Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Reverse (-)

29844329 .. 29845280

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1221200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGGTACAACTTCGACCCGCGGGCAACGGAACCGGAACCGGAACCGGAGCCGGGCCGGTCTCCGACGCCCGGAAGAGACGAAGTGGAGTGGGTCCCGCTGCAGAACCAGCCGGTCTACTCCTCCTCTCCGGTCCACGACTCGACCGGGGCTCGGGCGCCCAGAAATCTCTTGGCCTGGGACGGAGCGTCTCGGTTTTACTTCTGGGACTCCGATAAGCTATGCCTTCATCGGATGTCCATTCGGCGAACCCGAACCGACTTCCGTCACCGCTGCTTTCCCTTCCAAGCAATTGCATCTCGAATTGTACTGCAACCGGATGTGAAGCTCGACTTTTCTGTTCACAAAATCTCGATCAATAGGAATGGATCAGCATTGCTCCTTTCAGGTTCGAGTAATCTATGCGTTATGTACCTTAGGGGTGGACTTCCAACAAAGACAATGCAACCATTTGCAGGTATGATCGGAAGATGGCAATACGTTATTAATTTTCATTTTCATCTTAAACATGTTGTGTTGGGGTGTCTTAGAAAGCCGCTTGAGCAGGGAATGAACTGTAATGGTGGTTTAGATTATACGTTGACATGTTCGTTTAGGCTTAATTTTACGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

205

Amino Acids

23.35

Weight (kDa)

