Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Forward (+)

1698270 .. 1702659

Gene Structure 4390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGAAATTTAACTTTAACGAGACAGAGGATGCACCAGATTCACGACGATCTCCGACGCCCAAAGAGCCGGTTAGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAGATGAACCCGCCGTGTCGCAGCTGTTTCCGAGAAATTTCATGGCTTGGGACGGAGACTCGCGCGTATACTACTGGGATTCGAGACGATATCTCCTTCACCGATTATCTCTGCGCTTGGGTGAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTTCAGGTGACATTTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTTGCCGGCTCAGATGGGATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGATAGAAGACAATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTAGTGACAGTGCCATAACCTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCCTCGGATGCAGTTTTCAGGCTTTTCGATTTGTCTTCAGATACTGAGCTACCAGAGCAAGAATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGCTGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTATATTATTCACTGATGGTTCAATTTATATCTTATGCCCCGTTGTGCCATTTGGAAGTGTTTACAAATGGGAATCCGTAATGGAGATTTACAACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCGTTAGCAGTTAGCAACTCCAGTCTGGCTATTGAATGGTTGGAAGCTACATTTCCAGATTTGACTGAGCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCAGCCTTATGCTTTGCTTGACGCATCACTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGATGAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATTATATAATCTTGTTAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGATGCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATGAACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAAGTGAGCTTCCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCACCACCACTGTTAAGACTTGCAATGGTTGATTTGGCTCTCCCCAAAATGCGTGAAGGTGGCTCTCTTGTTACCTTGTTTGCTGACTCCCTTTTGCCAGAACGAATATACTCCCTTCACGACGGTGGCATTGATTCAACAGTCTTACACTCTCTTCCCTTCACAAGTCAGGCCAGTGGAAAAGATGAAGCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTATCTCCTTTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGGTATTCATGGATCGTTGCAGTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACTTGGGATCTCTTGCTTCCAATTCATGTCAGTACGGATAAGACAGTGTCTTCAAGCGCAATAGAGAAAAAAGAGCAAGAGAACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCGCCCCACGCTTTACCTAACCAGCGTTCAACTCCAGCCAATTCCGTAGAAGGCAGATCAATTCTGCTTGACTATGTCAAACTTTTCCATGAAAACTACATCGAATATGCACACAAGGTCCACTTTGAGCTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCTGAGGCAAATGAGAAAATATCAAAAGTTGAGAAAAACCAATCTTTTCTGGAGAAAAGGATTGACAAAGCAATTGAAAGACATGATTCTCTTGAACAATGCTTGCAACGTCTCCGTAGCTTGCCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAATCGGAGCTCGATCAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATCGAAACACTGAGAGCAAGAGTGAAGAAGTCAACTCAAAAATCTCACAAGGGCACAGTAGTCGCAGCTAGTCAGAAAAAGCAGTATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTCGCCAAACTATCCCTGATGAATAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCGCTGAAATCGCAAGAAAGCAGTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

