Rh1DG363800

Mad3/BUB1 hoMad3/BUB1 homology region 1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
59018599 .. 59020883
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG363800.1

Sequence Viewer

Length: 1563 bp
ATGGCCAGCAACGATCTCTTCACGTCCTTAATCTCCGACATCAAATCCTACTCCGGCAAAGACCTTCTTCTCCCTTGGCTAAGAGGGATTCGCAGACTTCAAGACTCACTTCCGCAGAACATTCTAGAGGACAAGCTGCCCCGCTTCTTGCAGAAATGCGCGCAGAGCTTCCAGTCCGACGAGCGCTACCGGAACGACCCGCGGTACCTCCGAGTCTGGTTGAAGCTGATGGATTTTGTGGAGGATCCGAGAGAGCTTTTGAGGACGATGGAGGCGGATCGGATTGGGACGAAGCACCCTCTTTTCTACCAGGCATATGCTCTTTACTATGAGAAGAACAAGAAATTTGAGGAGGCTGAGAAGATGTACCATTTGGGGGTGCAGAACCATGCAGATCCCATTGAAGAACTAGAGAAAGCATATGAGCAGTTCCTGCAGCGCATGGAGAGACACAGGAAACGGAAACACCAGGAAAAGAGAACCACAAAAAGAGTAACAGATCGGAGTGGAGTCTCTCGTATTAATAGAGAAAGGAAAAATGAAAAGGAATGCAGGATCGGTGATAGGCCTACAGAAGCCCGGCATGATGGACCTAGAAGTAAGCATCAAGTGACTGCTGGAGGAGGGTCAGATGAACGGATGTTGCCTTGCAGCGATGATACAGTCGTGGGGAAGTTTGTAGACACTGCCATTGTCGGAAAATCTGAAGCAGAAGATGCTTGTCACCATGGACTGGTGGATCCTACTATAAACATGAAAGAGGCCATGAGTGCCATAAATAGTATGTTTCGAGAGCCTTTAGAGATGACTCCAGTTAGAAGAGGATCACGCCAATGCCAACAAAAGGAAAATAACACAAACAATGGATTCCAGGTGTTTGTTGATGAAAACTTGGATAAGGGAGGCAAATCAAAAGATAAAGGTGTTTCAATGGTGCAGCAAAGTAGAACTGCTACCCATCAGTCTCACCGAGAACCTTTAAACATTTTCATTGATGATGATCAAGATAGCCTTGATCAGAGTGAAGCTCAGAATATGACAGAAGATTCTTCCCCATCTGCTTCACATGGAAATGCTTTTGTGTTTCTGAATCCAAAAGATGTTTCAAGTGAAAGTCCTAATGGTTTGGATGTCGAAGGTTCATCTAGACCAAGGTTTAGAGAGGATACGATGATGGTTCGTAGGATTGTTGGGACCACCATTTCAGAGGACCCGCAGGTGGAAAACGCTTGCCACCATGGCTTAGTTGAACCAACTATCAACTTAAAGGAGGCCATGGATGATATCAATAACATGTTTGGCAAGCCAATAGATTTTGTTAGAAGCAGAAGAGTTAAAAGGCAGGACAAAGCACCAGAGAAGAAACAAGATCTTGGTGGGTTTTGTATACTTCCTGATGATGAAGATGACGATGACGATGATAACTTGGAACAACAACAAGTGCAGAAAATGAAAGATCTACCGGGAAAATCAAAAGATTCTGATCTGTTTGAGACTACTGTTTTTACAAAGCAGGCCATGGATGATATCAATAAGATGTTTGGAATGCCACTGGACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

520

Amino Acids

59.86

Weight (kDa)

