Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Reverse (-)

16400455 .. 16405369

Gene Structure 4915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16990.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGAGGTACAACTTCGACCTGCAGGCAACGGAACCGGAGCCGGGGCGGTCTCCGACGCCCCAAAGAGACGAAGTGGAGTGGGTCCAGCTGCAGAACCACCCGGTCTTCTCCTGCTCCGCCGCCGGTCCGGTCCACGACTCGACCGCGGCTCGAGCGCCCAGAAATCTCTTGGCCTGGGACGGAGCCTCTCGGCTTTACTTCTGGGACTCCGATAAGCTCTGCCTTCACCGGATCTCCATCCGGCTGGGCGAACCCGACCCGACTTCCGTCATCGCTTCTTCACCTTCCAAGGTATTGCAAACTGATGTAAAGCTCGACTTTGCGGTTCACAAAATCTCAATCAATAGGAATGGATCAGCATTGCTTCTTTCTGGTTCGGGTGGTCTCTGCGTTATGTATCTTTATGGGCGGACTTCCAACAAAGACAATGCAACCATTTGCAGGACTGTAACTGTTGGTTCACAAATCTACTTAAGAGGAAACAATCTCATACGTGTACTGCAAGTTTCATGGCATCCTAACAGTGACACCCACCTGGGAATTCTTTCTTCTGATTCAGTTTTCAGAATATTTGATTTGTCTTCAGATCTTATTCAACCAGAGCAAGAATACTATCTACAGCCTGTGCAACCAGGTCGATCCAGGAATGCGACATCAATTTGCCCAGTTGACTTTTCATTTGGGAGTGAACACCTGTGGGATTCGTTTAGTGTTTTCATTTTGTTCAACGATGGTTCAATTTACATCCTTTGTCCCGTTGTACCATTTGGAAGTGCCTACAAATGGGAATCCATTGTAGAGATACATAATGATGCTCAGACATTTGGCCTGAAGTCAGCCAATTCAGTGGCTGTTAGTAACTCGAATCTAGCTATTTCTTGGTTGGAAGCAACATTTCCAGCAATCACAAACCAAGAAACAGAAGGATCAGATCCATATGTGATAAAAGCTCATCCGTATGCTATATTTGATGCCTCACTCTCACTGCAGGGACCTCTGAGGAAAGTGTGTCATGGTGAGGATGAAGAAGATTTGGCCTTCCGGGGTGCAGAATGTGAAGGTGGAGCAGTCAGTCTTCTTTATAATTTAGTCTTCAAAGACTCAATTCTGGTGACTGCCTGGAGTGGTGGGCAATTGCAAATAGATGCTATGGCTGATGAAATCCAACCGTTGTGGAATGCTGGCAGCCCACCTCGACTTCGTGTTGATTCCCACGATCATATTCTTGGTCTTGCAATGATTTGTGAGCCAACCCCAGGCAAGCTTTCACCTGTGAAGCTTGATCAACCTCTTGATAGTACTCTTTGGTTGGGACTTCCTCCCCCTCTTTTGAGGTTGGCTATTGTGGATCTGGCTTTGCCTAGGAAAGCAAAGAGTGGTTCTCTTATTATGATGTTTACTGATCCGCTGATGCCGGAAAGAATATACACCCTTCATGATGGAGGGTTAGATTCAATAGTGTTGCATTATCTTCCATTTACAAGTCAGATCAGTGGCAAGAACGAGACTATGAGAACTCCTTCTGTGCATCCTGTTCTAAGCACATGCCAGGGAGAAGTCCCCTCACAATCTCCACTTTCCGGTTTTGTGTCATTATCAGATTCATTTGGGTGTTCCTGGATTGTGGGACTCACTGTTTCGCGAGAATGTATAGTGCTGGAGATGAAGACTTGGAACCTGTTACTGCCTCATCAAGTTGATACGGAGAACAAATCTCTTTGCCTGGAAGAACCAAAAGAAAAAGATATGCCAGATCTTATAAGCAAAGAACTACTAGTTGGACCTAAGGTGGTTCTTCTTCCTCAGAGCTCACCAAGTTTACGTTCTCTTTCTGCTGATTCTATTGAAGGTCGATCAATGCTTCATGAGTACTTCAGAAGCTTTCATGAAAATTATGCGGAGTATGCATATAAGGTTTACTTTGAACTCAAGCATCATGGACCCATCTTGAAGAGGATAATTGATGACCAGCATGCTCGCCTAGGTAATGCACAACAGAGGCTTTTGCAAGTTGAGGAGAAACAATCAAAATTGGAGGACAGAATTGACAGTGCGTTCAAGATGCAAAATCTTCTGCAGGAGCGCTTGAAACGTTTGAGGGACTTGCCAGGGCCTCATAAGAAACCACTGTCCAGAGCTGAGCGAGAGTTCAAGTCAGAGCTTGACCACTTCTCCGAAGTTGAATTGGATGCATTGCGTTCTTCCATTAATGCTGTAACTGCAAGGTTAAAAAGGCACACACAATCGCCAAAGGGCAATGCATCAAACCAACGTAGGCTGGTGGCAAAGGGGAAAGATCCTGTGCAAGAATCTCAAGTCTCCCAGCTGAAATCCTCACTTGAGAAACTTTCACTGCTCAATAGTGAAAATTCGAAAAAGGTTAAGCTTGTTGAATCTGCATTGAAAAGTCGGGAAACCAGCAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

