Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Forward (+)

7798087 .. 7805078

Gene Structure 6992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGAGGTTCAACTTCGACTTGGAGGAAACTAAACCGGAGCCGAGCCGGTCCGCCACCCCCAAAGACGAAGTCGAATGGGTCCCACTCCACCACCATCCGGTCTTCACCTCCACGACCGCCCCAGCCCACCAGCCCACTGACGATTCTTCGCCGCTCAGAAACCTCTTAGCCTGGGACGGAGCCTCTCGCCTTTACTTCTGGGACTCCGACGACCTCTGCCTTCACCGGATCTCCGTCCGCCTCGGCGAGCCTGAGCCGACCTCCGTCTTCGCCGCTTCGCCCTCCAAGATACTGAAACCAGATGTGAAGCTGAACTTTGCTGTTAACAAAGTCTCCATCAATAGAAACGGGACGGCGATGCTCCTTTATGGTTCCGATGGTCTGTGCATTATGTATCTTTACGGGCGTACTTCGTCCAGAGATGGTACCACAATTTGCAGGACTGTTACTGTTGGTTCACAAATATACTTGAGTGGAACCAATGTCATACGGATACTGCAAGTTTCATGGCACCCTTGCAGTGATACTCATCTGGGAATTCTTTCTTCTGATTCAGTTTTCAGATTATTTCATTTGTCTTCAGATCTTATTCAACCAGAGCAGGCGTATTATCTACAGCCTGTGCAACCAGGTAGATCCAGGAATGCCACATCAATTTGCCCAGTGGACTTTTCATTTGGTGGTGATCACTTGTGGGACTGTTTTAGTGTTTTCATTTTGTTCAGTGATGGTTCAATTTACATCCTTTGTCCAATTGTTCCATTTGGAAGTGTCTATAAATGGGAATCGATTGTAGATATATATAATGATGCTCAGACATTTGGCCTGAAGTCGCCCAACTCAACGGCTGTTAGTAATTCAAATCTGGCTATTTCTTGGTTGGAAGCAACATTTCCAGAAATTGCAGGGCAAACAACAGATGGAGCAGATCTATCTGTAATAAGAGCTCGTCCTTATGCTTTATTTGATGCATCACTCTCACTGCAGGGACCTTTGAGGAAAGTATCTCGTGGTGAGGATGAAGCGGATTCAGCATTTCGAGGTAAAGAATGTGAAGGTCGAGCGGTTAGCTTTCTTTATAATTTAGTCAGCAAAGATTCAATTCTTGTGACTGCTTGGAGTGGTGGGCAACTGCAAATAGATGCTCTGGCTGATGAAATCCAACCGGTCTGGAATGTTGGTTGTCCTCCTCGCCTTCGTGTTGATTCCCACGACAATATTCATGGTCTTGCAATGATCTGTGAGTCAACCCCAGATAAGCTTTCAACTGTGAAGCTTGATCAACCACTTGATAGTACTCTTTGGTTGGGCCATCCTCCCCCTCTGTTGAGACTGGCTATTGTGGATCTGGCTCTGCCTAAGAAAGCAGGAAGTGATTCGCTTGTTATGATGTTTATTGATCCCCTCATGCTGGAAAGAATATACACCCTTCATGATGGAGGGATAGATTCAATAGTGTTGCATTATCTCCCATTTACAAGTCAGAACAGTGGCAAGAATGAGACCATGAGAACTCCTTCAGTGCATCCTGTCCTCAGTACTTGCCAGGGAGAATTCTCCTCACACTCTCCACTCTCTGGTTTTGTGTCATTATCAGATTCATTTGGGTATTCATGGATAGTGGCAGTCACTGCTTCTCAAGAATGTGTTGTGCTAGAGATGAAAACCTTAAACCTGTTGCTTCCTCTTCATGTTGATACGGAGAAAAAATCCATTCTTCCGGAAGAGCCAAAAGAGAAAGATAAACCAGATATTATCATAAGCAAAGAACTCCTAGGTGGACCTAAGGTGGTTCTTGTTCCTCAGACATCACCAAATTTGCGTTCTGTTTCTGCTGATTCAATTGAAGGTCGATCAATGCTTCATGAATACTTCAAGCTTTTCCATGAAAATTATGTGGAGTATGCACACAAGGTTTACTTTGAACTCAAGCATCATGGGCCGCACTTGAAGAGGATAATCAATGACCAACATGGTCGTTTAGGTGGGGCAAAGCAGAGGCTTTTGCAAGTTGAGGAAAAGTACTCGGACTTAGAACACCGCATTAATGATGCAGTGCAGATGCAGAATCATCTGGAGGAGCGCCTAAAACGCTTGCGGAGCTTACCCGGGGTTCATAAGAAACCACTTTCCACAGCTGAGCGGGACTTCAAATCTCAGCTCGACCAGTTTTCCGGGGTTGAGTTGGATGCATTATGCTCTACTGTTAATGCGTTAACTGCAAGGATGAAAAGACACGGACAATCACCTAAGGCCAATGTATCAAACCAAAAGAAGCTGGTATCAAGGAGGAAGGATCCTGTGCAAGAGTCACAAATCTCCCAGTTGAAATCGTGCCTAGAGAAACTGTCACTGGTCAATAGTGAGAATTCGAAAAAGGTTAAGATTGTGGAATCTGCATTAAGAATCAGAGTACAAGTTGAACAGAAGCTCAACAAATTGAAGCTTGGATCCACCAGCCGCTGTAGTTATTCTAGCCTGGCCCTGCCACAGACGGCCGGCAGCCGCCCTAATGATGATAGTGGGGGTGCGGCTGGATATCCTATCAGCTGCAGCGAGTGGTTTTGCAGCAGGCCACATGCTAAAAGTTGTGCCTCACTGACCCAACGAAGAAAGGTAGGTTTCTACGAGATGAGGCTTTGCTGTCTTGGTGGGGATCCATTAGGCAATGAAGTTTCGCATTTAAAATACCCCCAACCTACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

902

Amino Acids

100.25

Weight (kDa)

6.88

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup88	PF10168	29 - 227	6.8e-18	Nuclear pore component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	425, 510
AccB7I	CCANNNNNTGG	1 cut(s)	1577
AccBSI	CCGCTC	3 cut(s)	154, 1064, 2143
AccIII	TCCGGA	1 cut(s)	1720
AcoI	YGGCCR	1 cut(s)	2496
AcsI	RAATTY	4 cut(s)	537, 1553, 1816, 2368
AcuI	CTGAAG	3 cut(s)	564, 848, 1503
AfaI	GTAC	6 cut(s)	409, 427, 1297, 1540, 2024, 2415
AfiI	CCNNNNNNNGG	3 cut(s)	97, 1411, 1577
AgeI	ACCGGT	1 cut(s)	1165
AjnI	CCWGG	5 cut(s)	170, 628, 638, 1545, 2478
AjuI	GAANNNNNNNTTGG	2 cut(s)	1807, 1839
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	3 cut(s)	337, 1324, 1496
AlwNI	CAGNNNCTG	2 cut(s)	1631, 2463
Ama87I	CYCGRG	1 cut(s)	2108
Aor13HI	TCCGGA	1 cut(s)	1720
AoxI	GGCC	7 cut(s)	823, 1309, 1940, 2253, 2481, 2496, 2573
ApeKI	GCWGC	4 cut(s)	2502, 2550, 2553, 2568
ApoI	RAATTY	4 cut(s)	537, 1553, 1816, 2368
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 659, 691
AseI	ATTAAT	1 cut(s)	2046
AsiGI	ACCGGT	1 cut(s)	1165
Asp700I	GAANNNNTTC	3 cut(s)	541, 1375, 1516
Asp718I	GGTACC	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	1774
AspLEI	GCGC	1 cut(s)	2085
AspS9I	GGNCC	7 cut(s)	48, 79, 989, 1309, 1781, 1940, 2482
AsuC2I	CCSGG	3 cut(s)	2109, 2110, 2176
AsuHPI	GGTGA	6 cut(s)	97, 215, 695, 1025, 1803, 2238
AsuII	TTCGAA	1 cut(s)	2372
AvaI	CYCGRG	1 cut(s)	2108
AvaII	GGWCC	4 cut(s)	48, 79, 989, 1781
AvrII	CCTAGG	1 cut(s)	1774
AxyI	CCTNAGG	2 cut(s)	1785, 2250
BamHI	GGATCC	3 cut(s)	2296, 2450, 2656
BanI	GGYRCC	2 cut(s)	425, 510
BanII	GRGCYC	1 cut(s)	949
BauI	CACGAG	1 cut(s)	1008
BbsI	GAAGAC	3 cut(s)	94, 259, 570
Bbv12I	GWGCWC	1 cut(s)	949
BbvI	GCAGC	4 cut(s)	2514, 2537, 2565, 2580
BccI	CCATC	8 cut(s)	102, 344, 371, 416, 722, 914, 1320, 1430
BceAI	ACGGC	3 cut(s)	369, 861, 2511
BciT130I	CCWGG	5 cut(s)	172, 630, 640, 1547, 2480