5.66

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mad3_BUB1_I PF08311 10 - 127 5.4e-36 Mad3/BUB1 homology region 1
Mad3_BUB1_I_2 PF17014 63 - 163 1e-05 Putative Mad3/BUB1 like region 1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010450)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1207
Acc36I ACCTGC 1 cut(s) 1207
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 733
AccI GTMKAC 2 cut(s) 681, 1387
AccII CGCG 2 cut(s) 161, 202
AciI CCGC 6 cut(s) 113, 142, 200, 202, 275, 1214
AclWI GGATC 8 cut(s) 239, 252, 285, 389, 563, 734, 747, 832
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 2 cut(s) 206, 368
AfeI AGCGCT 1 cut(s) 185
AfiI CCNNNNNNNGG 4 cut(s) 376, 733, 844, 1219
AflIII ACRYGT 1 cut(s) 1293
AgsI TTSAA 6 cut(s) 101, 223, 404, 930, 1107, 1250
AjiI CACGTC 1 cut(s) 24
AjnI CCWGG 3 cut(s) 309, 468, 870
AjuI GAANNNNNNNTTGG 2 cut(s) 1087, 1119
AluBI AGCT 5 cut(s) 136, 168, 226, 256, 1028
AluI AGCT 5 cut(s) 136, 168, 226, 256, 1028
Alw26I GTCTC 4 cut(s) 442, 517, 969, 1487
AlwI GGATC 8 cut(s) 239, 252, 285, 389, 563, 734, 747, 832
AlwNI CAGNNNCTG 1 cut(s) 433
Aor51HI AGCGCT 1 cut(s) 185
AoxI GGCC 5 cut(s) 3, 566, 762, 1272, 1515
ApeKI GCWGC 4 cut(s) 136, 436, 651, 937
ApoI RAATTY 1 cut(s) 344
AseI ATTAAT 1 cut(s) 522
Asp718I GGTACC 1 cut(s) 204
AspLEI GCGC 4 cut(s) 161, 163, 186, 441
AspS9I GGNCC 3 cut(s) 590, 1194, 1210
AsuC2I CCSGG 2 cut(s) 580, 1464
AsuHPI GGTGA 3 cut(s) 572, 716, 959
AvaII GGWCC 3 cut(s) 590, 1194, 1210
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 244, 739
BanI GGYRCC 1 cut(s) 204
BbvI GCAGC 4 cut(s) 123, 448, 663, 949
BccI CCATC 6 cut(s) 223, 262, 581, 966, 1063, 1168
BciT130I CCWGG 3 cut(s) 311, 470, 872
BciVI GTATCC 1 cut(s) 1159
BclI TGATCA 2 cut(s) 1000, 1015
BcnI CCSGG 2 cut(s) 580, 1464
BcoDI GTCTC 4 cut(s) 442, 517, 969, 1487
BfaI CTAG 4 cut(s) 125, 410, 594, 1146
BfmI CTRYAG 2 cut(s) 434, 570
BfoI RGCGCY 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 1207
BfuI GTATCC 1 cut(s) 1159
BglI GCCNNNNNGGC 1 cut(s) 1239
BglII AGATCT 2 cut(s) 1369, 1456
BisI GCNGC 4 cut(s) 137, 437, 652, 938
BlsI GCNGC 4 cut(s) 138, 438, 653, 939
Bme1390I CCNGG 5 cut(s) 311, 470, 580, 872, 1464
Bme18I GGWCC 3 cut(s) 590, 1194, 1210
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 3 cut(s) 590, 1194, 1210
BmiI GGNNCC 5 cut(s) 206, 246, 741, 1195, 1212
BmrFI CCNGG 5 cut(s) 311, 470, 580, 872, 1464
BmsI GCATC 2 cut(s) 613, 706
BplI GAGNNNNNCTC 2 cut(s) 1012, 1044
BpmI CTGGAG 2 cut(s) 639, 795
BpuMI CCSGG 2 cut(s) 580, 1464
BsaBI GATNNNNATC 2 cut(s) 999, 1482
BsaJI CCNNGG 7 cut(s) 74, 200, 727, 1151, 1237, 1275, 1518
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 4 cut(s) 376, 733, 844, 1219
Bse1I ACTGG 4 cut(s) 172, 738, 812, 1557
Bse8I GATNNNNATC 2 cut(s) 999, 1482