810

Amino Acids

90.15

Weight (kDa)

6.2

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1083, 1760
Acc36I	ACCTGC	1 cut(s)	27
AccII	CGCG	2 cut(s)	146, 1642
AciI	CCGC	9 cut(s)	46, 117, 120, 144, 146, 323, 409, 1406, 1898
AclI	AACGTT	1 cut(s)	2092
AclWI	GGATC	8 cut(s)	239, 361, 633, 926, 934, 1356, 1397, 2291
AcsI	RAATTY	2 cut(s)	540, 2368
AcuI	CTGAAG	3 cut(s)	567, 851, 1858
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	5 cut(s)	8, 498, 762, 1300, 1871
AfeI	AGCGCT	1 cut(s)	2084
AfiI	CCNNNNNNNGG	5 cut(s)	41, 441, 783, 1256, 1580
AflII	CTTAAG	1 cut(s)	472
AflIII	ACRYGT	1 cut(s)	493
AhlI	ACTAGT	1 cut(s)	1774
AjuI	GAANNNNNNNTTGG	4 cut(s)	1761, 1793, 1807, 1839
Alw21I	GWGCWC	1 cut(s)	1811
Alw26I	GTCTC	5 cut(s)	54, 60, 389, 1499, 2323
AlwI	GGATC	8 cut(s)	239, 361, 633, 926, 934, 1356, 1397, 2291
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	1 cut(s)	150
Aor51HI	AGCGCT	1 cut(s)	2084
AoxI	GGCC	4 cut(s)	171, 826, 1035, 2111
ApeKI	GCWGC	2 cut(s)	88, 1185
ApoI	RAATTY	2 cut(s)	540, 2368
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
AseI	ATTAAT	1 cut(s)	2208
Asp700I	GAANNNNTTC	2 cut(s)	544, 1519
AspA2I	CCTAGG	2 cut(s)	1361, 1981
AspLEI	GCGC	2 cut(s)	157, 2085
AspS9I	GGNCC	7 cut(s)	82, 125, 130, 992, 1781, 1940, 2111
AsuC2I	CCSGG	3 cut(s)	42, 101, 1043
AsuHPI	GGTGA	6 cut(s)	218, 273, 1028, 1123, 1260, 1803
AsuII	TTCGAA	1 cut(s)	2372
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	6 cut(s)	82, 125, 130, 992, 1781, 1940
AvrII	CCTAGG	2 cut(s)	1361, 1981
AxyI	CCTNAGG	1 cut(s)	1785
BanII	GRGCYC	1 cut(s)	1811
BbsI	GAAGAC	5 cut(s)	97, 573, 1067, 1084, 1673
Bbv12I	GWGCWC	1 cut(s)	1811
BbvI	GCAGC	2 cut(s)	75, 1197
BccI	CCATC	4 cut(s)	245, 725, 1433, 1952
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BclI	TGATCA	1 cut(s)	1282
BcnI	CCSGG	3 cut(s)	42, 101, 1043
BcoDI	GTCTC	5 cut(s)	54, 60, 389, 1499, 2323
BcuI	ACTAGT	1 cut(s)	1774
BfaI	CTAG	4 cut(s)	869, 1362, 1775, 1982
BfmI	CTRYAG	5 cut(s)	20, 89, 617, 986, 2075
BfoI	RGCGCY	2 cut(s)	158, 2086
BfrI	CTTAAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	27
BglII	AGATCT	2 cut(s)	586, 1753
BisI	GCNGC	4 cut(s)	89, 120, 147, 1186
