Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Reverse (-)

8236911 .. 8243412

Gene Structure 6502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGAGGTTCAACTTCGACTTGGAGGAAACTAAACCGGAGCCGAGCCGGTCCGCCACCCCCAAAGACGAAGTCGAATGGGTCCCACTCCACCACCATCCGGTCTTCACCTCCACGACCGCCCCAGCCCACCAGCCCACTGACGATTCTTCGCCGCTCAGAAACCTCTTAGCCTGGGACGGAGCCTCTCGCCTTTACTTCTGGGACTCCGACGACCTCTGCCTTCACCGGATCTCCGTCCGCCTCGGCGAGCCTGAGCCGACCTCCGTCTTCGCCGCTTCGCCCTCCAAGATACTGAAACCAGATGTGAAGCTGAACTTTGCTGTTAACAAAGTCTCCATCAATAGAAACGGGACGGCGATGCTCCTTTATGGTTCCGATGGTCTGTGCATTATGTATCTTTACGGGCGTACTTCGTCCAGAGATGGTACCACAATTTGCAGGACTGTTACTGTTGGTTCACAAATATACTTGAGTGGAACCAATGTCATACGGATACTGCAAGTTTCATGGCACCCTTGCAGTGATACTCATCTGGGAATTCTTTCTTCTGATTCAGTTTTCAGATTATTTCATTTGTCTTCAGATCTTATTCAACCAGAGCAGGCGTATTATCTACAGCCTGTGCAACCAGGTAGATCCAGGAATGCCACATCAATTTGCCCAGTGGACTTTTCATTTGGTGGTGATCACTTGTGGGACTGTTTTAGTGTTTTCATTTTGTTCAGTGATGGTTCAATTTACATCCTTTGTCCAATTGTTCCATTTGGAAGTGTCTATAAATGGGAATCGATTGTAGATATATATAATGATGCTCAGACATTTGGCCTGAAGTCGCCCAACTCAACGGCTGTTAGTAATTCAAATCTGGCTATTTCTTGGTTGGAAGCAACATTTCCAGAAATTGCAGGGCAAACAACAGATGGAGCAGATCTATCTGTAATAAGAGCTCGTCCTTATGCTTTATTTGATGCATCACTCTCACTGCAGGGACCTTTGAGGAAAGTATCTCGTGGTGAGGATGAAGCGGATTCAGCATTTCGAGGTAAAGAATGTGAAGGTCGAGCGGTTAGCTTTCTTTATAATTTAGTCAGCAAAGATTCAATTCTTGTGACTGCTTGGAGTGGTGGGCAACTGCAAATAGATGCTCTGGCTGATGAAATCCAACCGGTCTGGAATGTTGGTTGTCCTCCTCGCCTTCGTGTTGATTCCCACGACAATATTCATGGTCTTGCAATGATCTGTGAGTCAACCCCAGATAAGCTTTCAACTTACTCTTTGGTTGGGCCATCCTCCCCTCTGTTGAGACTGGCTATTGTGGATCTGGCTCTGCCTAAGAAAGCAGGAAGTGATTCGCTTGTTATGATGTTTATTGATCCCCTCATGCTGGAAAGAATATACACCCTTCATGATGGAGGGATAGATTCAATAGTGTTGCATTATCTCCCATTTACAAGTCAGAACAGTGGCAAGAATGAGACCATGAGAACTCCTTCAGTGCATCCTGTCCTCAGTACTTGCCAGGGAGAATTCTCCTCACACTCTCCACTCTCTGGTTTTGTGTCATTATCAGATTCATTTGGGTATTCATGGATAGTGGCAGTCACTGCTTCTCAAGAATGTGTTGTGCTAGAGATGAAAACCTTAAACCTGTTGCTTCCTCTTCATGTTGATACGGAGAAAAAATCCATTCTTCCGGAAGAGCCAAAAGAGAAAGATAAACCAGATATTATCATAAGCAAAGAACTCCTAGGTGGACCTAAGGTGGTTCTTGTTCCTCAGACATCACCAAATTTGCGTTCTGTTTCTGCTGATTCAATTGAAGGTCGATCAATGCTTCATGAATACTTCAAGCTTTTCCATGAAAATTATGTGGAGTATGCACACAAGGTTTACTTTGAACTCAAGCATCATGGGCCGCACTTGAAGAGGATAATCAATGACCAACATGGTCGTTTAGGTGGGGCAAAGCAGAGGCTTTTGCAAGTTGAGGAAAAGTACTCGGACTTAGAACACCGCATTAATGATGCAGTGCAGATGCAGAATCATCTGGAGGAGCGCCTAAAACGCTTGCGGAGCTTACCCGGGGTTCATAAGAAACCACTTTCCACAGCTGAGCGGGACTTCAAATCTCAGCTCGACCAGTTTTCCGGGGTTGAGTTGGATGCATTATGCTCTACTGTTAATGCGTTAACTGCAAGGATGAAAAGACACGGACAATCACCTAAGGCCAATGTATCAAACCAAAAGAAGCTGGTATCAAGGAGGAAGGATCCTGTGCAAGAGTCACAAATCTCCCAGTTGAAATCGTGCCTAGAGAAACTGTCACTGGTCAATAGTGAGAATTCGAAAAAGGTTAAGATTGTGGAATCTGCATTAAGAAGTCAAGAAAGCAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

799

Amino Acids

88.88

Weight (kDa)

6.33

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup88	PF10168	29 - 227	5.6e-18	Nuclear pore component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	425, 510
AccB7I	CCANNNNNTGG	1 cut(s)	1550
AccBSI	CCGCTC	3 cut(s)	154, 1064, 2116
AccIII	TCCGGA	1 cut(s)	1693
AclWI	GGATC	6 cut(s)	236, 630, 1326, 1367, 2264, 2277
AcsI	RAATTY	4 cut(s)	537, 1526, 1789, 2341
AcuI	CTGAAG	3 cut(s)	564, 848, 1476
AfaI	GTAC	4 cut(s)	409, 427, 1513, 1997
AfiI	CCNNNNNNNGG	3 cut(s)	97, 1384, 1550
AgeI	ACCGGT	1 cut(s)	1165
AjnI	CCWGG	4 cut(s)	170, 628, 638, 1518
AjuI	GAANNNNNNNTTGG	2 cut(s)	1780, 1812
AluBI	AGCT	9 cut(s)	310, 947, 1071, 1261, 1852, 2076, 2111, 2134, 2251
AluI	AGCT	9 cut(s)	310, 947, 1071, 1261, 1852, 2076, 2111, 2134, 2251
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	3 cut(s)	337, 1297, 1469
AlwI	GGATC	6 cut(s)	236, 630, 1326, 1367, 2264, 2277
AlwNI	CAGNNNCTG	1 cut(s)	1604
Ama87I	CYCGRG	1 cut(s)	2081
Aor13HI	TCCGGA	1 cut(s)	1693
AoxI	GGCC	4 cut(s)	823, 1283, 1913, 2226
ApeKI	GCWGC	1 cut(s)	2391
ApoI	RAATTY	4 cut(s)	537, 1526, 1789, 2341
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 659, 691
AseI	ATTAAT	1 cut(s)	2019
AsiGI	ACCGGT	1 cut(s)	1165
Asp700I	GAANNNNTTC	3 cut(s)	541, 1348, 1489
Asp718I	GGTACC	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	1747
AspLEI	GCGC	1 cut(s)	2058
AspS9I	GGNCC	6 cut(s)	48, 79, 989, 1283, 1754, 1913
AsuC2I	CCSGG	3 cut(s)	2082, 2083, 2149
AsuHPI	GGTGA	6 cut(s)	97, 215, 695, 1025, 1776, 2211
AsuII	TTCGAA	1 cut(s)	2345
AvaI	CYCGRG	1 cut(s)	2081
AvaII	GGWCC	4 cut(s)	48, 79, 989, 1754
AvrII	CCTAGG	1 cut(s)	1747
AxyI	CCTNAGG	2 cut(s)	1758, 2223
BamHI	GGATCC	1 cut(s)	2269
BanI	GGYRCC	2 cut(s)	425, 510
BanII	GRGCYC	1 cut(s)	949
BauI	CACGAG	1 cut(s)	1008
BbsI	GAAGAC	3 cut(s)	94, 259, 570
Bbv12I	GWGCWC	1 cut(s)	949
BccI	CCATC	8 cut(s)	102, 344, 371, 416, 722, 914, 1294, 1403
BceAI	ACGGC	2 cut(s)	369, 861