810

Amino Acids

89.73

Weight (kDa)

5.71

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup88	PF10168	29 - 197	4.1e-16	Nuclear pore component
Nup88	PF10168	462 - 799	8.3e-09	Nuclear pore component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1290, 1766
AccB1I	GGYRCC	1 cut(s)	510
AccBSI	CCGCTC	1 cut(s)	1288
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	2 cut(s)	187, 189
AciI	CCGC	6 cut(s)	135, 273, 1286, 1557, 1975, 2171
AclWI	GGATC	3 cut(s)	358, 1622, 1677
AcsI	RAATTY	3 cut(s)	5, 160, 537
AcuI	CTGAAG	4 cut(s)	290, 564, 1967, 2315
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	5 cut(s)	360, 395, 1540, 1696, 2110
AfiI	CCNNNNNNNGG	2 cut(s)	286, 1574
AhlI	ACTAGT	1 cut(s)	470
AjiI	CACGTC	1 cut(s)	407
AjnI	CCWGG	4 cut(s)	628, 1115, 1146, 2104
AleI	CACNNNNGTG	1 cut(s)	1437
Alw21I	GWGCWC	2 cut(s)	1770, 2160
Alw26I	GTCTC	4 cut(s)	14, 174, 202, 2096
AlwI	GGATC	3 cut(s)	358, 1622, 1677
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	3 cut(s)	988, 1057, 1485
ApaI	GGGCCC	1 cut(s)	992
ApeKI	GCWGC	5 cut(s)	145, 616, 1924, 1927, 2267
ApoI	RAATTY	3 cut(s)	5, 160, 537
Asp700I	GAANNNNTTC	1 cut(s)	646
AspLEI	GCGC	6 cut(s)	189, 240, 1721, 1798, 2191, 2404
AspS9I	GGNCC	4 cut(s)	988, 989, 1778, 1912
AsuC2I	CCSGG	3 cut(s)	98, 621, 1061
AsuHPI	GGTGA	7 cut(s)	215, 257, 301, 322, 635, 935, 952
AvaII	GGWCC	2 cut(s)	1778, 1912
AxyI	CCTNAGG	1 cut(s)	1633
BaeGI	GKGCMC	2 cut(s)	992, 2258
BanI	GGYRCC	1 cut(s)	510
BanII	GRGCYC	3 cut(s)	992, 1770, 2160
BauI	CACGAG	1 cut(s)	1747
BbsI	GAAGAC	4 cut(s)	429, 570, 1187, 1704
Bbv12I	GWGCWC	2 cut(s)	1770, 2160
BbvCI	CCTCAGC	1 cut(s)	1983
BbvI	GCAGC	5 cut(s)	157, 628, 1911, 1939, 2279
BccI	CCATC	6 cut(s)	265, 344, 371, 722, 1525, 2210
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	4 cut(s)	2150, 2184, 2245, 2279
BciT130I	CCWGG	4 cut(s)	630, 1117, 1148, 2106
BcnI	CCSGG	3 cut(s)	98, 621, 1061
BcoDI	GTCTC	4 cut(s)	14, 174, 202, 2096
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	5 cut(s)	471, 639, 918, 1008, 2271
BfmI	CTRYAG	2 cut(s)	614, 1925
BfuAI	ACCTGC	2 cut(s)	1290, 1766
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	8 cut(s)	146, 273, 617, 1286, 1925, 1928, 1976, 2268
BlpI	GCTNAGC	1 cut(s)	948
BlsI	GCNGC	8 cut(s)	147, 274, 618, 1287, 1926, 1929, 1977, 2269
Bme1390I	CCNGG	7 cut(s)	98, 621, 630, 1061, 1117, 1148, 2106
Bme18I	GGWCC	2 cut(s)	1778, 1912
BmgBI	CACGTC	1 cut(s)	407
BmgT120I	GGNCC	4 cut(s)	988, 989, 1778, 1912
BmiI	GGNNCC	4 cut(s)	81, 512, 990, 1780
BmrFI	CCNGG	7 cut(s)	98, 621, 630, 1061, 1117, 1148, 2106