BlnI	CCTAGG	2 cut(s)	1361, 1981
BlpI	GCTNAGC	1 cut(s)	2139
BlsI	GCNGC	4 cut(s)	90, 121, 148, 1187
BmcAI	AGTACT	2 cut(s)	1300, 1871
Bme18I	GGWCC	6 cut(s)	82, 125, 130, 992, 1781, 1940
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	7 cut(s)	82, 125, 130, 992, 1781, 1940, 2111
BmiI	GGNNCC	7 cut(s)	33, 39, 83, 184, 993, 1676, 1942
BmrI	ACTGGG	1 cut(s)	659
BmuI	ACTGGG	1 cut(s)	659
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	5 cut(s)	97, 573, 1067, 1084, 1673
BplI	GAGNNNNNCTC	2 cut(s)	1366, 1398
BpmI	CTGGAG	2 cut(s)	1141, 1679
Bpu1102I	GCTNAGC	1 cut(s)	2139
Bpu14I	TTCGAA	1 cut(s)	2372
BpuEI	CTTGAG	3 cut(s)	1913, 2298, 2360
BpuMI	CCSGG	3 cut(s)	42, 101, 1043
BsaAI	YACGTR	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	2 cut(s)	54, 389
BsaWI	WCCGGW	4 cut(s)	34, 127, 228, 1580
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 2156, 2186
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 441, 783, 1256, 1580
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	665
Bse21I	CCTNAGG	1 cut(s)	1785
Bse3DI	GCAATG	4 cut(s)	359, 1242, 2192, 2263
Bse8I	GATNNNNATC	1 cut(s)	236
BseGI	GGATG	7 cut(s)	237, 514, 744, 952, 1027, 1528, 2194
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	5 cut(s)	41, 441, 783, 1256, 1580
BseMI	GCAATG	4 cut(s)	359, 1242, 2192, 2263
BseMII	CTCAG	4 cut(s)	830, 989, 1817, 2130
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	2030
BseXI	GCAGC	2 cut(s)	75, 1197
BseYI	CCCAGC	2 cut(s)	244, 2322
BsgI	GTGCAG	1 cut(s)	1068
Bsh1236I	CGCG	2 cut(s)	146, 1642
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	4 cut(s)	173, 828, 1037, 2113
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	1811
BsiHKCI	CYCGRG	1 cut(s)	150
BslFI	GGGAC	8 cut(s)	191, 218, 738, 1005, 1326, 1544, 1641, 2114
BslI	CCNNNNNNNGG	5 cut(s)	41, 441, 783, 1256, 1580
BsmAI	GTCTC	5 cut(s)	54, 60, 389, 1499, 2323
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	8 cut(s)	191, 218, 738, 1005, 1326, 1544, 1641, 2114
BsmI	GAATGC	2 cut(s)	652, 1183
BsnI	GGCC	4 cut(s)	173, 828, 1037, 2113
Bso31I	GGTCTC	2 cut(s)	54, 389
BsoBI	CYCGRG	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	2372
Bsp1286I	GDGCHC	1 cut(s)	1811
Bsp1720I	GCTNAGC	1 cut(s)	2139
Bsp68I	TCGCGA	1 cut(s)	1642
BspACI	CCGC	9 cut(s)	46, 117, 120, 144, 146, 323, 409, 1406, 1898
BspANI	GGCC	4 cut(s)	173, 828, 1037, 2113
BspCNI	CTCAG	4 cut(s)	829, 990, 1816, 2131
BspFNI	CGCG	2 cut(s)	146, 1642