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	2 cut(s)	685, 1279
BcnI	CCSGG	3 cut(s)	2109, 2110, 2176
BcoDI	GTCTC	3 cut(s)	337, 1324, 1496
BfaI	CTAG	4 cut(s)	1655, 1775, 2339, 2475
BfmI	CTRYAG	4 cut(s)	614, 983, 2464, 2551
BfoI	RGCGCY	1 cut(s)	2086
BfuI	GTATCC	1 cut(s)	486
BglII	AGATCT	2 cut(s)	583, 928
BlnI	CCTAGG	1 cut(s)	1774
BlpI	GCTNAGC	1 cut(s)	2139
BmcAI	AGTACT	3 cut(s)	1297, 1540, 2024
Bme1390I	CCNGG	8 cut(s)	172, 630, 640, 1547, 2109, 2110, 2176, 2480
Bme18I	GGWCC	4 cut(s)	48, 79, 989, 1781
BmeT110I	CYCGRG	1 cut(s)	2108
BmgT120I	GGNCC	7 cut(s)	48, 79, 989, 1309, 1781, 1940, 2482
BmrFI	CCNGG	8 cut(s)	172, 630, 640, 1547, 2109, 2110, 2176, 2480
BmrI	ACTGGG	2 cut(s)	656, 2317
BmuI	ACTGGG	2 cut(s)	656, 2317
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	3 cut(s)	94, 259, 570
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	2096
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	2139
Bpu14I	TTCGAA	1 cut(s)	2372
BpuEI	CTTGAG	3 cut(s)	490, 1623, 1913
BpuMI	CCSGG	3 cut(s)	2109, 2110, 2176
Bsa29I	ATCGAT	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	1496
BsaJI	CCNNGG	7 cut(s)	171, 241, 1546, 1774, 2108, 2109, 2175
BsaWI	WCCGGW	5 cut(s)	34, 97, 225, 1165, 1720
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 317, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 1411, 1577
Bse118I	RCCGGY	3 cut(s)	45, 1165, 2498
Bse1I	ACTGG	5 cut(s)	662, 1338, 2167, 2323, 2358
Bse21I	CCTNAGG	2 cut(s)	1785, 2250
Bse3DI	GCAATG	2 cut(s)	1239, 2674
Bse8I	GATNNNNATC	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	1720
BseBI	CCWGG	5 cut(s)	172, 630, 640, 1547, 2480
BseCI	ATCGAT	1 cut(s)	788
BseDI	CCNNGG	7 cut(s)	171, 241, 1546, 1774, 2108, 2109, 2175
BseGI	GGATG	7 cut(s)	94, 741, 1024, 1312, 1525, 2194, 2232
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	97, 1411, 1577
BseMI	GCAATG	2 cut(s)	1239, 2674
BseMII	CTCAG	7 cut(s)	169, 243, 827, 1549, 1817, 2130, 2171
BseNI	ACTGG	5 cut(s)	662, 1338, 2167, 2323, 2358
BseRI	GAGGAG	3 cut(s)	1179, 1549, 2093
BseX3I	CGGCCG	1 cut(s)	2496
BseXI	GCAGC	4 cut(s)	2514, 2537, 2565, 2580
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	2078
Bsh1285I	CGRYCG	2 cut(s)	117, 2499
BshFI	GGCC	7 cut(s)	825, 1311, 1942, 2255, 2483, 2498, 2575
BshNI	GGYRCC	2 cut(s)	425, 510
BshTI	ACCGGT	1 cut(s)	1165
BshVI	ATCGAT	1 cut(s)	788
BsiEI	CGRYCG	2 cut(s)	117, 2499
BsiHKAI	GWGCWC	1 cut(s)	949
BsiHKCI	CYCGRG	1 cut(s)	2108