BseBI CCWGG 3 cut(s) 311, 470, 872
BseDI CCNNGG 7 cut(s) 74, 200, 727, 1151, 1237, 1275, 1518
BseGI GGATG 4 cut(s) 645, 1135, 1285, 1528
BseJI GATNNNNATC 2 cut(s) 999, 1482
BseLI CCNNNNNNNGG 4 cut(s) 376, 733, 844, 1219
BseMII CTCAG 2 cut(s) 348, 1043
BseNI ACTGG 4 cut(s) 172, 738, 812, 1557
BsePI GCGCGC 1 cut(s) 159
BseRI GAGGAG 2 cut(s) 365, 636
BseXI GCAGC 4 cut(s) 123, 448, 663, 949
BsgI GTGCAG 3 cut(s) 401, 956, 1463
Bsh1236I CGCG 2 cut(s) 161, 202
BshFI GGCC 5 cut(s) 5, 568, 764, 1274, 1517
BshNI GGYRCC 1 cut(s) 204
BsiSI CCGG 4 cut(s) 54, 190, 580, 1463
BslFI GGGAC 2 cut(s) 301, 1207
BslI CCNNNNNNNGG 4 cut(s) 376, 733, 844, 1219
BsmAI GTCTC 4 cut(s) 442, 517, 969, 1487
BsmFI GGGAC 2 cut(s) 301, 1207
BsmI GAATGC 2 cut(s) 554, 1551
BsnI GGCC 5 cut(s) 5, 568, 764, 1274, 1517
Bsp19I CCATGG 4 cut(s) 727, 1237, 1275, 1518
BspACI CCGC 6 cut(s) 113, 142, 200, 202, 275, 1214
BspANI GGCC 5 cut(s) 5, 568, 764, 1274, 1517
BspCNI CTCAG 2 cut(s) 349, 1042
BspFNI CGCG 2 cut(s) 161, 202
BspLI GGNNCC 5 cut(s) 206, 246, 741, 1195, 1212
BspMAI CTGCAG 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 1207
BspPI GGATC 8 cut(s) 239, 252, 285, 389, 563, 734, 747, 832
BspT107I GGYRCC 1 cut(s) 204
BsrI ACTGG 4 cut(s) 172, 738, 812, 1557
BssECI CCNNGG 7 cut(s) 74, 200, 727, 1151, 1237, 1275, 1518
BssHII GCGCGC 1 cut(s) 159
BssNAI GTATAC 1 cut(s) 1388
BssT1I CCWWGG 6 cut(s) 74, 727, 1151, 1237, 1275, 1518
Bst1107I GTATAC 1 cut(s) 1388
Bst2UI CCWGG 3 cut(s) 311, 470, 872
Bst4CI ACNGT 2 cut(s) 664, 1501
Bst6I CTCTTC 3 cut(s) 23, 814, 1324
BstAPI GCANNNNNTGC 2 cut(s) 433, 716
BstC8I GCNNGC 5 cut(s) 7, 161, 1231, 1304, 1515
BstDEI CTNAG 4 cut(s) 80, 357, 1029, 1243
BstDSI CCRYGG 5 cut(s) 200, 727, 1237, 1275, 1518
BstF5I GGATG 4 cut(s) 645, 1135, 1285, 1528
BstFNI CGCG 2 cut(s) 161, 202
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 4 cut(s) 161, 163, 186, 441
BstMAI GTCTC 4 cut(s) 442, 517, 969, 1487
BstMWI GCNNNNNNNGC 5 cut(s) 165, 433, 716, 770, 1239
BstNI CCWGG 3 cut(s) 311, 470, 872
BstNSI RCATGY 1 cut(s) 1297
BstSCI CCNGG 5 cut(s) 309, 468, 578, 870, 1462
BstSFI CTRYAG 2 cut(s) 434, 570
BstUI CGCG 2 cut(s) 161, 202
BstV1I GCAGC 4 cut(s) 123, 448, 663, 949
BstX2I RGATCY 5 cut(s) 244, 394, 739, 1369, 1456
BstYI RGATCY 5 cut(s) 244, 394, 739, 1369, 1456
BstZ17I GTATAC 1 cut(s) 1388
BsuI GTATCC 1 cut(s) 1159
BsuRI GGCC 5 cut(s) 5, 568, 764, 1274, 1517
BtgI CCRYGG 5 cut(s) 200, 727, 1237, 1275, 1518
BtgZI GCGATG 1 cut(s) 669
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 4 cut(s) 645, 1135, 1285, 1528
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 684, 1550
BveI ACCTGC 1 cut(s) 1207
Cac8I GCNNGC 5 cut(s) 7, 161, 1231, 1304, 1515
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 4 cut(s) 161, 163, 186, 441
Cfr13I GGNCC 3 cut(s) 590, 1194, 1210