BspHI	TCATGA	3 cut(s)	1435, 1864, 1885
BspLI	GGNNCC	7 cut(s)	33, 39, 83, 184, 993, 1676, 1942
BspMAI	CTGCAG	4 cut(s)	24, 93, 990, 2079
BspMI	ACCTGC	1 cut(s)	27
BspPI	GGATC	8 cut(s)	239, 361, 633, 926, 934, 1356, 1397, 2291
BspT104I	TTCGAA	1 cut(s)	2372
BspTI	CTTAAG	1 cut(s)	472
BspTNI	GGTCTC	2 cut(s)	54, 389
BsrDI	GCAATG	4 cut(s)	359, 1242, 2192, 2263
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	122
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	3 cut(s)	288, 1361, 1981
Bst4CI	ACNGT	7 cut(s)	448, 454, 524, 1170, 1636, 2051, 2130
Bst6I	CTCTTC	1 cut(s)	1946
BstACI	GRCGYC	1 cut(s)	56
BstAFI	CTTAAG	1 cut(s)	472
BstBAI	YACGTR	1 cut(s)	494
BstBI	TTCGAA	1 cut(s)	2372
BstC8I	GCNNGC	5 cut(s)	24, 1183, 1262, 1974, 1978
BstDEI	CTNAG	6 cut(s)	816, 998, 1538, 1785, 1803, 2139
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	7 cut(s)	237, 514, 744, 952, 1027, 1528, 2194
BstFNI	CGCG	2 cut(s)	146, 1642
BstH2I	RGCGCY	2 cut(s)	158, 2086
BstHHI	GCGC	2 cut(s)	157, 2085
BstMAI	GTCTC	5 cut(s)	54, 60, 389, 1499, 2323
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 1904, 2219
BstNSI	RCATGY	2 cut(s)	1548, 1976
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSFI	CTRYAG	5 cut(s)	20, 89, 617, 986, 2075
BstUI	CGCG	2 cut(s)	146, 1642
BstV1I	GCAGC	2 cut(s)	75, 1197
BstV2I	GAAGAC	5 cut(s)	97, 573, 1067, 1084, 1673
BstX2I	RGATCY	6 cut(s)	231, 586, 931, 1348, 1753, 2296
BstXI	CCANNNNNNTGG	2 cut(s)	244, 847
BstYI	RGATCY	6 cut(s)	231, 586, 931, 1348, 1753, 2296
Bsu36I	CCTNAGG	1 cut(s)	1785
BsuRI	GGCC	4 cut(s)	173, 828, 1037, 2113
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	256
BtsCI	GGATG	7 cut(s)	237, 514, 744, 952, 1027, 1528, 2194
BtsI	GCAGTG	2 cut(s)	983, 2351
BtsIMutI	CAGTG	8 cut(s)	529, 852, 983, 1498, 1632, 2056, 2126, 2351
BtuMI	TCGCGA	1 cut(s)	1642
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	5 cut(s)	24, 1183, 1262, 1974, 1978
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	3 cut(s)	1435, 1864, 1885
CfoI	GCGC	2 cut(s)	157, 2085
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	7 cut(s)	82, 125, 130, 992, 1781, 1940, 2111
Cfr42I	CCGCGG	1 cut(s)	147
CpoI	CGGWCCG	1 cut(s)	125
CseI	GACGC	1 cut(s)	64
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	5 cut(s)	7, 497, 761, 1299, 1870
CspCI	CAANNNNNGTGG	2 cut(s)	1154, 1189
CspI	CGGWCCG	1 cut(s)	125
CviAII	CATG	8 cut(s)	510, 1013, 1436, 1545, 1865, 1886, 1937, 1973
