Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Reverse (-)

59717561 .. 59725113

Gene Structure 7553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG362400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGAGGTTCAACTTCGACTTGGAGGAAACTAAACCGGACTCGAGCCGGTCCGCCACCCCCAAAGACGAAGTCGAATGGGTCCTACTCCACAACCATCCGGTCTTCACCTCCACCGCAGCCCCGGCCCACCAGCCCACCGACGATTCTCCGCCGCTCAGAAACCTCTTAGCCTGGGACGGAGCCTCTCGCCTTTACTTCTGGGACTCCGATGACCTCTGCCTTCACCGGATCTCCGTCCGCCTCGGCGAGCCTGAGCCGACCTCCGTCTTCGCCGCCTCGCCCTCCAAGATACTGAAACCAGATGTGAAGCTGAACTTTGCTGTTAACAAAGTCTCCATCAATAGAAACGGGACGGCAATGCTCCTTTATGGTTCCGATGGTCTATGCATTATGTATCTTTACGGGCGTACTTCGTCCAGAGATGGTACCACAATTTGCAGGACTGTTACTGTTGGTTCACAAATATACTTGAGTGGAACCAATGTCATACGGATACTGCAAGTTTCATGGCACCCTTGCAGTGATACTCATCTGGGAATTCTTTCTTCTGATTCAGTTTTCAGATTATTTCATTTGTCTTCAGATCTTATTCAACCAGAGCAGGTGTATTATCTACAGCCTGTGCAACCAGGTAGATCCAGGAATGCCACATCAATTTGCCCAGTGGACTTTTCATTTGGTGGTGATCACTTGTGGGACTGTTTTAGTGTTTTCATTTTGTTCAGCGATGGTTCAATTTACATCCTTTGTCCAATTGTTCCATTTGGAAGTGTCTATAAATGGGAATCGATTGTAGATATATATAATGATGCTCAGACATTTGGCCTGAAGTCACCCAACTCAACGGCTGTTAGTAATTCAAATCTGGCTATTTCTTGGTTGGAAGCAACATTTCCAGAAATTGCAGGGCAAACAACAGATGGAGCAGATCTATCTGTAATAAGAGCTCGTCCTTATGCTTTATTTGATGCATCACTCTCACTGCAGGGACCTTTGAGGAAAGTATCTCGTGGTGAGGATGAAGCGGATTCAGCATTTCGGGGTGCAGAATGTGAAGGTCGAGCGGTTAGCTTTCTTTATAATTTAGTCAGCAAAGATTCAATTCTTGTTACTGCTTGGAGTGGTGGGCAACTGCAAATAGATGCTCTGGCTGATGAAATCCAACCGGTCTGGAATGTTGGTTGTCCTCCTCGCCTTCGTGTTGATTCCCATGACAATATTCATGGTCTTGCAATGATCTGTGAGTCAACCCCAGATAAGCTTTCAACTGTGAAGCTTGATCAACCACTTGATAGTACGCTTTGGTTGGGCCATCCTCCCCCTCTGTTGAGACTGGCTATTGTGGATCTGGCTCTGCCTAAGAAAGCAGGAAGTGATTCTCTTGTTATGATGTTTGTTGATCCCCTCATGCTGGAAAGAATATACACCCTTCATGATGGAGGGATAGATTCAATAGTGTTGCATTATCTCCCATTTACAAGTCAGAACAGTGGCAAGAATGAGACCATGAGAACTCCTTCTGTGCATCCTGTCCTAAGTACTTGCCAGGGAGAATTCTCCTCACACTCTCCACTTTCTGGTTTTGTGTCATTATCAGATTCATTTGGGTATTCATGGATAGTGGCAGTCACTGCTTCTCAAGAATGTATTGTGCTAGAGATGAAAACCTTAAACCTGTTGCTTCCTCTTCATGTTGATACGGAGAAAAAATCCATTCTTCCAGAAGACCCAAAAGAGAAAGATAAACCAGATATTATCATAAGCAAAGAACTCCTAGGTGGACCTAAGGTGGTTCTTGTTCCTCAGACATCACCAAATTTGCGTTCTGTTTCTGCTGATTCAATTGAAGGTCGATCAATGCTTCATGAATACTTCAAGCTTTTCCATGAAAATTATGTGGAGTATGCGCACAAGGTTTACTTTGAACTCAAGCATCATGGGCCGCACTTGAAGAGGATAATCGATGACCAACATGGTCGTTTAGGTGGGGCAAAGCAGAGGCTTTTGCAAGTTGAGGAAAAGTACTCGGACTTGGAACACCGCATTAATGATGCAGTGCAGATGCAGAATCATCTGGAGGAGCGCCTAAAACGCTTGCGGAGCTTACCCGGGGTTCATAAGAAACCACTTTCCACAGCTGAGCGGGACTTCAAATCTCAGCTTGGTAATGATTCTTTTCTCTTCACAATAAGTTTATTGACTGAGCTCTTTCCCTGTAAACGAGCCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

743

Amino Acids

82.84

Weight (kDa)

5.8

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup88	PF10168	29 - 227	1.6e-18	Nuclear pore component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
