s) 221, 1392, 1417, 1612, 2023
PspPPI RGGWCCY 1 cut(s) 1392
PstI CTGCAG 2 cut(s) 892, 1930
PstNI CAGNNNCTG 3 cut(s) 887, 1346, 1541
PsuI RGATCY 1 cut(s) 1272
RsaI GTAC 7 cut(s) 1306, 1501, 1534, 1692, 1741, 1896, 1945
RsaNI GTAC 7 cut(s) 1305, 1500, 1533, 1691, 1740, 1895, 1944
RseI CAYNNNNRTG 1 cut(s) 1679
SacI GAGCTC 1 cut(s) 1973
SaqAI TTAA 4 cut(s) 78, 1383, 1785, 1989
SatI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 888, 891, 1542, 1929
Sau3AI GATC 4 cut(s) 204, 1207, 1272, 1575
Sau96I GGNCC 5 cut(s) 221, 1392, 1417, 1612, 2023
SchI GAGTC 3 cut(s) 1526, 1727, 1931
ScrFI CCNGG 2 cut(s) 1269, 1357
SduI GDGCHC 1 cut(s) 1973
SfaNI GCATC 2 cut(s) 1484, 1674
SfcI CTRYAG 5 cut(s) 888, 1320, 1623, 1830, 1926
SfuI TTCGAA 2 cut(s) 69, 781
SinI GGWCC 2 cut(s) 221, 1392
SmiMI CAYNNNNRTG 1 cut(s) 1679
SmlI CTYRAG 1 cut(s) 1382
SmoI CTYRAG 1 cut(s) 1382
SsiI CCGC 9 cut(s) 159, 187, 210, 227, 240, 243, 329, 1776, 1980
SstI GAGCTC 1 cut(s) 1973
StyD4I CCNGG 2 cut(s) 1267, 1355
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 3 cut(s) 842, 936, 1178
TaiI ACGT 2 cut(s) 1041, 2003
TaqI TCGA 6 cut(s) 16, 69, 182, 764, 781, 2061
TatI WGTACW 5 cut(s) 1499, 1532, 1690, 1739, 1943
TauI GCSGC 3 cut(s) 212, 230, 243
TfiI GAWTC 3 cut(s) 53, 751, 1032
Tru1I TTAA 4 cut(s) 78, 1383, 1785, 1989
Tru9I TTAA 4 cut(s) 78, 1383, 1785, 1989
TscAI CASTG 6 cut(s) 847, 1069, 1191, 1378, 1573, 1879
TseI GCWGC 6 cut(s) 127, 237, 887, 890, 1541, 1928
TspDTI ATGAA 3 cut(s) 842, 1457, 1901
TspGWI ACGGA 2 cut(s) 782, 1711
TspRI CASTG 6 cut(s) 847, 1069, 1191, 1378, 1573, 1879
Vha464I CTTAAG 1 cut(s) 1382
VpaK11BI GGWCC 2 cut(s) 221, 1392
XagI CCTNNNNNAGG 1 cut(s) 1313
XapI RAATTY 4 cut(s) 121, 1045, 1142, 1166
XceI RCATGY 2 cut(s) 1593, 1800
XmnI GAANNNNTTC 1 cut(s) 1085
Zsp2I ATGCAT 1 cut(s) 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.