BmrI	ACTGGG	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	4 cut(s)	429, 570, 1187, 1704
BpmI	CTGGAG	5 cut(s)	71, 844, 1138, 1812, 2051
Bpu10I	CCTNAGC	1 cut(s)	1983
Bpu1102I	GCTNAGC	1 cut(s)	948
BpuMI	CCSGG	3 cut(s)	98, 621, 1061
Bsa29I	ATCGAT	1 cut(s)	1959
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	285, 546, 1146
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 2166, 2196
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 1574
Bse118I	RCCGGY	2 cut(s)	67, 368
Bse1I	ACTGG	6 cut(s)	203, 861, 981, 1265, 1488, 2145
Bse21I	CCTNAGG	1 cut(s)	1633
Bse3DI	GCAATG	2 cut(s)	1239, 1344
BseBI	CCWGG	4 cut(s)	630, 1117, 1148, 2106
BseCI	ATCGAT	1 cut(s)	1959
BseDI	CCNNGG	3 cut(s)	285, 546, 1146
BseGI	GGATG	7 cut(s)	34, 257, 556, 833, 1312, 2191, 2198
BseLI	CCNNNNNNNGG	2 cut(s)	286, 1574
BseMI	GCAATG	2 cut(s)	1239, 1344
BseMII	CTCAG	7 cut(s)	387, 579, 897, 962, 1647, 1974, 2204
BseNI	ACTGG	6 cut(s)	203, 861, 981, 1265, 1488, 2145
BseRI	GAGGAG	1 cut(s)	696
BseSI	GKGCMC	2 cut(s)	992, 2258
BseXI	GCAGC	5 cut(s)	157, 628, 1911, 1939, 2279
Bsh1236I	CGCG	2 cut(s)	187, 189
BshFI	GGCC	3 cut(s)	990, 1059, 1487
BshNI	GGYRCC	1 cut(s)	510
BshVI	ATCGAT	1 cut(s)	1959
BsiHKAI	GWGCWC	2 cut(s)	1770, 2160
BsiSI	CCGG	5 cut(s)	68, 98, 369, 621, 1060
BslFI	GGGAC	3 cut(s)	188, 263, 1764
BslI	CCNNNNNNNGG	2 cut(s)	286, 1574
BsmAI	GTCTC	4 cut(s)	14, 174, 202, 2096
BsmBI	CGTCTC	2 cut(s)	202, 2096
BsmFI	GGGAC	3 cut(s)	188, 263, 1764
BsmI	GAATGC	1 cut(s)	1646
BsnI	GGCC	3 cut(s)	990, 1059, 1487
Bsp120I	GGGCCC	1 cut(s)	988
Bsp1286I	GDGCHC	4 cut(s)	992, 1770, 2160, 2258
Bsp1720I	GCTNAGC	1 cut(s)	948
BspACI	CCGC	6 cut(s)	135, 273, 1286, 1557, 1975, 2171
BspANI	GGCC	3 cut(s)	990, 1059, 1487
BspCNI	CTCAG	7 cut(s)	386, 580, 898, 961, 1646, 1975, 2205
BspDI	ATCGAT	1 cut(s)	1959
BspFNI	CGCG	2 cut(s)	187, 189
BspLI	GGNNCC	4 cut(s)	81, 512, 990, 1780
BspMAI	CTGCAG	2 cut(s)	618, 1929
BspMI	ACCTGC	2 cut(s)	1290, 1766
BspPI	GGATC	3 cut(s)	358, 1622, 1677
BspT107I	GGYRCC	1 cut(s)	510
BsrBI	CCGCTC	1 cut(s)	1288
BsrDI	GCAATG	2 cut(s)	1239, 1344
BsrFI	RCCGGY	2 cut(s)	67, 368
BsrI	ACTGG	6 cut(s)	203, 861, 981, 1265, 1488, 2145
BssAI	RCCGGY	2 cut(s)	67, 368
BssECI	CCNNGG	3 cut(s)	285, 546, 1146
BssNAI	GTATAC	1 cut(s)	193
BssNI	GRCGYC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	1747
BssT1I	CCWWGG	1 cut(s)	285
Bst1107I	GTATAC	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	1747
Bst2UI	CCWGG	4 cut(s)	630, 1117, 1148, 2106
Bst4CI	ACNGT	9 cut(s)	482, 709, 1300, 1326, 1439, 1456, 1531, 1708, 2260
Bst6I	CTCTTC	3 cut(s)	117, 1473, 1943
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	4 cut(s)	370, 1980, 2084, 2102
BstDEI	CTNAG	8 cut(s)	373, 588, 906, 948, 1535, 1633, 1983, 2213