AarI	CACCTGC	1 cut(s)	592
Acc16I	TGCGCA	1 cut(s)	1908
Acc36I	ACCTGC	1 cut(s)	592
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	425, 510
AccB7I	CCANNNNNTGG	1 cut(s)	1577
AccBSI	CCGCTC	3 cut(s)	154, 1064, 2143
AclWI	GGATC	4 cut(s)	236, 630, 1353, 1394
AcsI	RAATTY	3 cut(s)	537, 1553, 1816
AcuI	CTGAAG	2 cut(s)	564, 848
AfaI	GTAC	5 cut(s)	409, 427, 1297, 1540, 2024
AfiI	CCNNNNNNNGG	2 cut(s)	1411, 1577
AgeI	ACCGGT	1 cut(s)	1165
AjnI	CCWGG	5 cut(s)	170, 628, 638, 1545, 2225
AjuI	GAANNNNNNNTTGG	2 cut(s)	1807, 1839
Alw21I	GWGCWC	2 cut(s)	949, 2208
Alw26I	GTCTC	3 cut(s)	337, 1324, 1496
AlwI	GGATC	4 cut(s)	236, 630, 1353, 1394
AlwNI	CAGNNNCTG	1 cut(s)	1631
Ama87I	CYCGRG	2 cut(s)	40, 2108
AoxI	GGCC	4 cut(s)	123, 823, 1309, 1940
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	3 cut(s)	537, 1553, 1816
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 659, 691
AseI	ATTAAT	1 cut(s)	2046
AsiGI	ACCGGT	1 cut(s)	1165
Asp700I	GAANNNNTTC	3 cut(s)	541, 1375, 1516
Asp718I	GGTACC	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	1774
AspLEI	GCGC	2 cut(s)	1909, 2085
AspS9I	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
AsuC2I	CCSGG	3 cut(s)	122, 2109, 2110
AsuHPI	GGTGA	6 cut(s)	97, 215, 695, 825, 1025, 1803
AvaI	CYCGRG	2 cut(s)	40, 2108
AvaII	GGWCC	4 cut(s)	48, 79, 989, 1781
AvrII	CCTAGG	1 cut(s)	1774
AxyI	CCTNAGG	1 cut(s)	1785
BanI	GGYRCC	2 cut(s)	425, 510
BanII	GRGCYC	2 cut(s)	949, 2208
BauI	CACGAG	1 cut(s)	1008
BbsI	GAAGAC	4 cut(s)	94, 259, 570, 1731
Bbv12I	GWGCWC	2 cut(s)	949, 2208
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	8 cut(s)	102, 344, 371, 416, 722, 914, 1320, 1430
BceAI	ACGGC	2 cut(s)	369, 861
BciT130I	CCWGG	5 cut(s)	172, 630, 640, 1547, 2227
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	2 cut(s)	685, 1279
BcnI	CCSGG	3 cut(s)	122, 2109, 2110
BcoDI	GTCTC	3 cut(s)	337, 1324, 1496
BfaI	CTAG	2 cut(s)	1655, 1775
BfmI	CTRYAG	2 cut(s)	614, 983
BfoI	RGCGCY	1 cut(s)	2086
BfuAI	ACCTGC	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	486
BglII	AGATCT	2 cut(s)	583, 928
BisI	GCNGC	4 cut(s)	117, 152, 273, 1943
BlnI	CCTAGG	1 cut(s)	1774
BlpI	GCTNAGC	1 cut(s)	2139
BlsI	GCNGC	4 cut(s)	118, 153, 274, 1944
BmcAI	AGTACT	2 cut(s)	1540, 2024
Bme1390I	CCNGG	8 cut(s)	122, 172, 630, 640, 1547, 2109, 2110, 2227
Bme18I	GGWCC	4 cut(s)	48, 79, 989, 1781
BmeT110I	CYCGRG	2 cut(s)	40, 2108
BmgT120I	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
BmiI	GGNNCC	7 cut(s)	80, 181, 373, 427, 478, 512, 990
BmrFI	CCNGG	8 cut(s)	122, 172, 630, 640, 1547, 2109, 2110, 2227
BmrI	ACTGGG	1 cut(s)	656
BmsI	GCATC	8 cut(s)	799, 958, 980, 1132, 1534, 1942, 2041, 2052