BciT130I	CCWGG	4 cut(s)	172, 630, 640, 1520
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	3 cut(s)	2082, 2083, 2149
BcoDI	GTCTC	3 cut(s)	337, 1297, 1469
BfaI	CTAG	3 cut(s)	1628, 1748, 2312
BfmI	CTRYAG	2 cut(s)	614, 983
BfoI	RGCGCY	1 cut(s)	2059
BfuI	GTATCC	1 cut(s)	486
BglII	AGATCT	2 cut(s)	583, 928
BisI	GCNGC	4 cut(s)	152, 273, 1916, 2392
BlnI	CCTAGG	1 cut(s)	1747
BlpI	GCTNAGC	1 cut(s)	2112
BlsI	GCNGC	4 cut(s)	153, 274, 1917, 2393
BmcAI	AGTACT	2 cut(s)	1513, 1997
Bme1390I	CCNGG	7 cut(s)	172, 630, 640, 1520, 2082, 2083, 2149
Bme18I	GGWCC	4 cut(s)	48, 79, 989, 1754
BmeT110I	CYCGRG	1 cut(s)	2081
BmgT120I	GGNCC	6 cut(s)	48, 79, 989, 1283, 1754, 1913
BmrFI	CCNGG	7 cut(s)	172, 630, 640, 1520, 2082, 2083, 2149
BmrI	ACTGGG	2 cut(s)	656, 2290
BmuI	ACTGGG	2 cut(s)	656, 2290
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	3 cut(s)	94, 259, 570
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	2069
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	2112
Bpu14I	TTCGAA	1 cut(s)	2345
BpuEI	CTTGAG	3 cut(s)	490, 1596, 1886
BpuMI	CCSGG	3 cut(s)	2082, 2083, 2149
Bsa29I	ATCGAT	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	1469
BsaJI	CCNNGG	7 cut(s)	171, 241, 1519, 1747, 2081, 2082, 2148
BsaWI	WCCGGW	5 cut(s)	34, 97, 225, 1165, 1693
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 317, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 1384, 1550
Bse118I	RCCGGY	2 cut(s)	45, 1165
Bse1I	ACTGG	5 cut(s)	662, 1311, 2140, 2296, 2331
Bse21I	CCTNAGG	2 cut(s)	1758, 2223
Bse3DI	GCAATG	1 cut(s)	1239
Bse8I	GATNNNNATC	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	1693
BseBI	CCWGG	4 cut(s)	172, 630, 640, 1520
BseCI	ATCGAT	1 cut(s)	788
BseDI	CCNNGG	7 cut(s)	171, 241, 1519, 1747, 2081, 2082, 2148
BseGI	GGATG	7 cut(s)	94, 741, 1024, 1286, 1498, 2167, 2205
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	97, 1384, 1550
BseMI	GCAATG	1 cut(s)	1239
BseMII	CTCAG	7 cut(s)	169, 243, 827, 1522, 1790, 2103, 2144
BseNI	ACTGG	5 cut(s)	662, 1311, 2140, 2296, 2331
BseRI	GAGGAG	3 cut(s)	1179, 1522, 2066
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	2051
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	825, 1285, 1915, 2228
BshNI	GGYRCC	2 cut(s)	425, 510
BshTI	ACCGGT	1 cut(s)	1165
BshVI	ATCGAT	1 cut(s)	788