BstF5I	GGATG	7 cut(s)	34, 257, 556, 833, 1312, 2191, 2198
BstFNI	CGCG	2 cut(s)	187, 189
BstHHI	GCGC	6 cut(s)	189, 240, 1721, 1798, 2191, 2404
BstMAI	GTCTC	4 cut(s)	14, 174, 202, 2096
BstMWI	GCNNNNNNNGC	8 cut(s)	64, 598, 625, 977, 1121, 1758, 1802, 2410
BstNI	CCWGG	4 cut(s)	630, 1117, 1148, 2106
BstNSI	RCATGY	1 cut(s)	1545
BstSCI	CCNGG	7 cut(s)	96, 619, 628, 1059, 1115, 1146, 2104
BstSFI	CTRYAG	2 cut(s)	614, 1925
BstSLI	GKGCMC	2 cut(s)	992, 2258
BstUI	CGCG	2 cut(s)	187, 189
BstV1I	GCAGC	5 cut(s)	157, 628, 1911, 1939, 2279
BstV2I	GAAGAC	4 cut(s)	429, 570, 1187, 1704
BstX2I	RGATCY	2 cut(s)	635, 1669
BstYI	RGATCY	2 cut(s)	635, 1669
BstZ17I	GTATAC	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	1959
Bsu36I	CCTNAGG	1 cut(s)	1633
BsuRI	GGCC	3 cut(s)	990, 1059, 1487
BsuTUI	ATCGAT	1 cut(s)	1959
BtrI	CACGTC	1 cut(s)	407
BtsCI	GGATG	7 cut(s)	34, 257, 556, 833, 1312, 2191, 2198
BtsI	GCAGTG	1 cut(s)	1071
BveI	ACCTGC	2 cut(s)	1290, 1766
Cac8I	GCNNGC	4 cut(s)	370, 1980, 2084, 2102
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	6 cut(s)	189, 240, 1721, 1798, 2191, 2404
Cfr10I	RCCGGY	2 cut(s)	67, 368
Cfr13I	GGNCC	4 cut(s)	988, 989, 1778, 1912
ClaI	ATCGAT	1 cut(s)	1959
CseI	GACGC	2 cut(s)	64, 977
Csp6I	GTAC	5 cut(s)	359, 394, 1539, 1695, 2109
CspCI	CAANNNNNGTGG	2 cut(s)	488, 523
CviAII	CATG	9 cut(s)	166, 1201, 1542, 1611, 1688, 1883, 1934, 2063, 2428
CviQI	GTAC	5 cut(s)	359, 394, 1539, 1695, 2109
DdeI	CTNAG	8 cut(s)	373, 588, 906, 948, 1535, 1633, 1983, 2213
DraI	TTTAAA	1 cut(s)	2149
Eam1104I	CTCTTC	3 cut(s)	117, 1473, 1943
EarI	CTCTTC	3 cut(s)	117, 1473, 1943
Ecl136II	GAGCTC	2 cut(s)	1768, 2158
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	3 cut(s)	992, 1770, 2160
Eco32I	GATATC	2 cut(s)	215, 1176
Eco47I	GGWCC	2 cut(s)	1778, 1912
Eco53kI	GAGCTC	2 cut(s)	1768, 2158
Eco57I	CTGAAG	4 cut(s)	290, 564, 1967, 2315
Eco81I	CCTNAGG	1 cut(s)	1633
EcoICRI	GAGCTC	2 cut(s)	1768, 2158
EcoO109I	RGGNCCY	3 cut(s)	988, 989, 1778
EcoRI	GAATTC	1 cut(s)	537
EcoRII	CCWGG	4 cut(s)	628, 1115, 1146, 2104
EcoRV	GATATC	2 cut(s)	215, 1176
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	1646
EcoT38I	GRGCYC	3 cut(s)	992, 1770, 2160
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	2 cut(s)	202, 2096
FaeI	CATG	9 cut(s)	169, 1204, 1545, 1614, 1691, 1886, 1937, 2066, 2431
FalI	AAGNNNNNCTT	4 cut(s)	1901, 1933, 2285, 2317
FaqI	GGGAC	3 cut(s)	188, 263, 1764
FatI	CATG	9 cut(s)	165, 1200, 1541, 1610, 1687, 1882, 1933, 2062, 2427
FauI	CCCGC	2 cut(s)	142, 2164
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	8 cut(s)	146, 273, 617, 1286, 1925, 1928, 1976, 2268
FokI	GGATG	7 cut(s)	41, 244, 563, 820, 1299, 2185, 2198