BmuI	ACTGGG	1 cut(s)	656
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	4 cut(s)	94, 259, 570, 1731
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	2096
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	2139
BpuEI	CTTGAG	3 cut(s)	490, 1623, 1913
BpuMI	CCSGG	3 cut(s)	122, 2109, 2110
Bsa29I	ATCGAT	2 cut(s)	788, 1962
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	1496
BsaJI	CCNNGG	7 cut(s)	120, 171, 241, 1546, 1774, 2108, 2109
BsaWI	WCCGGW	4 cut(s)	34, 97, 225, 1165
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	1411, 1577
Bse118I	RCCGGY	2 cut(s)	45, 1165
Bse1I	ACTGG	2 cut(s)	662, 1338
Bse21I	CCTNAGG	1 cut(s)	1785
Bse3DI	GCAATG	2 cut(s)	363, 1239
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	5 cut(s)	172, 630, 640, 1547, 2227
BseCI	ATCGAT	2 cut(s)	788, 1962
BseDI	CCNNGG	7 cut(s)	120, 171, 241, 1546, 1774, 2108, 2109
BseGI	GGATG	5 cut(s)	94, 741, 1024, 1312, 1525
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	1411, 1577
BseMI	GCAATG	2 cut(s)	363, 1239
BseMII	CTCAG	7 cut(s)	169, 243, 827, 1817, 2130, 2171, 2193
BseNI	ACTGG	2 cut(s)	662, 1338
BseRI	GAGGAG	3 cut(s)	1179, 1549, 2093
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	2 cut(s)	1065, 2078
BshFI	GGCC	4 cut(s)	125, 825, 1311, 1942
BshNI	GGYRCC	2 cut(s)	425, 510
BshTI	ACCGGT	1 cut(s)	1165
BshVI	ATCGAT	2 cut(s)	788, 1962
BsiHKAI	GWGCWC	2 cut(s)	949, 2208
BsiHKCI	CYCGRG	2 cut(s)	40, 2108
BsiSI	CCGG	7 cut(s)	35, 46, 98, 122, 226, 1166, 2109
BslFI	GGGAC	6 cut(s)	188, 215, 364, 710, 1002, 2159
BslI	CCNNNNNNNGG	2 cut(s)	1411, 1577
BsmAI	GTCTC	3 cut(s)	337, 1324, 1496
BsmFI	GGGAC	6 cut(s)	188, 215, 364, 710, 1002, 2159
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	4 cut(s)	125, 825, 1311, 1942
Bso31I	GGTCTC	1 cut(s)	1496
BsoBI	CYCGRG	2 cut(s)	40, 2108
Bsp1286I	GDGCHC	2 cut(s)	949, 2208
Bsp1720I	GCTNAGC	1 cut(s)	2139
BspANI	GGCC	4 cut(s)	125, 825, 1311, 1942
BspCNI	CTCAG	7 cut(s)	168, 244, 826, 1816, 2131, 2170, 2194
BspDI	ATCGAT	2 cut(s)	788, 1962
BspHI	TCATGA	2 cut(s)	1432, 1864
BspLI	GGNNCC	7 cut(s)	80, 181, 373, 427, 478, 512, 990
BspMAI	CTGCAG	1 cut(s)	987
BspMI	ACCTGC	1 cut(s)	592
BspPI	GGATC	4 cut(s)	236, 630, 1353, 1394
BspT107I	GGYRCC	2 cut(s)	425, 510
BspTNI	GGTCTC	1 cut(s)	1496
BsrBI	CCGCTC	3 cut(s)	154, 1064, 2143
BsrDI	GCAATG	2 cut(s)	363, 1239
BsrFI	RCCGGY	2 cut(s)	45, 1165
BsrI	ACTGG	2 cut(s)	662, 1338
BssAI	RCCGGY	2 cut(s)	45, 1165
BssECI	CCNNGG	7 cut(s)	120, 171, 241, 1546, 1774, 2108, 2109
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	1 cut(s)	1774
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	5 cut(s)	172, 630, 640, 1547, 2227
