Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Reverse (-)

29837934 .. 29839373

Gene Structure 1440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1220900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCAGGGGGAAGACCCCTCGCAATCTCTGCTATCAGGTTTTGTGCATTATCAGATTCATTTGCCTGTTCATGGATTGTGGGACTCGCTGTTTTGCGAGAATGTATAGTGCTGGAGATGAAGACTTGGAACCTATTGCTTCCTCTTCAAGTCGATATGGAGAACAAATTTCTTTGCCTTGAAGAACCAAAAGAGAAAGATATGCCAAATCTTAAAAGCAAAGAACTCCTAGTTGGACCTAAGGTGGTTCTTCTTCCTCGGAGCTCACCAAGTTTGCGTTCTCTTTCTGCTGATTCAATTGAAGGTCGACCAAAGCTTCATAAGTACTTCAGAAGCTTTCATGAATATTATGCAGAGTATGCATGTAAGGTTTACTTTGAACTCGAGTATCATGGACCCATCTTGAAGAGGATAATTGATGACCAGCATGCTCGCCTAGGTGCTGCACAACAGAGGCTCTCGCAAGTTGAGGAGAAGCAATCAAAATTGGAGGACAGAACTGATAGTGCAATCCAGATGCACAATCTTCTGGAGGAGCGCTTGAAACGTTTAAGAAACTTGCCTGGGCCTGTCCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

194

Amino Acids

22.16

Weight (kDa)

8.56

Isoelectric Point (pI)