BsiSI	CCGG	9 cut(s)	35, 46, 98, 226, 1166, 1721, 2109, 2175, 2499
BslFI	GGGAC	7 cut(s)	65, 188, 215, 364, 710, 1002, 2159
BslI	CCNNNNNNNGG	3 cut(s)	97, 1411, 1577
BsmAI	GTCTC	3 cut(s)	337, 1324, 1496
BsmFI	GGGAC	7 cut(s)	65, 188, 215, 364, 710, 1002, 2159
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	7 cut(s)	825, 1311, 1942, 2255, 2483, 2498, 2575
Bso31I	GGTCTC	1 cut(s)	1496
BsoBI	CYCGRG	1 cut(s)	2108
Bsp119I	TTCGAA	1 cut(s)	2372
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp13I	TCCGGA	1 cut(s)	1720
Bsp1720I	GCTNAGC	1 cut(s)	2139
BspANI	GGCC	7 cut(s)	825, 1311, 1942, 2255, 2483, 2498, 2575
BspCNI	CTCAG	7 cut(s)	168, 244, 826, 1548, 1816, 2131, 2170
BspDI	ATCGAT	1 cut(s)	788
BspEI	TCCGGA	1 cut(s)	1720
BspHI	TCATGA	2 cut(s)	1432, 1864
BspMAI	CTGCAG	2 cut(s)	987, 2555
BspQI	GCTCTTC	1 cut(s)	1719
BspT104I	TTCGAA	1 cut(s)	2372
BspT107I	GGYRCC	2 cut(s)	425, 510
BspTNI	GGTCTC	1 cut(s)	1496
BsrBI	CCGCTC	3 cut(s)	154, 1064, 2143
BsrDI	GCAATG	2 cut(s)	1239, 2674
BsrFI	RCCGGY	3 cut(s)	45, 1165, 2498
BsrI	ACTGG	5 cut(s)	662, 1338, 2167, 2323, 2358
BssAI	RCCGGY	3 cut(s)	45, 1165, 2498
BssECI	CCNNGG	7 cut(s)	171, 241, 1546, 1774, 2108, 2109, 2175
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	1 cut(s)	1774
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	5 cut(s)	172, 630, 640, 1547, 2480
Bst4CI	ACNGT	7 cut(s)	445, 451, 701, 1270, 1490, 2206, 2349
Bst6I	CTCTTC	3 cut(s)	1692, 1719, 1946
BstAPI	GCANNNNNTGC	1 cut(s)	1631
BstBI	TTCGAA	1 cut(s)	2372
BstC8I	GCNNGC	5 cut(s)	248, 603, 2096, 2500, 2573
BstF5I	GGATG	7 cut(s)	94, 741, 1024, 1312, 1525, 2194, 2232
BstH2I	RGCGCY	1 cut(s)	2086
BstHHI	GCGC	1 cut(s)	2085
BstMAI	GTCTC	3 cut(s)	337, 1324, 1496
BstMCI	CGRYCG	2 cut(s)	117, 2499
BstMWI	GCNNNNNNNGC	6 cut(s)	1031, 1631, 1939, 2091, 2100, 2219
BstNI	CCWGG	5 cut(s)	172, 630, 640, 1547, 2480
BstNSI	RCATGY	1 cut(s)	2582
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	8 cut(s)	170, 628, 638, 1545, 2107, 2108, 2174, 2478
BstSFI	CTRYAG	4 cut(s)	614, 983, 2464, 2551
BstV1I	GCAGC	4 cut(s)	2514, 2537, 2565, 2580
BstV2I	GAAGAC	3 cut(s)	94, 259, 570
BstX2I	RGATCY	8 cut(s)	228, 583, 635, 928, 1345, 2296, 2450, 2656
BstYI	RGATCY	8 cut(s)	228, 583, 635, 928, 1345, 2296, 2450, 2656
BstZI	CGGCCG	1 cut(s)	2496
Bsu15I	ATCGAT	1 cut(s)	788
Bsu36I	CCTNAGG	2 cut(s)	1785, 2250
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	7 cut(s)	825, 1311, 1942, 2255, 2483, 2498, 2575
