Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8237259.1

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Reverse (-)

275 .. 589

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8237259.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgaggttcaacttcgacttggaggaaactaaaccggactcgagccggtccgccacccccaaagacgaagtcgaatgggtcctactccacaaccatccggtcttcacctccaccgcaggcccggcccaccagcccaccgacgattctccgccgctcagaaacctcttagcctgggacggagcctctcgcctttacttctgggactccgatgacctctgccttcaccggatctccgtccgcctcggcgagcctgagccgacctccgtcttcgccgcttcgccctccaaggtttcatcgctcttttgccctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

104

Amino Acids

11.67

Weight (kDa)

4.98

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	6 cut(s)	51, 114, 149, 152, 238, 273
AclWI	GGATC	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	170
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	118, 123
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspS9I	GGNCC	4 cut(s)	48, 79, 119, 124
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	97, 215
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	48, 79
BbsI	GAAGAC	2 cut(s)	94, 259
BccI	CCATC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	122
BisI	GCNGC	2 cut(s)	152, 273
BlsI	GCNGC	2 cut(s)	153, 274
Bme1390I	CCNGG	2 cut(s)	122, 172
Bme18I	GGWCC	2 cut(s)	48, 79
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	4 cut(s)	48, 79, 119, 124
BmiI	GGNNCC	2 cut(s)	80, 181
BmrFI	CCNGG	2 cut(s)	122, 172
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	2 cut(s)	94, 259
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu10I	CCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	171, 241, 285
BsaWI	WCCGGW	3 cut(s)	34, 97, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bse118I	RCCGGY	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	171, 241, 285
BseGI	GGATG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	169, 243
BshFI	GGCC	2 cut(s)	120, 125
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	5 cut(s)	35, 46, 98, 122, 226
BslFI	GGGAC	2 cut(s)	188, 215
BsmFI	GGGAC	2 cut(s)	188, 215
BsnI	GGCC	2 cut(s)	120, 125
BsoBI	CYCGRG	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	6 cut(s)	51, 114, 149, 152, 238, 273
BspANI	GGCC	2 cut(s)	120, 125
BspCNI	CTCAG	2 cut(s)	168, 244
BspLI	GGNNCC	2 cut(s)	80, 181
BspPI	GGATC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	171, 241, 285
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	118, 248
BstDEI	CTNAG	4 cut(s)	155, 166, 252, 309
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	172
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	120, 170
BstV2I	GAAGAC	2 cut(s)	94, 259
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	120, 125
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	118, 248
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	4 cut(s)	48, 79, 119, 124
CpoI	CGGWCCG	1 cut(s)	48
CspI	CGGWCCG	1 cut(s)	48
CviJI	RGCY	8 cut(s)	45, 120, 125, 133, 170, 182, 250, 256
CviKI_1	RGCY	8 cut(s)	45, 120, 125, 133, 170, 182, 250, 256
DdeI	CTNAG	4 cut(s)	155, 166, 252, 309
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
EciI	GGCGGA	3 cut(s)	40, 138, 227
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	48, 79
Eco88I	CYCGRG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaqI	GGGAC	2 cut(s)	188, 215
Fnu4HI	GCNGC	2 cut(s)	152, 273
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	152, 273
GluI	GCNGC	2 cut(s)	152, 273
HaeIII	GGCC	2 cut(s)	120, 125
HapII	CCGG	5 cut(s)	35, 46, 98, 122, 226
HinfI	GANTC	3 cut(s)	38, 143, 203
HpaII	CCGG	5 cut(s)	35, 46, 98, 122, 226
HphI	GGTGA	2 cut(s)	97, 215
Hpy188I	TCNGA	2 cut(s)	158, 208
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	4 cut(s)	155, 166, 252, 309
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	179
MalI	GATC	1 cut(s)	230
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	1 cut(s)	228
MboII	GAAGA	2 cut(s)	94, 259
MflI	RGATCY	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	32, 197
MnlI	CCTC	8 cut(s)	16, 118, 173, 193, 224, 251, 271, 292
MspI	CCGG	5 cut(s)	35, 46, 98, 122, 226
MspR9I	CCNGG	2 cut(s)	122, 172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	228
NlaIV	GGNNCC	2 cut(s)	80, 181
NmeAIII	GCCGAG	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	143
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	153, 274
PleI	GAGTC	2 cut(s)	32, 197
PpsI	GAGTC	2 cut(s)	32, 197
PpuMI	RGGWCCY	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	80, 181
PspPI	GGNCC	4 cut(s)	48, 79, 119, 124
PspPPI	RGGWCCY	1 cut(s)	79
PspXI	VCTCGAGB	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	228
PsyI	GACNNNGTC	1 cut(s)	68
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SatI	GCNGC	2 cut(s)	152, 273
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	4 cut(s)	48, 79, 119, 124
SchI	GAGTC	2 cut(s)	32, 197
ScrFI	CCNGG	2 cut(s)	122, 172
SetI	ASST	6 cut(s)	8, 110, 165, 216, 263, 291
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	48, 79
SlaI	CTCGAG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SsiI	CCGC	6 cut(s)	51, 114, 149, 152, 238, 273
StyD4I	CCNGG	2 cut(s)	120, 170
StyI	CCWWGG	1 cut(s)	285
TaqI	TCGA	3 cut(s)	15, 41, 72
TauI	GCSGC	2 cut(s)	154, 275
TfiI	GAWTC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	3 cut(s)	192, 223, 253
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	48, 79
XhoI	CTCGAG	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.