Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007206

Physical Location & Seq

Genomic Coordinates Reverse (-)

57953726 .. 57959687

Gene Structure 5962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG356100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGAGGTTCAACTTCGACTTGAAGGAAACTAAACCGGAGCCGAGCAGGTCCGCCACCCCCAAAGACGAAGTCGAATGGGTCCCACTCCACCACCATCCGGTCTTCACCTCCACTGCCGCCCCGGCCCACCAGCCCACCGACGATTCTCCGCCGCTCAGAAACCTCTTAGCCTGGGACGGAGCCTCTCGCCTTTACTTCTGGGACTCCGATGACCTCTGCCTTCACCGGATCTCCGTCCGCCTCGGCGAGCCTGAGCCGACCTCCGTCTTCGCCGCTTCGCCCTCCAAGATACTGAAACCAGATGTGAAGCTGAACTTTGCTGTTAACAAAGTCTCCATCAATAGAAACGGGACGGCGATGCTCCTTTACGGTTCCGATGGTCTATGCATTATGTATCTTTACGGGCGTACTTCCTCCAGAGATGGTACCACAATTTGCAGGACTGTTACTGTTGGTTCACAAATATACTTGAGTGGAACCAATGTCATACGGATACTGCAAGTTTCATGGCACCCTTGCAGTGATACTCATCTGGGAATTCTTTCTTCTGATTCAGTTTTCAGATTATTTCATTTGTCTTCAGATCTTATTCAACCAGAGCAGGCGTATTATCTACAGCCTGTGCAACCAGGTAGATCCAGGAATGCCACATCAATTTGCCCAGTGGACTTTTCTTTTGGTGGTGATCACTTGTGGGACTGTTTTAGTGGACCTTTGAGGAAAGTATCTCGTGGTGAGGATGAAGCGGATTCAGCATTTCGGGGTGCAGAATGTGAAGGTCGAGCGGTTAGCTTTCTTTATAATTTAGTCAGCAAAGATTCAATTCTTGTGACTGCTTGGAGTGGTGGGCAACTGCAAATAGATGCTCTGGCTGATGAAATCCAACCGGTCTGGAATGTTGGTTGTCCTCCTCGCCTTCGTGTTGATTCCCATGACAATATTCATGGTCTTGCAATGATCTGTGAGTCAACCCCAGATAAGCTTTCAACTGTGAAGCTTGATCAACCACTTGATAGTACTCTTTGGTTGGGCCATCCTCCCCCTCTGTTGAGACTGGCTATTGTGGATCTGGCTCTGCCTAAGAAAGCAGGAAGTGATTCTCTTGTTATGATGTTTATTGATCCCCTCATGCTGGAAAGAATATACACCCTTCATGATGGAGGGATAGATTCAATAGTGTTGCATTATCTCCCATTTACAAGTCAGAACAGTGGCAAGAATGAGACCATGAGAACTCCTTCTGTGCATCCTGTCCTGAGTACTTGCCAGGGAGAATTCTCCTCACACTCTCCACTTTCTGGTTTTGTGTCATTATCAGATTCATTTGGGTATTCATGGATAGTGGCAGTCACTGCTTCTCAAGAATGTATTGTGCTAGAGATGAAAACCTTAAACCTGTTGCTTCCTCTTCATGTTGATACGGAGAAAAAATCCATTCTTCCAGAAGACCCAAAAGAGAAAGATAAATCAGATATTATCATAAGCAAAGAACTCCTAGGTGGACCTAAGGTGGTTCTTGTTCCTCAGACATCACCAAATTTGCGTTCTGTTTCTGCTGATTCAATTGAAGGTCGATCAATGCTTCATGAATACTTCAAGCTTTTCCATGAAAATTATGTGGAGTATGCACACAAGGTTTACTTTGAACTCAAGCATCATGGGCCGCACTTGAAGAGGATAATTGATGACCAACATGGTCGTTTAGGTGGGGCAAAGCAGAGGCTTTTGCAAGTTGAGGAAAAGTACTCGAACTTGGAACACCGCATTAATGATGCAGTGAAGATGCAGAATCATCTGGAGGAGCGCCTAAAACGCTTGCGGAGCTTACCCGGGGTTCATAAGAAACCACTTTCCACAGCTGAGCGGGACTTCAAATCTCAGCTCGACCAGTTTTCCGGGGTTGAGTTGGATGCATTACGCTCTACTGTTAATGCGTTAACTGCAAGGATGAAAAGACACGGACAATCACCTAAGGCCATTGTATCAAACCAAAAGAAGCTGGTATCAAGGAGGAAGGATCTTGTGCAAGAGTCACAAATCTCCCAGTTGAAATCGTGCCTAGAGAAACTATCACTGGTCAATAGTGAGAATTCGAAAAAGGTTAAGATTGTGGAATCTGCATTAAGAAGTCAAGAAAGCAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