CviQI	GTAC	5 cut(s)	7, 497, 761, 1299, 1870
DdeI	CTNAG	6 cut(s)	816, 998, 1538, 1785, 1803, 2139
Eam1104I	CTCTTC	1 cut(s)	1946
EarI	CTCTTC	1 cut(s)	1946
EciI	GGCGGA	2 cut(s)	106, 424
Ecl136II	GAGCTC	1 cut(s)	1809
Eco130I	CCWWGG	3 cut(s)	288, 1361, 1981
Eco24I	GRGCYC	1 cut(s)	1811
Eco31I	GGTCTC	2 cut(s)	54, 389
Eco47I	GGWCC	6 cut(s)	82, 125, 130, 992, 1781, 1940
Eco47III	AGCGCT	1 cut(s)	2084
Eco53kI	GAGCTC	1 cut(s)	1809
Eco57I	CTGAAG	3 cut(s)	567, 851, 1858
Eco81I	CCTNAGG	1 cut(s)	1785
Eco88I	CYCGRG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	1809
EcoO109I	RGGNCCY	2 cut(s)	992, 2111
EcoRI	GAATTC	1 cut(s)	540
EcoT14I	CCWWGG	3 cut(s)	288, 1361, 1981
EcoT22I	ATGCAT	3 cut(s)	1909, 2194, 2263
EcoT38I	GRGCYC	1 cut(s)	1811
ErhI	CCWWGG	3 cut(s)	288, 1361, 1981
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	8 cut(s)	513, 1016, 1439, 1548, 1868, 1889, 1940, 1976
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 1904, 1936
FaqI	GGGAC	8 cut(s)	191, 218, 738, 1005, 1326, 1544, 1641, 2114
FatI	CATG	8 cut(s)	509, 1012, 1435, 1544, 1864, 1885, 1936, 1972
FauNDI	CATATG	1 cut(s)	937
FbaI	TGATCA	1 cut(s)	1282
Fnu4HI	GCNGC	4 cut(s)	89, 120, 147, 1186
FokI	GGATG	7 cut(s)	224, 501, 731, 939, 1034, 1515, 2201
FriOI	GRGCYC	1 cut(s)	1811
Fsp4HI	GCNGC	4 cut(s)	89, 120, 147, 1186
FspBI	CTAG	4 cut(s)	869, 1362, 1775, 1982
GlaI	GCGC	2 cut(s)	156, 2084
GluI	GCNGC	4 cut(s)	89, 120, 147, 1186
GsaI	CCCAGC	2 cut(s)	248, 2326
GsuI	CTGGAG	2 cut(s)	1141, 1679
HaeII	RGCGCY	2 cut(s)	158, 2086
HaeIII	GGCC	4 cut(s)	173, 828, 1037, 2113
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	157, 2085
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	8 cut(s)	513, 1016, 1439, 1548, 1868, 1889, 1940, 1976
Hin6I	GCGC	2 cut(s)	155, 2083
HinP1I	GCGC	2 cut(s)	155, 2083
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	4 cut(s)	1262, 1277, 1879, 2384
HphI	GGTGA	6 cut(s)	218, 273, 1028, 1123, 1260, 1803
Hpy166II	GTNNAC	9 cut(s)	133, 328, 461, 497, 670, 689, 1398, 1820, 1918
Hpy188III	TCNNGA	9 cut(s)	1292, 1436, 1641, 1865, 1886, 1948, 2059, 2133, 2411
Hpy8I	GTNNAC	9 cut(s)	133, 328, 461, 497, 670, 689, 1398, 1820, 1918
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	8 cut(s)	233, 294, 917, 1048, 1052, 1442, 1530, 1841
HpyCH4III	ACNGT	7 cut(s)	448, 454, 524, 1170, 1636, 2051, 2130
HpyCH4IV	ACGT	4 cut(s)	493, 1822, 2092, 2272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 1904, 2219