BsuTUI	ATCGAT	1 cut(s)	788
BtgZI	GCGATG	1 cut(s)	371
BtsCI	GGATG	7 cut(s)	94, 741, 1024, 1312, 1525, 2194, 2232
BtsI	GCAGTG	4 cut(s)	526, 980, 1629, 2061
Cac8I	GCNNGC	5 cut(s)	248, 603, 2096, 2500, 2573
CaiI	CAGNNNCTG	2 cut(s)	1631, 2463
CciI	TCATGA	2 cut(s)	1432, 1864
CfoI	GCGC	1 cut(s)	2085
Cfr10I	RCCGGY	3 cut(s)	45, 1165, 2498
Cfr13I	GGNCC	7 cut(s)	48, 79, 989, 1309, 1781, 1940, 2482
Cfr9I	CCCGGG	1 cut(s)	2108
ClaI	ATCGAT	1 cut(s)	788
CpoI	CGGWCCG	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	6 cut(s)	408, 426, 1296, 1539, 2023, 2414
CspAI	ACCGGT	1 cut(s)	1165
CspI	CGGWCCG	1 cut(s)	48
CviQI	GTAC	6 cut(s)	408, 426, 1296, 1539, 2023, 2414
DraI	TTTAAA	1 cut(s)	2685
EaeI	YGGCCR	1 cut(s)	2496
EagI	CGGCCG	1 cut(s)	2496
Eam1104I	CTCTTC	3 cut(s)	1692, 1719, 1946
EarI	CTCTTC	3 cut(s)	1692, 1719, 1946
EciI	GGCGGA	2 cut(s)	40, 227
Ecl136II	GAGCTC	1 cut(s)	947
EclXI	CGGCCG	1 cut(s)	2496
Eco130I	CCWWGG	1 cut(s)	1774
Eco24I	GRGCYC	1 cut(s)	949
Eco31I	GGTCTC	1 cut(s)	1496
Eco32I	GATATC	1 cut(s)	2540
Eco47I	GGWCC	4 cut(s)	48, 79, 989, 1781
Eco52I	CGGCCG	1 cut(s)	2496
Eco53kI	GAGCTC	1 cut(s)	947
Eco57I	CTGAAG	3 cut(s)	564, 848, 1503
Eco81I	CCTNAGG	2 cut(s)	1785, 2250
Eco88I	CYCGRG	1 cut(s)	2108
EcoICRI	GAGCTC	1 cut(s)	947
EcoO109I	RGGNCCY	2 cut(s)	79, 989
EcoRI	GAATTC	3 cut(s)	537, 1553, 2368
EcoRII	CCWGG	5 cut(s)	170, 628, 638, 1545, 2478
EcoRV	GATATC	1 cut(s)	2540
EcoT14I	CCWWGG	1 cut(s)	1774
EcoT22I	ATGCAT	2 cut(s)	973, 2194
EcoT38I	GRGCYC	1 cut(s)	949
ErhI	CCWWGG	1 cut(s)	1774
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 1904, 1936
FaqI	GGGAC	7 cut(s)	65, 188, 215, 364, 710, 1002, 2159
FauI	CCCGC	1 cut(s)	2136
FbaI	TGATCA	2 cut(s)	685, 1279
FokI	GGATG	7 cut(s)	81, 728, 1031, 1299, 1512, 2201, 2239
FriOI	GRGCYC	1 cut(s)	949
FspBI	CTAG	4 cut(s)	1655, 1775, 2339, 2475
GlaI	GCGC	1 cut(s)	2084
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	2096
HaeII	RGCGCY	1 cut(s)	2086
HaeIII	GGCC	7 cut(s)	825, 1311, 1942, 2255, 2483, 2498, 2575
HapII	CCGG	9 cut(s)	35, 46, 98, 226, 1166, 1721, 2109, 2175, 2499
HhaI	GCGC	1 cut(s)	2085
Hin6I	GCGC	1 cut(s)	2083
HinP1I	GCGC	1 cut(s)	2083
HincII	GTYRAC	3 cut(s)	325, 1248, 2217
HindII	GTYRAC	3 cut(s)	325, 1248, 2217
HindIII	AAGCTT	4 cut(s)	1259, 1274, 1877, 2444
HpaI	GTTAAC	2 cut(s)	325, 2217
HpaII	CCGG	9 cut(s)	35, 46, 98, 226, 1166, 1721, 2109, 2175, 2499
HphI	GGTGA	6 cut(s)	97, 215, 695, 1025, 1803, 2238