Bst4CI	ACNGT	5 cut(s)	445, 451, 701, 1270, 1490
Bst6I	CTCTTC	3 cut(s)	1692, 1946, 2186
BstAPI	GCANNNNNTGC	1 cut(s)	1631
BstC8I	GCNNGC	2 cut(s)	248, 2096
BstF5I	GGATG	5 cut(s)	94, 741, 1024, 1312, 1525
BstH2I	RGCGCY	1 cut(s)	2086
BstHHI	GCGC	2 cut(s)	1909, 2085
BstMAI	GTCTC	3 cut(s)	337, 1324, 1496
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 1031, 1631, 1939, 2091, 2100
BstNI	CCWGG	5 cut(s)	172, 630, 640, 1547, 2227
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	8 cut(s)	120, 170, 628, 638, 1545, 2107, 2108, 2225
BstSFI	CTRYAG	2 cut(s)	614, 983
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	4 cut(s)	94, 259, 570, 1731
BstX2I	RGATCY	5 cut(s)	228, 583, 635, 928, 1345
BstYI	RGATCY	5 cut(s)	228, 583, 635, 928, 1345
Bsu15I	ATCGAT	2 cut(s)	788, 1962
Bsu36I	CCTNAGG	1 cut(s)	1785
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	4 cut(s)	125, 825, 1311, 1942
BsuTUI	ATCGAT	2 cut(s)	788, 1962
BtgZI	GCGATG	1 cut(s)	741
BtsCI	GGATG	5 cut(s)	94, 741, 1024, 1312, 1525
BtsI	GCAGTG	4 cut(s)	526, 980, 1629, 2061
BtsIMutI	CAGTG	6 cut(s)	526, 669, 980, 1495, 1629, 2061
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	248, 2096
CaiI	CAGNNNCTG	1 cut(s)	1631
CciI	TCATGA	2 cut(s)	1432, 1864
CfoI	GCGC	2 cut(s)	1909, 2085
Cfr10I	RCCGGY	2 cut(s)	45, 1165
Cfr13I	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
Cfr9I	CCCGGG	1 cut(s)	2108
ClaI	ATCGAT	2 cut(s)	788, 1962
CpoI	CGGWCCG	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	5 cut(s)	408, 426, 1296, 1539, 2023
CspAI	ACCGGT	1 cut(s)	1165
CspI	CGGWCCG	1 cut(s)	48
CviQI	GTAC	5 cut(s)	408, 426, 1296, 1539, 2023
Eam1104I	CTCTTC	3 cut(s)	1692, 1946, 2186
EarI	CTCTTC	3 cut(s)	1692, 1946, 2186
EciI	GGCGGA	3 cut(s)	40, 138, 227
Ecl136II	GAGCTC	2 cut(s)	947, 2206
Eco130I	CCWWGG	1 cut(s)	1774
Eco24I	GRGCYC	2 cut(s)	949, 2208
Eco31I	GGTCTC	1 cut(s)	1496
Eco47I	GGWCC	4 cut(s)	48, 79, 989, 1781
Eco53kI	GAGCTC	2 cut(s)	947, 2206
Eco57I	CTGAAG	2 cut(s)	564, 848
Eco81I	CCTNAGG	1 cut(s)	1785
Eco88I	CYCGRG	2 cut(s)	40, 2108
EcoICRI	GAGCTC	2 cut(s)	947, 2206
EcoO109I	RGGNCCY	2 cut(s)	79, 989
EcoRI	GAATTC	2 cut(s)	537, 1553
EcoRII	CCWGG	5 cut(s)	170, 628, 638, 1545, 2225
EcoT14I	CCWWGG	1 cut(s)	1774
EcoT22I	ATGCAT	2 cut(s)	389, 973
EcoT38I	GRGCYC	2 cut(s)	949, 2208
ErhI	CCWWGG	1 cut(s)	1774
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 1904, 1936
FaqI	GGGAC	6 cut(s)	188, 215, 364, 710, 1002, 2159
FauI	CCCGC	1 cut(s)	2136
FbaI	TGATCA	2 cut(s)	685, 1279
Fnu4HI	GCNGC	4 cut(s)	117, 152, 273, 1943
FokI	GGATG	5 cut(s)	81, 728, 1031, 1299, 1512
FriOI	GRGCYC	2 cut(s)	949, 2208
Fsp4HI	GCNGC	4 cut(s)	117, 152, 273, 1943
FspAI	RTGCGCAY	1 cut(s)	1908