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	949
BsiHKCI	CYCGRG	1 cut(s)	2081
BsiSI	CCGG	8 cut(s)	35, 46, 98, 226, 1166, 1694, 2082, 2148
BslFI	GGGAC	7 cut(s)	65, 188, 215, 364, 710, 1002, 2132
BslI	CCNNNNNNNGG	3 cut(s)	97, 1384, 1550
BsmAI	GTCTC	3 cut(s)	337, 1297, 1469
BsmFI	GGGAC	7 cut(s)	65, 188, 215, 364, 710, 1002, 2132
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	4 cut(s)	825, 1285, 1915, 2228
Bso31I	GGTCTC	1 cut(s)	1469
BsoBI	CYCGRG	1 cut(s)	2081
Bsp119I	TTCGAA	1 cut(s)	2345
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp13I	TCCGGA	1 cut(s)	1693
Bsp1720I	GCTNAGC	1 cut(s)	2112
BspANI	GGCC	4 cut(s)	825, 1285, 1915, 2228
BspCNI	CTCAG	7 cut(s)	168, 244, 826, 1521, 1789, 2104, 2143
BspDI	ATCGAT	1 cut(s)	788
BspEI	TCCGGA	1 cut(s)	1693
BspHI	TCATGA	2 cut(s)	1405, 1837
BspMAI	CTGCAG	1 cut(s)	987
BspPI	GGATC	6 cut(s)	236, 630, 1326, 1367, 2264, 2277
BspQI	GCTCTTC	1 cut(s)	1692
BspT104I	TTCGAA	1 cut(s)	2345
BspT107I	GGYRCC	2 cut(s)	425, 510
BspTNI	GGTCTC	1 cut(s)	1469
BsrBI	CCGCTC	3 cut(s)	154, 1064, 2116
BsrDI	GCAATG	1 cut(s)	1239
BsrFI	RCCGGY	2 cut(s)	45, 1165
BsrI	ACTGG	5 cut(s)	662, 1311, 2140, 2296, 2331
BssAI	RCCGGY	2 cut(s)	45, 1165
BssECI	CCNNGG	7 cut(s)	171, 241, 1519, 1747, 2081, 2082, 2148
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	1 cut(s)	1747
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	4 cut(s)	172, 630, 640, 1520
Bst4CI	ACNGT	6 cut(s)	445, 451, 701, 1463, 2179, 2322
Bst6I	CTCTTC	3 cut(s)	1665, 1692, 1919
BstAPI	GCANNNNNTGC	1 cut(s)	1604
BstBI	TTCGAA	1 cut(s)	2345
BstC8I	GCNNGC	3 cut(s)	248, 603, 2069
BstF5I	GGATG	7 cut(s)	94, 741, 1024, 1286, 1498, 2167, 2205
BstH2I	RGCGCY	1 cut(s)	2059
BstHHI	GCGC	1 cut(s)	2058
BstMAI	GTCTC	3 cut(s)	337, 1297, 1469
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	6 cut(s)	1031, 1604, 1912, 2064, 2073, 2192
BstNI	CCWGG	4 cut(s)	172, 630, 640, 1520
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	7 cut(s)	170, 628, 638, 1518, 2080, 2081, 2147
BstSFI	CTRYAG	2 cut(s)	614, 983
BstV2I	GAAGAC	3 cut(s)	94, 259, 570
BstX2I	RGATCY	6 cut(s)	228, 583, 635, 928, 1318, 2269
BstYI	RGATCY	6 cut(s)	228, 583, 635, 928, 1318, 2269
Bsu15I	ATCGAT	1 cut(s)	788
Bsu36I	CCTNAGG	2 cut(s)	1758, 2223
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	4 cut(s)	825, 1285, 1915, 2228