715

Amino Acids

79.88

Weight (kDa)

6.99

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup88	PF10168	29 - 227	6.4e-18	Nuclear pore component
Nup88	PF10168	369 - 705	8.6e-06	Nuclear pore component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05680
fragaria_vesca	FvH4_7g24380
malus_domestica	MD01G1152200.v1.1 MD07G1220900.v1.1 MD07G1221200.v1.1
prunus_persica	Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1 Prupe.2G249200_v2.0.a1
pyrus_communis	pycom01g16990
rosa_chinensis	RchiOBHm_Chr1g0370081
rosa_laevigata	RLG00000027076
rosa_multiflora	Rmu_co8237259.1_g000001 Rmu_sc0005056.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286840 Rroxscaffold_4G00287190
rosa_rugosa	Rorug01G0353700
rosa_samantha	Rh1AG362400 Rh1BG325600 Rh1CG338900 Rh1DG356100
rosa_wichuraiana	Rw1G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	801
Acc36I	ACCTGC	1 cut(s)	36
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	425, 510
AccB7I	CCANNNNNTGG	1 cut(s)	1298
AccBSI	CCGCTC	3 cut(s)	154, 785, 1864
AclWI	GGATC	5 cut(s)	236, 630, 1074, 1115, 2025
AcsI	RAATTY	4 cut(s)	537, 1274, 1537, 2089
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	5 cut(s)	409, 427, 1018, 1261, 1745
AfiI	CCNNNNNNNGG	3 cut(s)	97, 1132, 1298
AgeI	ACCGGT	1 cut(s)	886
AjnI	CCWGG	4 cut(s)	170, 628, 638, 1266
AjuI	GAANNNNNNNTTGG	2 cut(s)	1528, 1560
AluBI	AGCT	9 cut(s)	310, 792, 982, 997, 1600, 1824, 1859, 1882, 1999
AluI	AGCT	9 cut(s)	310, 792, 982, 997, 1600, 1824, 1859, 1882, 1999
Alw26I	GTCTC	3 cut(s)	337, 1045, 1217
AlwI	GGATC	5 cut(s)	236, 630, 1074, 1115, 2025
AlwNI	CAGNNNCTG	1 cut(s)	1352
Ama87I	CYCGRG	1 cut(s)	1829
AoxI	GGCC	4 cut(s)	123, 1030, 1661, 1974
ApeKI	GCWGC	1 cut(s)	2139
ApoI	RAATTY	4 cut(s)	537, 1274, 1537, 2089
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 659, 691
AseI	ATTAAT	1 cut(s)	1767
AsiGI	ACCGGT	1 cut(s)	886
Asp700I	GAANNNNTTC	3 cut(s)	541, 1096, 1237
Asp718I	GGTACC	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	1495
AspLEI	GCGC	1 cut(s)	1806
AspS9I	GGNCC	7 cut(s)	48, 79, 124, 710, 1030, 1502, 1661
AsuC2I	CCSGG	4 cut(s)	122, 1830, 1831, 1897
AsuHPI	GGTGA	6 cut(s)	97, 215, 695, 746, 1524, 1959
AsuII	TTCGAA	1 cut(s)	2093
AvaI	CYCGRG	1 cut(s)	1829
AvaII	GGWCC	4 cut(s)	48, 79, 710, 1502
AvrII	CCTAGG	1 cut(s)	1495
AxyI	CCTNAGG	2 cut(s)	1506, 1971
BanI	GGYRCC	2 cut(s)	425, 510
BauI	CACGAG	1 cut(s)	729
BbsI	GAAGAC	4 cut(s)	94, 259, 570, 1452
BccI	CCATC	6 cut(s)	102, 344, 371, 416, 1041, 1151
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	4 cut(s)	172, 630, 640, 1268
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	2 cut(s)	685, 1000
BcnI	CCSGG	4 cut(s)	122, 1830, 1831, 1897
BcoDI	GTCTC	3 cut(s)	337, 1045, 1217
BfaI	CTAG	3 cut(s)	1376, 1496, 2060
BfmI	CTRYAG	1 cut(s)	614
BfoI	RGCGCY	1 cut(s)	1807
BfuAI	ACCTGC	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	122
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	5 cut(s)	117, 152, 273, 1664, 2140
BlnI	CCTAGG	1 cut(s)	1495