9.34

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	22
AciI	CCGC	5 cut(s)	20, 22, 98, 271, 536
AclWI	GGATC	1 cut(s)	376
AcyI	GRCGYC	2 cut(s)	68, 158
AfaI	GTAC	3 cut(s)	8, 309, 413
AfiI	CCNNNNNNNGG	4 cut(s)	53, 71, 153, 455
AflIII	ACRYGT	3 cut(s)	508, 584, 608
AhdI	GACNNNNNGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	220, 328
AluI	AGCT	2 cut(s)	220, 328
Alw26I	GTCTC	3 cut(s)	66, 72, 195
AlwI	GGATC	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	55, 174
ApeKI	GCWGC	2 cut(s)	100, 273
AseI	ATTAAT	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	3 cut(s)	55, 94, 133
AsuC2I	CCSGG	3 cut(s)	54, 72, 148
AsuHPI	GGTGA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	2 cut(s)	94, 133
AxyI	CCTNAGG	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	87, 260
BccI	CCATC	1 cut(s)	465
BciT130I	CCWGG	1 cut(s)	178
BcnI	CCSGG	3 cut(s)	54, 72, 148
BcoDI	GTCTC	3 cut(s)	66, 72, 195
BfmI	CTRYAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	446
BisI	GCNGC	3 cut(s)	101, 274, 536
BlsI	GCNGC	3 cut(s)	102, 275, 537
Bme1390I	CCNGG	4 cut(s)	54, 72, 148, 178
Bme18I	GGWCC	2 cut(s)	94, 133
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	3 cut(s)	55, 94, 133
BmiI	GGNNCC	7 cut(s)	33, 39, 45, 51, 95, 96, 159
BmrFI	CCNGG	4 cut(s)	54, 72, 148, 178
BmsI	GCATC	1 cut(s)	305
BoxI	GACNNNNGTC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	560
BpuMI	CCSGG	3 cut(s)	54, 72, 148
BsaAI	YACGTR	1 cut(s)	609
BsaHI	GRCGYC	2 cut(s)	68, 158
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	20, 147, 177
BsaWI	WCCGGW	5 cut(s)	34, 40, 46, 130, 316
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 71, 153, 455
Bse118I	RCCGGY	2 cut(s)	57, 112
Bse21I	CCTNAGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	3 cut(s)	20, 147, 177
BseGI	GGATG	2 cut(s)	240, 325
BseLI	CCNNNNNNNGG	4 cut(s)	53, 71, 153, 455
BseMI	GCAATG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	112, 115
BseXI	GCAGC	2 cut(s)	87, 260
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	57, 176
BshNI	GGYRCC	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	153
BslFI	GGGAC	3 cut(s)	80, 194, 221
BslI	CCNNNNNNNGG	4 cut(s)	53, 71, 153, 455
BsmAI	GTCTC	3 cut(s)	66, 72, 195
BsmBI	CGTCTC	2 cut(s)	72, 195
BsmFI	GGGAC	3 cut(s)	80, 194, 221
BsnI	GGCC	2 cut(s)	57, 176
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	354, 368, 462
BspACI	CCGC	5 cut(s)	20, 22, 98, 271, 536
BspANI	GGCC	2 cut(s)	57, 176
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	7 cut(s)	33, 39, 45, 51, 95, 96, 159
BspMAI	CTGCAG	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	57, 112
BssAI	RCCGGY	2 cut(s)	57, 112
BssECI	CCNNGG	3 cut(s)	20, 147, 177
BssMI	GATC	3 cut(s)	354, 368, 462
BssNI	GRCGYC	2 cut(s)	68, 158
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	2 cut(s)	68, 158
BstBAI	YACGTR	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	416, 527
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	240, 325
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	357, 371, 465
BstMAI	GTCTC	3 cut(s)	66, 72, 195
BstMBI	GATC	3 cut(s)	354, 368, 462
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 541
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	2 cut(s)	512, 588
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSCI	CCNGG	4 cut(s)	52, 70, 146, 176
BstSFI	CTRYAG	1 cut(s)	101
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	87, 260
Bsu36I	CCTNAGG	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	57, 176
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	240, 325
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	2 cut(s)	57, 112
Cfr13I	GGNCC	3 cut(s)	55, 94, 133
Cfr42I	CCGCGG	1 cut(s)	23
CseI	GACGC	2 cut(s)	76, 177
Csp6I	GTAC	3 cut(s)	7, 308, 412
CviAII	CATG	2 cut(s)	509, 585
CviJI	RGCY	9 cut(s)	52, 57, 112, 152, 176, 220, 328, 535, 598
CviKI_1	RGCY	9 cut(s)	52, 57, 112, 152, 176, 220, 328, 535, 598
CviQI	GTAC	3 cut(s)	7, 308, 412
DdeI	CTNAG	2 cut(s)	416, 527
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	3 cut(s)	356, 370, 464
DpnII	GATC	3 cut(s)	354, 368, 462
DriI	GACNNNNNGTC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	94, 133
Eco81I	CCTNAGG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	154
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
Esp3I	CGTCTC	2 cut(s)	72, 195