HpyF3I	CTNAG	6 cut(s)	816, 998, 1538, 1785, 1803, 2139
HpySE526I	ACGT	4 cut(s)	493, 1822, 2092, 2272
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	8 cut(s)	513, 1016, 1439, 1548, 1868, 1889, 1940, 1976
HspAI	GCGC	2 cut(s)	155, 2083
Ksp22I	TGATCA	1 cut(s)	1282
KspI	CCGCGG	1 cut(s)	147
LmnI	GCTCC	5 cut(s)	37, 119, 182, 1064, 2080
Lsp1109I	GCAGC	2 cut(s)	75, 1197
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	4 cut(s)	869, 1362, 1775, 1982
MaeII	ACGT	4 cut(s)	493, 1822, 2092, 2272
MaeIII	GTNAC	6 cut(s)	448, 524, 857, 1111, 1680, 2215
MfeI	CAATTG	1 cut(s)	1133
MflI	RGATCY	6 cut(s)	231, 586, 931, 1348, 1753, 2296
MhlI	GDGCHC	1 cut(s)	1811
MlyI	GAGTC	4 cut(s)	131, 200, 1094, 1623
MmeI	TCCRAC	5 cut(s)	77, 441, 864, 1189, 1759
Mph1103I	ATGCAT	3 cut(s)	1909, 2194, 2263
MroXI	GAANNNNTTC	2 cut(s)	544, 1519
MseI	TTAA	5 cut(s)	473, 2208, 2228, 2382, 2428
MslI	CAYNNNNRTG	3 cut(s)	810, 957, 1609
MspA1I	CMGCKG	4 cut(s)	88, 146, 1408, 2326
MspCI	CTTAAG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	1133
Mva1269I	GAATGC	2 cut(s)	652, 1183
MvnI	CGCG	2 cut(s)	146, 1642
MwoI	GCNNNNNNNGC	3 cut(s)	152, 1904, 2219
NciI	CCSGG	3 cut(s)	42, 101, 1043
NdeI	CATATG	1 cut(s)	937
NlaIII	CATG	8 cut(s)	513, 1016, 1439, 1548, 1868, 1889, 1940, 1976
NlaIV	GGNNCC	7 cut(s)	33, 39, 83, 184, 993, 1676, 1942
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	524, 1111
NruI	TCGCGA	1 cut(s)	1642
NsiI	ATGCAT	3 cut(s)	1909, 2194, 2263
NspI	RCATGY	2 cut(s)	1548, 1976
NspV	TTCGAA	1 cut(s)	2372
PaeI	GCATGC	1 cut(s)	1976
PaeR7I	CTCGAG	1 cut(s)	150
PagI	TCATGA	3 cut(s)	1435, 1864, 1885
PctI	GAATGC	2 cut(s)	652, 1183
PdmI	GAANNNNTTC	2 cut(s)	544, 1519
PfoI	TCCNGGA	2 cut(s)	641, 1616
PkrI	GCNGC	4 cut(s)	90, 121, 148, 1187
PleI	GAGTC	4 cut(s)	131, 200, 1094, 1623
PpsI	GAGTC	4 cut(s)	131, 200, 1094, 1623
Ppu21I	YACGTR	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	992
PshAI	GACNNNNGTC	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	2208
PsiI	TTATAA	2 cut(s)	1083, 1760
Psp124BI	GAGCTC	1 cut(s)	1811
Psp1406I	AACGTT	1 cut(s)	2092
Psp5II	RGGWCCY	1 cut(s)	992
PspFI	CCCAGC	2 cut(s)	244, 2322
PspN4I	GGNNCC	7 cut(s)	33, 39, 83, 184, 993, 1676, 1942
PspPI	GGNCC	7 cut(s)	82, 125, 130, 992, 1781, 1940, 2111
PspPPI	RGGWCCY	1 cut(s)	992
PspXI	VCTCGAGB	1 cut(s)	150
PstI	CTGCAG	4 cut(s)	24, 93, 990, 2079
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	6 cut(s)	231, 586, 931, 1348, 1753, 2296
PvuII	CAGCTG	2 cut(s)	88, 2326