FspBI	CTAG	2 cut(s)	1655, 1775
FspI	TGCGCA	1 cut(s)	1908
GlaI	GCGC	2 cut(s)	1908, 2084
GluI	GCNGC	4 cut(s)	117, 152, 273, 1943
GsuI	CTGGAG	1 cut(s)	2096
HaeII	RGCGCY	1 cut(s)	2086
HaeIII	GGCC	4 cut(s)	125, 825, 1311, 1942
HapII	CCGG	7 cut(s)	35, 46, 98, 122, 226, 1166, 2109
HhaI	GCGC	2 cut(s)	1909, 2085
Hin6I	GCGC	2 cut(s)	1907, 2083
HinP1I	GCGC	2 cut(s)	1907, 2083
HincII	GTYRAC	2 cut(s)	325, 1248
HindII	GTYRAC	2 cut(s)	325, 1248
HindIII	AAGCTT	3 cut(s)	1259, 1274, 1877
HpaI	GTTAAC	1 cut(s)	325
HpaII	CCGG	7 cut(s)	35, 46, 98, 122, 226, 1166, 2109
HphI	GGTGA	6 cut(s)	97, 215, 695, 825, 1025, 1803
Hpy166II	GTNNAC	7 cut(s)	325, 458, 667, 1248, 1781, 1918, 2219
Hpy188III	TCNNGA	8 cut(s)	417, 896, 1171, 1433, 1640, 1721, 1865, 2075
Hpy8I	GTNNAC	7 cut(s)	325, 458, 667, 1248, 1781, 1918, 2219
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	6 cut(s)	230, 1049, 1205, 1439, 1527, 1841
HpyCH4III	ACNGT	5 cut(s)	445, 451, 701, 1270, 1490
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 1031, 1631, 1939, 2091, 2100
HspAI	GCGC	2 cut(s)	1907, 2083
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	2 cut(s)	685, 1279
KspAI	GTTAAC	1 cut(s)	325
LmnI	GCTCC	5 cut(s)	179, 366, 923, 2080, 2100
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	8 cut(s)	799, 958, 980, 1132, 1534, 1942, 2041, 2052
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	2 cut(s)	1655, 1775
MaeIII	GTNAC	4 cut(s)	445, 831, 1108, 1627
MbiI	CCGCTC	3 cut(s)	154, 1064, 2143
MboII	GAAGA	9 cut(s)	94, 259, 537, 570, 1679, 1709, 1736, 1963, 2173
MfeI	CAATTG	2 cut(s)	753, 1842
MflI	RGATCY	5 cut(s)	228, 583, 635, 928, 1345
MhlI	GDGCHC	2 cut(s)	949, 2208
MlyI	GAGTC	3 cut(s)	32, 197, 1253
MmeI	TCCRAC	2 cut(s)	861, 1186
Mph1103I	ATGCAT	2 cut(s)	389, 973
MroXI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
MseI	TTAA	3 cut(s)	324, 1670, 2046
MspA1I	CMGCKG	1 cut(s)	2138
MspI	CCGG	7 cut(s)	35, 46, 98, 122, 226, 1166, 2109
MspR9I	CCNGG	8 cut(s)	122, 172, 630, 640, 1547, 2109, 2110, 2227
MunI	CAATTG	2 cut(s)	753, 1842
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	5 cut(s)	172, 630, 640, 1547, 2227
MwoI	GCNNNNNNNGC	6 cut(s)	122, 1031, 1631, 1939, 2091, 2100
NciI	CCSGG	3 cut(s)	122, 2109, 2110
NlaIV	GGNNCC	7 cut(s)	80, 181, 373, 427, 478, 512, 990
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	831, 1627
NsbI	TGCGCA	1 cut(s)	1908
NsiI	ATGCAT	2 cut(s)	389, 973
PaeR7I	CTCGAG	1 cut(s)	40
PagI	TCATGA	2 cut(s)	1432, 1864
PaqCI	CACCTGC	1 cut(s)	592
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	1577
PfoI	TCCNGGA	1 cut(s)	638
PinAI	ACCGGT	1 cut(s)	1165
PkrI	GCNGC	4 cut(s)	118, 153, 274, 1944
PleI	GAGTC	3 cut(s)	32, 197, 1252