FaeI	CATG	2 cut(s)	512, 588
FaiI	YATR	7 cut(s)	223, 403, 410, 461, 510, 576, 586
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	3 cut(s)	80, 194, 221
FatI	CATG	2 cut(s)	508, 584
FauI	CCCGC	3 cut(s)	15, 27, 105
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	101, 274, 536
FokI	GGATG	2 cut(s)	247, 332
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	3 cut(s)	101, 274, 536
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	3 cut(s)	101, 274, 536
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	57, 176
HgaI	GACGC	2 cut(s)	76, 177
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	2 cut(s)	68, 158
Hin1II	CATG	2 cut(s)	512, 588
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HinfI	GANTC	2 cut(s)	140, 209
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	5 cut(s)	118, 136, 343, 425, 582
Hpy188I	TCNGA	4 cut(s)	66, 214, 234, 467
Hpy188III	TCNNGA	2 cut(s)	300, 352
Hpy8I	GTNNAC	5 cut(s)	118, 136, 343, 425, 582
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	236, 292
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	3 cut(s)	480, 578, 608
HpyCH4V	TGCA	5 cut(s)	103, 296, 313, 445, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 541
HpyF3I	CTNAG	2 cut(s)	416, 527
HpySE526I	ACGT	3 cut(s)	480, 578, 608
Hsp92I	GRCGYC	2 cut(s)	68, 158
Hsp92II	CATG	2 cut(s)	512, 588
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
KflI	GGGWCCC	1 cut(s)	94
KspI	CCGCGG	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	354, 368, 462
LmnI	GCTCC	3 cut(s)	49, 185, 384
Lsp1109I	GCAGC	2 cut(s)	87, 260
LweI	GCATC	1 cut(s)	305
MaeII	ACGT	3 cut(s)	480, 578, 608
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	3 cut(s)	356, 370, 464
MboI	GATC	3 cut(s)	354, 368, 462
MboII	GAAGA	2 cut(s)	87, 480
MfeI	CAATTG	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	4 cut(s)	291, 303, 487, 601
Mly113I	GGCGCC	1 cut(s)	158
MlyI	GAGTC	2 cut(s)	134, 203
MmeI	TCCRAC	2 cut(s)	89, 455
MnlI	CCTC	2 cut(s)	133, 136
MseI	TTAA	4 cut(s)	486, 504, 600, 613
MspA1I	CMGCKG	3 cut(s)	22, 100, 273
MspR9I	CCNGG	4 cut(s)	54, 72, 148, 178
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	109, 541
NarI	GGCGCC	1 cut(s)	158
NciI	CCSGG	3 cut(s)	54, 72, 148
NdeII	GATC	3 cut(s)	354, 368, 462
NlaIII	CATG	2 cut(s)	512, 588
NlaIV	GGNNCC	7 cut(s)	33, 39, 45, 51, 95, 96, 159
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	2 cut(s)	512, 588
PciI	ACATGT	2 cut(s)	508, 584
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	102, 275, 537
PleI	GAGTC	2 cut(s)	134, 203
PluTI	GGCGCC	1 cut(s)	161
PpsI	GAGTC	2 cut(s)	134, 203
Ppu21I	YACGTR	1 cut(s)	609
PpuMI	RGGWCCY	1 cut(s)	94
PscI	ACATGT	2 cut(s)	508, 584
PshAI	GACNNNNGTC	1 cut(s)	264
PshBI	ATTAAT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	7 cut(s)	33, 39, 45, 51, 95, 96, 159
PspPI	GGNCC	3 cut(s)	55, 94, 133
PspPPI	RGGWCCY	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	105
RsaI	GTAC	3 cut(s)	8, 309, 413
RsaNI	GTAC	3 cut(s)	7, 308, 412
SacII	CCGCGG	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	486, 504, 600, 613
SatI	GCNGC	3 cut(s)	101, 274, 536
Sau3AI	GATC	3 cut(s)	354, 368, 462
Sau96I	GGNCC	3 cut(s)	55, 94, 133
SchI	GAGTC	2 cut(s)	134, 203
ScrFI	CCNGG	4 cut(s)	54, 72, 148, 178
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	9 cut(s)	8, 222, 330, 391, 417, 460, 483, 581, 611
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	1 cut(s)	101
SfoI	GGCGCC	1 cut(s)	159
Sfr303I	CCGCGG	1 cut(s)	23
SgrBI	CCGCGG	1 cut(s)	23
SinI	GGWCC	2 cut(s)	94, 133
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	4 cut(s)	291, 303, 487, 601
SsiI	CCGC	5 cut(s)	20, 22, 98, 271, 536
SspDI	GGCGCC	1 cut(s)	157
StyD4I	CCNGG	4 cut(s)	52, 70, 146, 176
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	3 cut(s)	483, 581, 611
TaqI	TCGA	6 cut(s)	15, 143, 301, 330, 353, 392
TasI	AATT	4 cut(s)	291, 303, 487, 601
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	1 cut(s)	538
Tru1I	TTAA	4 cut(s)	486, 504, 600, 613
Tru9I	TTAA	4 cut(s)	486, 504, 600, 613
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	100, 273
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	4 cut(s)	218, 482, 488, 566
TspGWI	ACGGA	3 cut(s)	44, 198, 254
VpaK11BI	GGWCC	2 cut(s)	94, 133
VspI	ATTAAT	1 cut(s)	486
XceI	RCATGY	2 cut(s)	512, 588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.