RruI	TCGCGA	1 cut(s)	1642
RsaI	GTAC	5 cut(s)	8, 498, 762, 1300, 1871
RsaNI	GTAC	5 cut(s)	7, 497, 761, 1299, 1870
RseI	CAYNNNNRTG	3 cut(s)	810, 957, 1609
Rsr2I	CGGWCCG	1 cut(s)	125
RsrII	CGGWCCG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	1811
SacII	CCGCGG	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	473, 2208, 2228, 2382, 2428
SatI	GCNGC	4 cut(s)	89, 120, 147, 1186
Sau96I	GGNCC	7 cut(s)	82, 125, 130, 992, 1781, 1940, 2111
SbfI	CCTGCAGG	1 cut(s)	24
ScaI	AGTACT	2 cut(s)	1300, 1871
SchI	GAGTC	4 cut(s)	131, 200, 1094, 1623
SdaI	CCTGCAGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	1811
SexAI	ACCWGGT	1 cut(s)	631
SfcI	CTRYAG	5 cut(s)	20, 89, 617, 986, 2075
Sfr274I	CTCGAG	1 cut(s)	150
Sfr303I	CCGCGG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	2372
SgrBI	CCGCGG	1 cut(s)	147
SinI	GGWCC	6 cut(s)	82, 125, 130, 992, 1781, 1940
SlaI	CTCGAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	3 cut(s)	810, 957, 1609
SmlI	CTYRAG	5 cut(s)	150, 472, 1928, 2313, 2339
SmoI	CTYRAG	5 cut(s)	150, 472, 1928, 2313, 2339
SpeI	ACTAGT	1 cut(s)	1774
SphI	GCATGC	1 cut(s)	1976
Sse8387I	CCTGCAGG	1 cut(s)	24
SsiI	CCGC	9 cut(s)	46, 117, 120, 144, 146, 323, 409, 1406, 1898
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	4 cut(s)	869, 1362, 1775, 1982
SstI	GAGCTC	1 cut(s)	1811
StyI	CCWWGG	3 cut(s)	288, 1361, 1981
TaaI	ACNGT	7 cut(s)	448, 454, 524, 1170, 1636, 2051, 2130
TaiI	ACGT	4 cut(s)	496, 1825, 2095, 2275
TaqI	TCGA	9 cut(s)	15, 140, 151, 315, 637, 863, 1195, 1852, 2372
TatI	WGTACW	3 cut(s)	496, 1298, 1869
TauI	GCSGC	2 cut(s)	122, 149
Tru1I	TTAA	5 cut(s)	473, 2208, 2228, 2382, 2428
Tru9I	TTAA	5 cut(s)	473, 2208, 2228, 2382, 2428
TscAI	CASTG	8 cut(s)	529, 852, 990, 1498, 1639, 2056, 2133, 2358
TseFI	GTSAC	2 cut(s)	524, 1111
TseI	GCWGC	2 cut(s)	88, 1185
Tsp45I	GTSAC	2 cut(s)	524, 1111
TspGWI	ACGGA	5 cut(s)	44, 195, 256, 945, 1718
TspRI	CASTG	8 cut(s)	529, 852, 990, 1498, 1639, 2056, 2133, 2358
Vha464I	CTTAAG	1 cut(s)	472
VpaK11BI	GGWCC	6 cut(s)	82, 125, 130, 992, 1781, 1940
VspI	ATTAAT	1 cut(s)	2208
XapI	RAATTY	2 cut(s)	540, 2368
XceI	RCATGY	2 cut(s)	1548, 1976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	150
XmaJI	CCTAGG	2 cut(s)	1361, 1981
XmnI	GAANNNNTTC	2 cut(s)	544, 1519
XspI	CTAG	4 cut(s)	869, 1362, 1775, 1982
ZrmI	AGTACT	2 cut(s)	1300, 1871
Zsp2I	ATGCAT	3 cut(s)	1909, 2194, 2263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.