FriOI	GRGCYC	3 cut(s)	992, 1770, 2160
Fsp4HI	GCNGC	8 cut(s)	146, 273, 617, 1286, 1925, 1928, 1976, 2268
FspBI	CTAG	5 cut(s)	471, 639, 918, 1008, 2271
GlaI	GCGC	6 cut(s)	188, 239, 1720, 1797, 2190, 2403
GluI	GCNGC	8 cut(s)	146, 273, 617, 1286, 1925, 1928, 1976, 2268
GsuI	CTGGAG	5 cut(s)	71, 844, 1138, 1812, 2051
HaeIII	GGCC	3 cut(s)	990, 1059, 1487
HapII	CCGG	5 cut(s)	68, 98, 369, 621, 1060
HgaI	GACGC	2 cut(s)	64, 977
HhaI	GCGC	6 cut(s)	189, 240, 1721, 1798, 2191, 2404
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	9 cut(s)	169, 1204, 1545, 1614, 1691, 1886, 1937, 2066, 2431
Hin6I	GCGC	6 cut(s)	187, 238, 1719, 1796, 2189, 2402
HinP1I	GCGC	6 cut(s)	187, 238, 1719, 1796, 2189, 2402
HincII	GTYRAC	1 cut(s)	2235
HindII	GTYRAC	1 cut(s)	2235
HpaII	CCGG	5 cut(s)	68, 98, 369, 621, 1060
HphI	GGTGA	7 cut(s)	215, 257, 301, 322, 635, 935, 952
Hpy166II	GTNNAC	8 cut(s)	193, 248, 775, 1525, 1915, 2111, 2235, 2337
Hpy8I	GTNNAC	8 cut(s)	193, 248, 775, 1525, 1915, 2111, 2235, 2337
Hpy99I	CGWCG	4 cut(s)	48, 58, 1019, 1439
HpyAV	CCTTC	7 cut(s)	126, 230, 314, 1364, 1439, 1483, 1838
HpyCH4III	ACNGT	9 cut(s)	482, 709, 1300, 1326, 1439, 1456, 1531, 1708, 2260
HpyCH4IV	ACGT	2 cut(s)	406, 2089
HpyF10VI	GCNNNNNNNGC	8 cut(s)	64, 598, 625, 977, 1121, 1758, 1802, 2410
HpyF3I	CTNAG	8 cut(s)	373, 588, 906, 948, 1535, 1633, 1983, 2213
HpySE526I	ACGT	2 cut(s)	406, 2089
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	9 cut(s)	169, 1204, 1545, 1614, 1691, 1886, 1937, 2066, 2431
HspAI	GCGC	6 cut(s)	187, 238, 1719, 1796, 2189, 2402
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
LmnI	GCTCC	4 cut(s)	1765, 1773, 1942, 2155
Lsp1109I	GCAGC	5 cut(s)	157, 628, 1911, 1939, 2279
MaeI	CTAG	5 cut(s)	471, 639, 918, 1008, 2271
MaeII	ACGT	2 cut(s)	406, 2089
MaeIII	GTNAC	7 cut(s)	310, 476, 521, 1108, 1181, 1384, 2322
MbiI	CCGCTC	1 cut(s)	1288
MfeI	CAATTG	1 cut(s)	2052
MflI	RGATCY	2 cut(s)	635, 1669
MhlI	GDGCHC	4 cut(s)	992, 1770, 2160, 2258
MlyI	GAGTC	4 cut(s)	176, 1078, 1253, 1394
MmeI	TCCRAC	3 cut(s)	77, 861, 1572
Mph1103I	ATGCAT	1 cut(s)	1646
MroNI	GCCGGC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	646
MseI	TTAA	6 cut(s)	9, 15, 828, 1328, 2148, 2303
MslI	CAYNNNNRTG	1 cut(s)	1437
MspA1I	CMGCKG	4 cut(s)	148, 356, 1559, 1975
MspI	CCGG	5 cut(s)	68, 98, 369, 621, 1060
MspR9I	CCNGG	7 cut(s)	98, 621, 630, 1061, 1117, 1148, 2106
MunI	CAATTG	1 cut(s)	2052
Mva1269I	GAATGC	1 cut(s)	1646
MvaI	CCWGG	4 cut(s)	630, 1117, 1148, 2106
MvnI	CGCG	2 cut(s)	187, 189
MwoI	GCNNNNNNNGC	8 cut(s)	64, 598, 625, 977, 1121, 1758, 1802, 2410
NaeI	GCCGGC	1 cut(s)	370
NciI	CCSGG	3 cut(s)	98, 621, 1061
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	9 cut(s)	169, 1204, 1545, 1614, 1691, 1886, 1937, 2066, 2431