Cfr42I CCGCGG 1 cut(s) 203
Csp6I GTAC 2 cut(s) 205, 367
CviQI GTAC 2 cut(s) 205, 367
DdeI CTNAG 4 cut(s) 80, 357, 1029, 1243
DraI TTTAAA 1 cut(s) 981
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 23, 814, 1324
EarI CTCTTC 3 cut(s) 23, 814, 1324
EciI GGCGGA 1 cut(s) 290
Eco130I CCWWGG 6 cut(s) 74, 727, 1151, 1237, 1275, 1518
Eco147I AGGCCT 1 cut(s) 568
Eco32I GATATC 2 cut(s) 1285, 1528
Eco47I GGWCC 3 cut(s) 590, 1194, 1210
Eco47III AGCGCT 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 1210
EcoRII CCWGG 3 cut(s) 309, 468, 870
EcoRV GATATC 2 cut(s) 1285, 1528
EcoT14I CCWWGG 6 cut(s) 74, 727, 1151, 1237, 1275, 1518
ErhI CCWWGG 6 cut(s) 74, 727, 1151, 1237, 1275, 1518
FalI AAGNNNNNCTT 6 cut(s) 51, 83, 93, 125, 996, 1028
FaqI GGGAC 2 cut(s) 301, 1207
FauI CCCGC 3 cut(s) 149, 207, 1221
FauNDI CATATG 2 cut(s) 316, 421
FbaI TGATCA 2 cut(s) 1000, 1015
FblI GTMKAC 2 cut(s) 681, 1387
Fnu4HI GCNGC 4 cut(s) 137, 437, 652, 938
FokI GGATG 4 cut(s) 652, 1142, 1292, 1535
Fsp4HI GCNGC 4 cut(s) 137, 437, 652, 938
FspBI CTAG 4 cut(s) 125, 410, 594, 1146
GlaI GCGC 4 cut(s) 160, 162, 185, 440
GluI GCNGC 4 cut(s) 137, 437, 652, 938
GsuI CTGGAG 2 cut(s) 639, 795
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 5 cut(s) 5, 568, 764, 1274, 1517
HapII CCGG 4 cut(s) 54, 190, 580, 1463
HhaI GCGC 4 cut(s) 161, 163, 186, 441
Hin6I GCGC 4 cut(s) 159, 161, 184, 439
HinP1I GCGC 4 cut(s) 159, 161, 184, 439
HinfI GANTC 9 cut(s) 88, 104, 213, 510, 808, 867, 1046, 1090, 1478
HpaII CCGG 4 cut(s) 54, 190, 580, 1463
HphI GGTGA 3 cut(s) 572, 716, 959
Hpy166II GTNNAC 2 cut(s) 682, 1388
Hpy188III TCNNGA 6 cut(s) 101, 125, 791, 1004, 1146, 1394
Hpy8I GTNNAC 2 cut(s) 682, 1388
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 74, 1130
HpyCH4III ACNGT 2 cut(s) 664, 1501
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 8 cut(s) 151, 382, 392, 436, 552, 651, 937, 1444
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 433, 716, 770, 1239
HpyF3I CTNAG 4 cut(s) 80, 357, 1029, 1243
HpySE526I ACGT 1 cut(s) 23
HspAI GCGC 4 cut(s) 159, 161, 184, 439
KpnI GGTACC 1 cut(s) 208
Ksp22I TGATCA 2 cut(s) 1000, 1015
KspI CCGCGG 1 cut(s) 203
Lsp1109I GCAGC 4 cut(s) 123, 448, 663, 949
LweI GCATC 2 cut(s) 613, 706
MaeI CTAG 4 cut(s) 125, 410, 594, 1146
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 3 cut(s) 493, 610, 722
MflI RGATCY 5 cut(s) 244, 394, 739, 1369, 1456
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 344
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 98, 222, 519, 802
MmeI TCCRAC 3 cut(s) 60, 201, 676
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 29, 522, 980, 1265, 1335
MslI CAYNNNNRTG 2 cut(s) 832, 1071
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 4 cut(s) 54, 190, 580, 1463
MspR9I CCNGG 5 cut(s) 311, 470, 580, 872, 1464