BlpI	GCTNAGC	1 cut(s)	1860
BlsI	GCNGC	5 cut(s)	118, 153, 274, 1665, 2141
BmcAI	AGTACT	3 cut(s)	1018, 1261, 1745
Bme1390I	CCNGG	8 cut(s)	122, 172, 630, 640, 1268, 1830, 1831, 1897
Bme18I	GGWCC	4 cut(s)	48, 79, 710, 1502
BmeT110I	CYCGRG	1 cut(s)	1829
BmgT120I	GGNCC	7 cut(s)	48, 79, 124, 710, 1030, 1502, 1661
BmiI	GGNNCC	8 cut(s)	39, 80, 81, 181, 373, 427, 478, 512
BmrFI	CCNGG	8 cut(s)	122, 172, 630, 640, 1268, 1830, 1831, 1897
BmrI	ACTGGG	2 cut(s)	656, 2038
BmsI	GCATC	7 cut(s)	348, 853, 1255, 1663, 1762, 1773, 1900
BmuI	ACTGGG	2 cut(s)	656, 2038
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	4 cut(s)	94, 259, 570, 1452
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	2 cut(s)	400, 1817
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	1860
Bpu14I	TTCGAA	1 cut(s)	2093
BpuEI	CTTGAG	3 cut(s)	490, 1344, 1634
BpuMI	CCSGG	4 cut(s)	122, 1830, 1831, 1897
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	1217
BsaJI	CCNNGG	8 cut(s)	120, 171, 241, 1267, 1495, 1829, 1830, 1896
BsaWI	WCCGGW	4 cut(s)	34, 97, 225, 886
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 317, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 1132, 1298
Bse118I	RCCGGY	1 cut(s)	886
Bse1I	ACTGG	5 cut(s)	662, 1059, 1888, 2044, 2079
Bse21I	CCTNAGG	2 cut(s)	1506, 1971
Bse3DI	GCAATG	1 cut(s)	960
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	4 cut(s)	172, 630, 640, 1268
BseDI	CCNNGG	8 cut(s)	120, 171, 241, 1267, 1495, 1829, 1830, 1896
BseGI	GGATG	6 cut(s)	94, 745, 1033, 1246, 1915, 1953
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	97, 1132, 1298
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	6 cut(s)	169, 243, 1247, 1538, 1851, 1892
BseNI	ACTGG	5 cut(s)	662, 1059, 1888, 2044, 2079
BseRI	GAGGAG	3 cut(s)	900, 1270, 1814
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	4 cut(s)	125, 1032, 1663, 1976
BshNI	GGYRCC	2 cut(s)	425, 510
BshTI	ACCGGT	1 cut(s)	886
BsiHKCI	CYCGRG	1 cut(s)	1829
BsiSI	CCGG	7 cut(s)	35, 98, 122, 226, 887, 1830, 1896
BslFI	GGGAC	6 cut(s)	65, 188, 215, 364, 710, 1880
BslI	CCNNNNNNNGG	3 cut(s)	97, 1132, 1298
BsmAI	GTCTC	3 cut(s)	337, 1045, 1217
BsmFI	GGGAC	6 cut(s)	65, 188, 215, 364, 710, 1880
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	4 cut(s)	125, 1032, 1663, 1976
Bso31I	GGTCTC	1 cut(s)	1217
BsoBI	CYCGRG	1 cut(s)	1829
Bsp119I	TTCGAA	1 cut(s)	2093
Bsp1720I	GCTNAGC	1 cut(s)	1860
BspANI	GGCC	4 cut(s)	125, 1032, 1663, 1976
BspCNI	CTCAG	6 cut(s)	168, 244, 1248, 1537, 1852, 1891
BspHI	TCATGA	2 cut(s)	1153, 1585
BspLI	GGNNCC	8 cut(s)	39, 80, 81, 181, 373, 427, 478, 512
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	5 cut(s)	236, 630, 1074, 1115, 2025
BspT104I	TTCGAA	1 cut(s)	2093
BspT107I	GGYRCC	2 cut(s)	425, 510
BspTNI	GGTCTC	1 cut(s)	1217
BsrBI	CCGCTC	3 cut(s)	154, 785, 1864
BsrDI	GCAATG	1 cut(s)	960
BsrFI	RCCGGY	1 cut(s)	886
BsrI	ACTGG	5 cut(s)	662, 1059, 1888, 2044, 2079
BssAI	RCCGGY	1 cut(s)	886
BssECI	CCNNGG	8 cut(s)	120, 171, 241, 1267, 1495, 1829, 1830, 1896