Hpy166II	GTNNAC	7 cut(s)	325, 458, 667, 1248, 1781, 1918, 2217
Hpy188III	TCNNGA	8 cut(s)	417, 896, 1171, 1433, 1640, 1721, 1865, 2075
Hpy8I	GTNNAC	7 cut(s)	325, 458, 667, 1248, 1781, 1918, 2217
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	7 cut(s)	230, 1049, 1205, 1439, 1527, 1841, 2287
HpyCH4III	ACNGT	7 cut(s)	445, 451, 701, 1270, 1490, 2206, 2349
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1031, 1631, 1939, 2091, 2100, 2219
HspAI	GCGC	1 cut(s)	2083
KflI	GGGWCCC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	1720
KpnI	GGTACC	1 cut(s)	429
KroI	GCCGGC	1 cut(s)	2498
KroNI	GCCGGC	1 cut(s)	2500
Ksp22I	TGATCA	2 cut(s)	685, 1279
KspAI	GTTAAC	2 cut(s)	325, 2217
LguI	GCTCTTC	1 cut(s)	1719
LmnI	GCTCC	6 cut(s)	37, 179, 366, 923, 2080, 2100
Lsp1109I	GCAGC	4 cut(s)	2514, 2537, 2565, 2580
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	4 cut(s)	1655, 1775, 2339, 2475
MaeIII	GTNAC	5 cut(s)	445, 1108, 1627, 2310, 2349
MbiI	CCGCTC	3 cut(s)	154, 1064, 2143
MfeI	CAATTG	2 cut(s)	753, 1842
MflI	RGATCY	8 cut(s)	228, 583, 635, 928, 1345, 2296, 2450, 2656
MhlI	GDGCHC	1 cut(s)	949
MlyI	GAGTC	3 cut(s)	197, 1253, 2318
MmeI	TCCRAC	4 cut(s)	231, 861, 1186, 2166
Mph1103I	ATGCAT	2 cut(s)	973, 2194
MroI	TCCGGA	1 cut(s)	1720
MroNI	GCCGGC	1 cut(s)	2498
MroXI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
MseI	TTAA	8 cut(s)	324, 1670, 2046, 2208, 2216, 2382, 2402, 2684
MspA1I	CMGCKG	3 cut(s)	2138, 2463, 2550
MspI	CCGG	9 cut(s)	35, 46, 98, 226, 1166, 1721, 2109, 2175, 2499
MspR9I	CCNGG	8 cut(s)	172, 630, 640, 1547, 2109, 2110, 2176, 2480
MunI	CAATTG	2 cut(s)	753, 1842
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	5 cut(s)	172, 630, 640, 1547, 2480
MwoI	GCNNNNNNNGC	6 cut(s)	1031, 1631, 1939, 2091, 2100, 2219
NaeI	GCCGGC	1 cut(s)	2500
NciI	CCSGG	3 cut(s)	2109, 2110, 2176
NgoMIV	GCCGGC	1 cut(s)	2498
NmeAIII	GCCGAG	2 cut(s)	66, 222
NmuCI	GTSAC	4 cut(s)	1108, 1627, 2310, 2349
NsiI	ATGCAT	2 cut(s)	973, 2194
NspI	RCATGY	1 cut(s)	2582
NspV	TTCGAA	1 cut(s)	2372
PagI	TCATGA	2 cut(s)	1432, 1864
PciSI	GCTCTTC	1 cut(s)	1719
PctI	GAATGC	1 cut(s)	649
PdiI	GCCGGC	1 cut(s)	2500
PdmI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	1577
PfoI	TCCNGGA	1 cut(s)	638
PinAI	ACCGGT	1 cut(s)	1165
PleI	GAGTC	3 cut(s)	197, 1252, 2317
PpsI	GAGTC	3 cut(s)	197, 1252, 2317
PpuMI	RGGWCCY	2 cut(s)	79, 989
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	2046
PsiI	TTATAA	1 cut(s)	1080
Psp124BI	GAGCTC	1 cut(s)	949