71.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	307
AclI	AACGTT	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	326
AfeI	AGCGCT	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	7 cut(s)	149, 182, 297, 302, 380, 406, 544
AjnI	CCWGG	2 cut(s)	4, 562
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 262, 294
AluBI	AGCT	4 cut(s)	264, 316, 336, 579
AluI	AGCT	4 cut(s)	264, 316, 336, 579
Alw21I	GWGCWC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	383
Aor51HI	AGCGCT	1 cut(s)	539
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	167
AspA2I	CCTAGG	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	3 cut(s)	236, 395, 566
AsuHPI	GGTGA	1 cut(s)	258
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	236, 395
AvrII	CCTAGG	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	240
BaeI	ACNNNNGTAYC	2 cut(s)	371, 404
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	2 cut(s)	19, 128
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	6, 564
BfaI	CTAG	2 cut(s)	230, 437
BfoI	RGCGCY	1 cut(s)	541
BisI	GCNGC	1 cut(s)	444
BlnI	CCTAGG	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	445
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	6, 564
Bme18I	GGWCC	2 cut(s)	236, 395
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	3 cut(s)	236, 395, 566
BmiI	GGNNCC	2 cut(s)	131, 397
BmrFI	CCNGG	2 cut(s)	6, 564
BmsI	GCATC	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	19, 128
BpmI	CTGGAG	2 cut(s)	134, 551
BsaJI	CCNNGG	4 cut(s)	5, 257, 436, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse21I	CCTNAGG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	6, 564
BseDI	CCNNGG	4 cut(s)	5, 257, 436, 563
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	485, 548
BseXI	GCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	568
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	131, 397
BssECI	CCNNGG	4 cut(s)	5, 257, 436, 563
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	6, 564
Bst6I	CTCTTC	2 cut(s)	150, 401
BstAPI	GCANNNNNTGC	2 cut(s)	29, 359
BstC8I	GCNNGC	2 cut(s)	429, 433
BstDEI	CTNAG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 359
BstNI	CCWGG	2 cut(s)	6, 564
BstNSI	RCATGY	2 cut(s)	366, 431
BstSCI	CCNGG	2 cut(s)	4, 562
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	2 cut(s)	19, 128
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	429, 433
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	3 cut(s)	236, 395, 566
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	5 cut(s)	72, 341, 363, 392, 428
CviJI	RGCY	6 cut(s)	264, 316, 336, 457, 568, 579
CviKI_1	RGCY	6 cut(s)	264, 316, 336, 457, 568, 579
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	150, 401
EarI	CTCTTC	2 cut(s)	150, 401
Ecl136II	GAGCTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	236, 395
Eco47III	AGCGCT	1 cut(s)	539
Eco53kI	GAGCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	313
Eco81I	CCTNAGG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	4, 562
EcoT14I	CCWWGG	1 cut(s)	436
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	5 cut(s)	75, 344, 366, 395, 431
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	5 cut(s)	71, 340, 362, 391, 427
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	2 cut(s)	230, 437
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	1 cut(s)	444
GsuI	CTGGAG	2 cut(s)	134, 551
HaeII	RGCGCY	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	568
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	5 cut(s)	75, 344, 366, 395, 431
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	308
HindII	GTYRAC	1 cut(s)	308
HindIII	AAGCTT	2 cut(s)	314, 334
HinfI	GANTC	3 cut(s)	56, 84, 293
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	2 cut(s)	308, 373
Hpy188I	TCNGA	3 cut(s)	55, 261, 332
Hpy188III	TCNNGA	5 cut(s)	341, 403, 514, 530, 574
Hpy8I	GTNNAC	2 cut(s)	308, 373
HpyAV	CCTTC	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	6 cut(s)	47, 353, 362, 446, 509, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 359
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	5 cut(s)	75, 344, 366, 395, 431
HspAI	GCGC	1 cut(s)	538
LmnI	GCTCC	2 cut(s)	261, 535
LpnPI	CCDG	9 cut(s)	18, 22, 79, 98, 437, 515, 527, 549, 576
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	2 cut(s)	230, 437
MaeII	ACGT	1 cut(s)	547
MboII	GAAGA	8 cut(s)	24, 133, 137, 194, 242, 245, 418, 518
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	4 cut(s)	167, 297, 414, 485
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	8 cut(s)	29, 153, 267, 402, 447, 463, 484, 526
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	2 cut(s)	213, 551
MspR9I	CCNGG	2 cut(s)	6, 564
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	6, 564
MwoI	GCNNNNNNNGC	2 cut(s)	29, 359
NlaIII	CATG	5 cut(s)	75, 344, 366, 395, 431
NlaIV	GGNNCC	2 cut(s)	131, 397
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	2 cut(s)	366, 431
PaeI	GCATGC	1 cut(s)	431
PaeR7I	CTCGAG	1 cut(s)	383
PagI	TCATGA	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	56, 293
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	266
Psp1406I	AACGTT	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	4, 562
PspGI	CCWGG	2 cut(s)	4, 562
PspN4I	GGNNCC	2 cut(s)	131, 397
PspPI	GGNCC	3 cut(s)	236, 395, 566
PspXI	VCTCGAGB	1 cut(s)	383
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	266
SalI	GTCGAC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	213, 551
SatI	GCNGC	1 cut(s)	444
Sau96I	GGNCC	3 cut(s)	236, 395, 566
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	6, 564
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	507
Sfr274I	CTCGAG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	236, 395
SlaI	CTCGAG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	4 cut(s)	167, 297, 414, 485
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	2 cut(s)	230, 437
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	4, 562
StyI	CCWWGG	1 cut(s)	436
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	3 cut(s)	153, 307, 384
TasI	AATT	4 cut(s)	167, 297, 414, 485
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	2 cut(s)	56, 293
Tru1I	TTAA	2 cut(s)	213, 551
Tru9I	TTAA	2 cut(s)	213, 551
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	6 cut(s)	48, 60, 134, 308, 329, 357
VpaK11BI	GGWCC	2 cut(s)	236, 395
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	2 cut(s)	366, 431
XhoI	CTCGAG	1 cut(s)	383
XmaJI	CCTAGG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	307
XspI	CTAG	2 cut(s)	230, 437
ZrmI	AGTACT	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.