PpsI	GAGTC	3 cut(s)	32, 197, 1252
PpuMI	RGGWCCY	2 cut(s)	79, 989
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	2046
PsiI	TTATAA	1 cut(s)	1080
Psp124BI	GAGCTC	2 cut(s)	949, 2208
Psp5II	RGGWCCY	2 cut(s)	79, 989
Psp6I	CCWGG	5 cut(s)	170, 628, 638, 1545, 2225
PspGI	CCWGG	5 cut(s)	170, 628, 638, 1545, 2225
PspN4I	GGNNCC	7 cut(s)	80, 181, 373, 427, 478, 512, 990
PspPI	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
PspPPI	RGGWCCY	2 cut(s)	79, 989
PspXI	VCTCGAGB	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	987
PstNI	CAGNNNCTG	1 cut(s)	1631
PsuI	RGATCY	5 cut(s)	228, 583, 635, 928, 1345
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	2138
RsaI	GTAC	5 cut(s)	409, 427, 1297, 1540, 2024
RsaNI	GTAC	5 cut(s)	408, 426, 1296, 1539, 2023
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SacI	GAGCTC	2 cut(s)	949, 2208
SaqAI	TTAA	3 cut(s)	324, 1670, 2046
SatI	GCNGC	4 cut(s)	117, 152, 273, 1943
Sau96I	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
ScaI	AGTACT	2 cut(s)	1540, 2024
SchI	GAGTC	3 cut(s)	32, 197, 1253
ScrFI	CCNGG	8 cut(s)	122, 172, 630, 640, 1547, 2109, 2110, 2227
SduI	GDGCHC	2 cut(s)	949, 2208
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	8 cut(s)	799, 958, 980, 1132, 1534, 1942, 2041, 2052
SfcI	CTRYAG	2 cut(s)	614, 983
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	4 cut(s)	48, 79, 989, 1781
SlaI	CTCGAG	1 cut(s)	40
SmaI	CCCGGG	1 cut(s)	2110
SmlI	CTYRAG	4 cut(s)	40, 469, 1638, 1928
SmoI	CTYRAG	4 cut(s)	40, 469, 1638, 1928
SspI	AATATT	1 cut(s)	1219
SspMI	CTAG	2 cut(s)	1655, 1775
SstI	GAGCTC	2 cut(s)	949, 2208
StyD4I	CCNGG	8 cut(s)	120, 170, 628, 638, 1545, 2107, 2108, 2225
StyI	CCWWGG	1 cut(s)	1774
TaaI	ACNGT	5 cut(s)	445, 451, 701, 1270, 1490
TaqI	TCGA	7 cut(s)	15, 41, 72, 788, 1060, 1852, 1962
TatI	WGTACW	2 cut(s)	1538, 2022
TauI	GCSGC	3 cut(s)	154, 275, 1945
Tru1I	TTAA	3 cut(s)	324, 1670, 2046
Tru9I	TTAA	3 cut(s)	324, 1670, 2046
TscAI	CASTG	6 cut(s)	526, 669, 987, 1495, 1636, 2061
TseFI	GTSAC	2 cut(s)	831, 1627
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	831, 1627
TspGWI	ACGGA	5 cut(s)	192, 223, 253, 505, 1715
TspMI	CCCGGG	1 cut(s)	2108
TspRI	CASTG	6 cut(s)	526, 669, 987, 1495, 1636, 2061
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	1577
VpaK11BI	GGWCC	4 cut(s)	48, 79, 989, 1781
VspI	ATTAAT	1 cut(s)	2046
XapI	RAATTY	3 cut(s)	537, 1553, 1816
XhoI	CTCGAG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	2108
XmaJI	CCTAGG	1 cut(s)	1774
XmnI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
XspI	CTAG	2 cut(s)	1655, 1775
ZrmI	AGTACT	2 cut(s)	1540, 2024
Zsp2I	ATGCAT	2 cut(s)	389, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.