Psp5II	RGGWCCY	2 cut(s)	79, 989
Psp6I	CCWGG	5 cut(s)	170, 628, 638, 1545, 2478
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	5 cut(s)	170, 628, 638, 1545, 2478
PspPI	GGNCC	7 cut(s)	48, 79, 989, 1309, 1781, 1940, 2482
PspPPI	RGGWCCY	2 cut(s)	79, 989
PstI	CTGCAG	2 cut(s)	987, 2555
PstNI	CAGNNNCTG	2 cut(s)	1631, 2463
PsuI	RGATCY	8 cut(s)	228, 583, 635, 928, 1345, 2296, 2450, 2656
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	2 cut(s)	2138, 2550
RsaI	GTAC	6 cut(s)	409, 427, 1297, 1540, 2024, 2415
RsaNI	GTAC	6 cut(s)	408, 426, 1296, 1539, 2023, 2414
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	949
SapI	GCTCTTC	1 cut(s)	1719
SaqAI	TTAA	8 cut(s)	324, 1670, 2046, 2208, 2216, 2382, 2402, 2684
Sau96I	GGNCC	7 cut(s)	48, 79, 989, 1309, 1781, 1940, 2482
ScaI	AGTACT	3 cut(s)	1297, 1540, 2024
SchI	GAGTC	3 cut(s)	197, 1253, 2318
ScrFI	CCNGG	8 cut(s)	172, 630, 640, 1547, 2109, 2110, 2176, 2480
SduI	GDGCHC	1 cut(s)	949
SexAI	ACCWGGT	1 cut(s)	628
SfcI	CTRYAG	4 cut(s)	614, 983, 2464, 2551
SfuI	TTCGAA	1 cut(s)	2372
SinI	GGWCC	4 cut(s)	48, 79, 989, 1781
SmaI	CCCGGG	1 cut(s)	2110
SmlI	CTYRAG	3 cut(s)	469, 1638, 1928
SmoI	CTYRAG	3 cut(s)	469, 1638, 1928
SspI	AATATT	1 cut(s)	1219
SspMI	CTAG	4 cut(s)	1655, 1775, 2339, 2475
SstI	GAGCTC	1 cut(s)	949
StyD4I	CCNGG	8 cut(s)	170, 628, 638, 1545, 2107, 2108, 2174, 2478
StyI	CCWWGG	1 cut(s)	1774
TaaI	ACNGT	7 cut(s)	445, 451, 701, 1270, 1490, 2206, 2349
TaqI	TCGA	8 cut(s)	15, 72, 788, 1039, 1060, 1852, 2163, 2372
TatI	WGTACW	4 cut(s)	1295, 1538, 2022, 2413
TauI	GCSGC	6 cut(s)	154, 275, 1945, 2463, 2508, 2534
Tru1I	TTAA	8 cut(s)	324, 1670, 2046, 2208, 2216, 2382, 2402, 2684
Tru9I	TTAA	8 cut(s)	324, 1670, 2046, 2208, 2216, 2382, 2402, 2684
TseFI	GTSAC	4 cut(s)	1108, 1627, 2310, 2349
TseI	GCWGC	4 cut(s)	2502, 2550, 2553, 2568
Tsp45I	GTSAC	4 cut(s)	1108, 1627, 2310, 2349
TspGWI	ACGGA	6 cut(s)	192, 223, 253, 505, 1715, 2253
TspMI	CCCGGG	1 cut(s)	2108
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	1577
VpaK11BI	GGWCC	4 cut(s)	48, 79, 989, 1781
VspI	ATTAAT	1 cut(s)	2046
XapI	RAATTY	4 cut(s)	537, 1553, 1816, 2368
XceI	RCATGY	1 cut(s)	2582
XmaI	CCCGGG	1 cut(s)	2108
XmaJI	CCTAGG	1 cut(s)	1774
XmnI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
XspI	CTAG	4 cut(s)	1655, 1775, 2339, 2475
ZrmI	AGTACT	3 cut(s)	1297, 1540, 2024
Zsp2I	ATGCAT	2 cut(s)	973, 2194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.