Mva1269I GAATGC 2 cut(s) 554, 1551
MvaI CCWGG 3 cut(s) 311, 470, 872
MvnI CGCG 2 cut(s) 161, 202
MwoI GCNNNNNNNGC 5 cut(s) 165, 433, 716, 770, 1239
NciI CCSGG 2 cut(s) 580, 1464
NcoI CCATGG 4 cut(s) 727, 1237, 1275, 1518
NdeI CATATG 2 cut(s) 316, 421
NlaIV GGNNCC 5 cut(s) 206, 246, 741, 1195, 1212
NmuCI GTSAC 2 cut(s) 610, 722
NspI RCATGY 1 cut(s) 1297
PaqCI CACCTGC 1 cut(s) 1207
PauI GCGCGC 1 cut(s) 159
PceI AGGCCT 1 cut(s) 568
PciI ACATGT 1 cut(s) 1293
PctI GAATGC 2 cut(s) 554, 1551
PfeI GAWTC 5 cut(s) 88, 867, 1046, 1090, 1478
PflMI CCANNNNNTGG 1 cut(s) 733
PkrI GCNGC 4 cut(s) 138, 438, 653, 939
PleI GAGTC 4 cut(s) 98, 221, 518, 802
PpsI GAGTC 4 cut(s) 98, 221, 518, 802
PpuMI RGGWCCY 1 cut(s) 1210
PscI ACATGT 1 cut(s) 1293
PshBI ATTAAT 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 1210
Psp6I CCWGG 3 cut(s) 309, 468, 870
PspGI CCWGG 3 cut(s) 309, 468, 870
PspN4I GGNNCC 5 cut(s) 206, 246, 741, 1195, 1212
PspPI GGNCC 3 cut(s) 590, 1194, 1210
PspPPI RGGWCCY 1 cut(s) 1210
PstI CTGCAG 1 cut(s) 438
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 5 cut(s) 244, 394, 739, 1369, 1456
PteI GCGCGC 1 cut(s) 159
RsaI GTAC 2 cut(s) 206, 368
RsaNI GTAC 2 cut(s) 205, 367
RseI CAYNNNNRTG 2 cut(s) 832, 1071
SacII CCGCGG 1 cut(s) 203
SaqAI TTAA 5 cut(s) 29, 522, 980, 1265, 1335
SatI GCNGC 4 cut(s) 137, 437, 652, 938
Sau96I GGNCC 3 cut(s) 590, 1194, 1210
SchI GAGTC 4 cut(s) 98, 222, 519, 802
ScrFI CCNGG 5 cut(s) 311, 470, 580, 872, 1464
SfaNI GCATC 2 cut(s) 613, 706
SfcI CTRYAG 2 cut(s) 434, 570
Sfr303I CCGCGG 1 cut(s) 203
SgrBI CCGCGG 1 cut(s) 203
SinI GGWCC 3 cut(s) 590, 1194, 1210
SmiMI CAYNNNNRTG 2 cut(s) 832, 1071
Sse9I AATT 1 cut(s) 344
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 6 cut(s) 113, 142, 200, 202, 275, 1214
SspMI CTAG 4 cut(s) 125, 410, 594, 1146
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 5 cut(s) 309, 468, 578, 870, 1462
StyI CCWWGG 6 cut(s) 74, 727, 1151, 1237, 1275, 1518
TaaI ACNGT 2 cut(s) 664, 1501
TaiI ACGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 790, 1134
TasI AATT 1 cut(s) 344
TfiI GAWTC 5 cut(s) 88, 867, 1046, 1090, 1478
Tru1I TTAA 5 cut(s) 29, 522, 980, 1265, 1335
Tru9I TTAA 5 cut(s) 29, 522, 980, 1265, 1335
TscAI CASTG 2 cut(s) 691, 1557
TseFI GTSAC 2 cut(s) 610, 722
TseI GCWGC 4 cut(s) 136, 436, 651, 937
Tsp45I GTSAC 2 cut(s) 610, 722
TspDTI ATGAA 8 cut(s) 555, 648, 770, 900, 979, 1131, 1416, 1466
TspGWI ACGGA 2 cut(s) 475, 652
TspRI CASTG 2 cut(s) 691, 1557
Van91I CCANNNNNTGG 1 cut(s) 733
VpaK11BI GGWCC 3 cut(s) 590, 1194, 1210
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 1 cut(s) 344
XbaI TCTAGA 2 cut(s) 124, 1145
XceI RCATGY 1 cut(s) 1297
XmiI GTMKAC 2 cut(s) 681, 1387
XspI CTAG 4 cut(s) 125, 410, 594, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.