NlaIV	GGNNCC	4 cut(s)	81, 512, 990, 1780
NmuCI	GTSAC	4 cut(s)	310, 476, 521, 2322
NsiI	ATGCAT	1 cut(s)	1646
NspI	RCATGY	1 cut(s)	1545
OliI	CACNNNNGTG	1 cut(s)	1437
PctI	GAATGC	1 cut(s)	1646
PdiI	GCCGGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	646
PflFI	GACNNNGTC	3 cut(s)	428, 1708, 1868
PkrI	GCNGC	8 cut(s)	147, 274, 618, 1287, 1926, 1929, 1977, 2269
PleI	GAGTC	4 cut(s)	176, 1077, 1252, 1394
PpsI	GAGTC	4 cut(s)	176, 1077, 1252, 1394
PpuMI	RGGWCCY	1 cut(s)	1778
Psp124BI	GAGCTC	2 cut(s)	1770, 2160
Psp5II	RGGWCCY	1 cut(s)	1778
Psp6I	CCWGG	4 cut(s)	628, 1115, 1146, 2104
PspGI	CCWGG	4 cut(s)	628, 1115, 1146, 2104
PspN4I	GGNNCC	4 cut(s)	81, 512, 990, 1780
PspOMI	GGGCCC	1 cut(s)	988
PspPI	GGNCC	4 cut(s)	988, 989, 1778, 1912
PspPPI	RGGWCCY	1 cut(s)	1778
PstI	CTGCAG	2 cut(s)	618, 1929
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	635, 1669
PsyI	GACNNNGTC	3 cut(s)	428, 1708, 1868
PvuII	CAGCTG	2 cut(s)	148, 356
RsaI	GTAC	5 cut(s)	360, 395, 1540, 1696, 2110
RsaNI	GTAC	5 cut(s)	359, 394, 1539, 1695, 2109
RseI	CAYNNNNRTG	1 cut(s)	1437
SacI	GAGCTC	2 cut(s)	1770, 2160
SaqAI	TTAA	6 cut(s)	9, 15, 828, 1328, 2148, 2303
SatI	GCNGC	8 cut(s)	146, 273, 617, 1286, 1925, 1928, 1976, 2268
Sau96I	GGNCC	4 cut(s)	988, 989, 1778, 1912
SchI	GAGTC	4 cut(s)	176, 1078, 1253, 1394
ScrFI	CCNGG	7 cut(s)	98, 621, 630, 1061, 1117, 1148, 2106
SduI	GDGCHC	4 cut(s)	992, 1770, 2160, 2258
SfcI	CTRYAG	2 cut(s)	614, 1925
SinI	GGWCC	2 cut(s)	1778, 1912
SmiMI	CAYNNNNRTG	1 cut(s)	1437
SpeI	ACTAGT	1 cut(s)	470
SsiI	CCGC	6 cut(s)	135, 273, 1286, 1557, 1975, 2171
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	5 cut(s)	471, 639, 918, 1008, 2271
SstI	GAGCTC	2 cut(s)	1770, 2160
StyD4I	CCNGG	7 cut(s)	96, 619, 628, 1059, 1115, 1146, 2104
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	9 cut(s)	482, 709, 1300, 1326, 1439, 1456, 1531, 1708, 2260
TaiI	ACGT	2 cut(s)	409, 2092
TaqI	TCGA	8 cut(s)	206, 570, 1100, 1290, 1896, 1959, 2160, 2205
TatI	WGTACW	2 cut(s)	358, 1538
TauI	GCSGC	3 cut(s)	275, 1288, 1978
Tru1I	TTAA	6 cut(s)	9, 15, 828, 1328, 2148, 2303
Tru9I	TTAA	6 cut(s)	9, 15, 828, 1328, 2148, 2303
TseFI	GTSAC	4 cut(s)	310, 476, 521, 2322
TseI	GCWGC	5 cut(s)	145, 616, 1924, 1927, 2267
Tsp45I	GTSAC	4 cut(s)	310, 476, 521, 2322
TspGWI	ACGGA	7 cut(s)	192, 253, 778, 1032, 1712, 1828, 2084
Tth111I	GACNNNGTC	3 cut(s)	428, 1708, 1868
VpaK11BI	GGWCC	2 cut(s)	1778, 1912
XapI	RAATTY	3 cut(s)	5, 160, 537
XbaI	TCTAGA	1 cut(s)	638
XceI	RCATGY	1 cut(s)	1545
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	646
XspI	CTAG	5 cut(s)	471, 639, 918, 1008, 2271
Zsp2I	ATGCAT	1 cut(s)	1646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.