BsuTUI	ATCGAT	1 cut(s)	788
BtgZI	GCGATG	1 cut(s)	371
BtsCI	GGATG	7 cut(s)	94, 741, 1024, 1286, 1498, 2167, 2205
BtsI	GCAGTG	4 cut(s)	526, 980, 1602, 2034
Cac8I	GCNNGC	3 cut(s)	248, 603, 2069
CaiI	CAGNNNCTG	1 cut(s)	1604
CciI	TCATGA	2 cut(s)	1405, 1837
CfoI	GCGC	1 cut(s)	2058
Cfr10I	RCCGGY	2 cut(s)	45, 1165
Cfr13I	GGNCC	6 cut(s)	48, 79, 989, 1283, 1754, 1913
Cfr9I	CCCGGG	1 cut(s)	2081
ClaI	ATCGAT	1 cut(s)	788
CpoI	CGGWCCG	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	4 cut(s)	408, 426, 1512, 1996
CspAI	ACCGGT	1 cut(s)	1165
CspI	CGGWCCG	1 cut(s)	48
CviQI	GTAC	4 cut(s)	408, 426, 1512, 1996
Eam1104I	CTCTTC	3 cut(s)	1665, 1692, 1919
EarI	CTCTTC	3 cut(s)	1665, 1692, 1919
EciI	GGCGGA	2 cut(s)	40, 227
Ecl136II	GAGCTC	1 cut(s)	947
Eco130I	CCWWGG	1 cut(s)	1747
Eco24I	GRGCYC	1 cut(s)	949
Eco31I	GGTCTC	1 cut(s)	1469
Eco47I	GGWCC	4 cut(s)	48, 79, 989, 1754
Eco53kI	GAGCTC	1 cut(s)	947
Eco57I	CTGAAG	3 cut(s)	564, 848, 1476
Eco81I	CCTNAGG	2 cut(s)	1758, 2223
Eco88I	CYCGRG	1 cut(s)	2081
EcoICRI	GAGCTC	1 cut(s)	947
EcoO109I	RGGNCCY	2 cut(s)	79, 989
EcoRI	GAATTC	3 cut(s)	537, 1526, 2341
EcoRII	CCWGG	4 cut(s)	170, 628, 638, 1518
EcoT14I	CCWWGG	1 cut(s)	1747
EcoT22I	ATGCAT	2 cut(s)	973, 2167
EcoT38I	GRGCYC	1 cut(s)	949
ErhI	CCWWGG	1 cut(s)	1747
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 1877, 1909
FaqI	GGGAC	7 cut(s)	65, 188, 215, 364, 710, 1002, 2132
FauI	CCCGC	1 cut(s)	2109
FauNDI	CATATG	1 cut(s)	2396
FbaI	TGATCA	1 cut(s)	685
Fnu4HI	GCNGC	4 cut(s)	152, 273, 1916, 2392
FokI	GGATG	7 cut(s)	81, 728, 1031, 1273, 1485, 2174, 2212
FriOI	GRGCYC	1 cut(s)	949
Fsp4HI	GCNGC	4 cut(s)	152, 273, 1916, 2392
FspBI	CTAG	3 cut(s)	1628, 1748, 2312
GlaI	GCGC	1 cut(s)	2057
GluI	GCNGC	4 cut(s)	152, 273, 1916, 2392
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	2069
HaeII	RGCGCY	1 cut(s)	2059
HaeIII	GGCC	4 cut(s)	825, 1285, 1915, 2228
HapII	CCGG	8 cut(s)	35, 46, 98, 226, 1166, 1694, 2082, 2148
HhaI	GCGC	1 cut(s)	2058
Hin6I	GCGC	1 cut(s)	2056
HinP1I	GCGC	1 cut(s)	2056
HincII	GTYRAC	3 cut(s)	325, 1248, 2190
HindII	GTYRAC	3 cut(s)	325, 1248, 2190
HindIII	AAGCTT	2 cut(s)	1259, 1850
HpaI	GTTAAC	2 cut(s)	325, 2190
HpaII	CCGG	8 cut(s)	35, 46, 98, 226, 1166, 1694, 2082, 2148
HphI	GGTGA	6 cut(s)	97, 215, 695, 1025, 1776, 2211
Hpy166II	GTNNAC	7 cut(s)	325, 458, 667, 1248, 1754, 1891, 2190
Hpy188III	TCNNGA	9 cut(s)	417, 896, 1171, 1406, 1613, 1694, 1838, 2048, 2384
Hpy8I	GTNNAC	7 cut(s)	325, 458, 667, 1248, 1754, 1891, 2190
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	7 cut(s)	230, 1049, 1205, 1412, 1500, 1814, 2260
HpyCH4III	ACNGT	6 cut(s)	445, 451, 701, 1463, 2179, 2322
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1031, 1604, 1912, 2064, 2073, 2192
HspAI	GCGC	1 cut(s)	2056
KflI	GGGWCCC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	1693
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	685
KspAI	GTTAAC	2 cut(s)	325, 2190
LguI	GCTCTTC	1 cut(s)	1692
LmnI	GCTCC	6 cut(s)	37, 179, 366, 923, 2053, 2073
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	3 cut(s)	1628, 1748, 2312
MaeIII	GTNAC	5 cut(s)	445, 1108, 1600, 2283, 2322
MbiI	CCGCTC	3 cut(s)	154, 1064, 2116
MboII	GAAGA	9 cut(s)	94, 138, 259, 537, 570, 1652, 1682, 1709, 1936
MfeI	CAATTG	2 cut(s)	753, 1815
MflI	RGATCY	6 cut(s)	228, 583, 635, 928, 1318, 2269
MhlI	GDGCHC	1 cut(s)	949
MlyI	GAGTC	3 cut(s)	197, 1253, 2291
MmeI	TCCRAC	4 cut(s)	231, 861, 1186, 2139
Mph1103I	ATGCAT	2 cut(s)	973, 2167
MroI	TCCGGA	1 cut(s)	1693
MroXI	GAANNNNTTC	3 cut(s)	541, 1348, 1489
MseI	TTAA	7 cut(s)	324, 1643, 2019, 2181, 2189, 2355, 2375
MspA1I	CMGCKG	1 cut(s)	2111
MspI	CCGG	8 cut(s)	35, 46, 98, 226, 1166, 1694, 2082, 2148
MspR9I	CCNGG	7 cut(s)	172, 630, 640, 1520, 2082, 2083, 2149
MunI	CAATTG	2 cut(s)	753, 1815
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	4 cut(s)	172, 630, 640, 1520
MwoI	GCNNNNNNNGC	6 cut(s)	1031, 1604, 1912, 2064, 2073, 2192
NciI	CCSGG	3 cut(s)	2082, 2083, 2149
NdeI	CATATG	1 cut(s)	2396
NmeAIII	GCCGAG	2 cut(s)	66, 222
NmuCI	GTSAC	4 cut(s)	1108, 1600, 2283, 2322
NsiI	ATGCAT	2 cut(s)	973, 2167
NspV	TTCGAA	1 cut(s)	2345
PagI	TCATGA	2 cut(s)	1405, 1837
PciSI	GCTCTTC	1 cut(s)	1692
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	3 cut(s)	541, 1348, 1489
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	1550
PfoI	TCCNGGA	1 cut(s)	638
PinAI	ACCGGT	1 cut(s)	1165
PkrI	GCNGC	4 cut(s)	153, 274, 1917, 2393
PleI	GAGTC	3 cut(s)	197, 1252, 2290
PpsI	GAGTC	3 cut(s)	197, 1252, 2290
PpuMI	RGGWCCY	2 cut(s)	79, 989
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	2019
PsiI	TTATAA	1 cut(s)	1080
Psp124BI	GAGCTC	1 cut(s)	949
Psp5II	RGGWCCY	2 cut(s)	79, 989
Psp6I	CCWGG	4 cut(s)	170, 628, 638, 1518
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	4 cut(s)	170, 628, 638, 1518
PspPI	GGNCC	6 cut(s)	48, 79, 989, 1283, 1754, 1913
PspPPI	RGGWCCY	2 cut(s)	79, 989
PstI	CTGCAG	1 cut(s)	987
PstNI	CAGNNNCTG	1 cut(s)	1604
PsuI	RGATCY	6 cut(s)	228, 583, 635, 928, 1318, 2269
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	2111
RsaI	GTAC	4 cut(s)	409, 427, 1513, 1997
RsaNI	GTAC	4 cut(s)	408, 426, 1512, 1996
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	949
SapI	GCTCTTC	1 cut(s)	1692
SaqAI	TTAA	7 cut(s)	324, 1643, 2019, 2181, 2189, 2355, 2375
SatI	GCNGC	4 cut(s)	152, 273, 1916, 2392
Sau96I	GGNCC	6 cut(s)	48, 79, 989, 1283, 1754, 1913
ScaI	AGTACT	2 cut(s)	1513, 1997
SchI	GAGTC	3 cut(s)	197, 1253, 2291
ScrFI	CCNGG	7 cut(s)	172, 630, 640, 1520, 2082, 2083, 2149
SduI	GDGCHC	1 cut(s)	949
SexAI	ACCWGGT	1 cut(s)	628
SfcI	CTRYAG	2 cut(s)	614, 983
SfuI	TTCGAA	1 cut(s)	2345
SinI	GGWCC	4 cut(s)	48, 79, 989, 1754
SmaI	CCCGGG	1 cut(s)	2083
SmlI	CTYRAG	3 cut(s)	469, 1611, 1901
SmoI	CTYRAG	3 cut(s)	469, 1611, 1901
SspI	AATATT	1 cut(s)	1219
SspMI	CTAG	3 cut(s)	1628, 1748, 2312
SstI	GAGCTC	1 cut(s)	949
StyD4I	CCNGG	7 cut(s)	170, 628, 638, 1518, 2080, 2081, 2147
StyI	CCWWGG	1 cut(s)	1747
TaaI	ACNGT	6 cut(s)	445, 451, 701, 1463, 2179, 2322
TaqI	TCGA	8 cut(s)	15, 72, 788, 1039, 1060, 1825, 2136, 2345
TatI	WGTACW	2 cut(s)	1511, 1995
TauI	GCSGC	3 cut(s)	154, 275, 1918
Tru1I	TTAA	7 cut(s)	324, 1643, 2019, 2181, 2189, 2355, 2375
Tru9I	TTAA	7 cut(s)	324, 1643, 2019, 2181, 2189, 2355, 2375
TseFI	GTSAC	4 cut(s)	1108, 1600, 2283, 2322
TseI	GCWGC	1 cut(s)	2391
Tsp45I	GTSAC	4 cut(s)	1108, 1600, 2283, 2322
TspGWI	ACGGA	6 cut(s)	192, 223, 253, 505, 1688, 2226
TspMI	CCCGGG	1 cut(s)	2081
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	1550
VpaK11BI	GGWCC	4 cut(s)	48, 79, 989, 1754
VspI	ATTAAT	1 cut(s)	2019
XapI	RAATTY	4 cut(s)	537, 1526, 1789, 2341
XmaI	CCCGGG	1 cut(s)	2081
XmaJI	CCTAGG	1 cut(s)	1747
XmnI	GAANNNNTTC	3 cut(s)	541, 1348, 1489
XspI	CTAG	3 cut(s)	1628, 1748, 2312
ZrmI	AGTACT	2 cut(s)	1513, 1997
Zsp2I	ATGCAT	2 cut(s)	973, 2167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.