BssSI	CACGAG	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	1495
Bst2BI	CACGAG	1 cut(s)	729
Bst2UI	CCWGG	4 cut(s)	172, 630, 640, 1268
Bst4CI	ACNGT	7 cut(s)	371, 445, 451, 701, 991, 1211, 1927
Bst6I	CTCTTC	2 cut(s)	1413, 1667
BstAPI	GCANNNNNTGC	1 cut(s)	1352
BstBI	TTCGAA	1 cut(s)	2093
BstC8I	GCNNGC	3 cut(s)	248, 603, 1817
BstF5I	GGATG	6 cut(s)	94, 745, 1033, 1246, 1915, 1953
BstH2I	RGCGCY	1 cut(s)	1807
BstHHI	GCGC	1 cut(s)	1806
BstMAI	GTCTC	3 cut(s)	337, 1045, 1217
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 752, 1352, 1660, 1812, 1821, 1940
BstNI	CCWGG	4 cut(s)	172, 630, 640, 1268
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	8 cut(s)	120, 170, 628, 638, 1266, 1828, 1829, 1895
BstSFI	CTRYAG	1 cut(s)	614
BstV2I	GAAGAC	4 cut(s)	94, 259, 570, 1452
BstX2I	RGATCY	5 cut(s)	228, 583, 635, 1066, 2017
BstYI	RGATCY	5 cut(s)	228, 583, 635, 1066, 2017
Bsu36I	CCTNAGG	2 cut(s)	1506, 1971
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	4 cut(s)	125, 1032, 1663, 1976
BtgZI	GCGATG	1 cut(s)	371
BtsCI	GGATG	6 cut(s)	94, 745, 1033, 1246, 1915, 1953
BtsI	GCAGTG	4 cut(s)	111, 526, 1350, 1782
BtsIMutI	CAGTG	7 cut(s)	111, 526, 669, 1216, 1350, 1782, 2072
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	248, 603, 1817
CaiI	CAGNNNCTG	1 cut(s)	1352
CciI	TCATGA	2 cut(s)	1153, 1585
CfoI	GCGC	1 cut(s)	1806
Cfr10I	RCCGGY	1 cut(s)	886
Cfr13I	GGNCC	7 cut(s)	48, 79, 124, 710, 1030, 1502, 1661
Cfr9I	CCCGGG	1 cut(s)	1829
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	5 cut(s)	408, 426, 1017, 1260, 1744
CspAI	ACCGGT	1 cut(s)	886
CviQI	GTAC	5 cut(s)	408, 426, 1017, 1260, 1744
Eam1104I	CTCTTC	2 cut(s)	1413, 1667
EarI	CTCTTC	2 cut(s)	1413, 1667
EciI	GGCGGA	3 cut(s)	40, 138, 227
Eco130I	CCWWGG	1 cut(s)	1495
Eco31I	GGTCTC	1 cut(s)	1217
Eco47I	GGWCC	4 cut(s)	48, 79, 710, 1502
Eco57I	CTGAAG	1 cut(s)	564
Eco81I	CCTNAGG	2 cut(s)	1506, 1971
Eco88I	CYCGRG	1 cut(s)	1829
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRI	GAATTC	3 cut(s)	537, 1274, 2089
EcoRII	CCWGG	4 cut(s)	170, 628, 638, 1266
EcoT14I	CCWWGG	1 cut(s)	1495
EcoT22I	ATGCAT	2 cut(s)	389, 1915
ErhI	CCWWGG	1 cut(s)	1495
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 1625, 1657
FaqI	GGGAC	6 cut(s)	65, 188, 215, 364, 710, 1880
FauI	CCCGC	1 cut(s)	1857
FauNDI	CATATG	1 cut(s)	2144
FbaI	TGATCA	2 cut(s)	685, 1000
Fnu4HI	GCNGC	5 cut(s)	117, 152, 273, 1664, 2140
FokI	GGATG	6 cut(s)	81, 752, 1020, 1233, 1922, 1960
Fsp4HI	GCNGC	5 cut(s)	117, 152, 273, 1664, 2140
FspBI	CTAG	3 cut(s)	1376, 1496, 2060
GlaI	GCGC	1 cut(s)	1805
GluI	GCNGC	5 cut(s)	117, 152, 273, 1664, 2140
GsuI	CTGGAG	2 cut(s)	400, 1817
HaeII	RGCGCY	1 cut(s)	1807
HaeIII	GGCC	4 cut(s)	125, 1032, 1663, 1976
HapII	CCGG	7 cut(s)	35, 98, 122, 226, 887, 1830, 1896
HhaI	GCGC	1 cut(s)	1806
Hin6I	GCGC	1 cut(s)	1804
HinP1I	GCGC	1 cut(s)	1804
HincII	GTYRAC	3 cut(s)	325, 969, 1938
HindII	GTYRAC	3 cut(s)	325, 969, 1938
HindIII	AAGCTT	3 cut(s)	980, 995, 1598
HpaI	GTTAAC	2 cut(s)	325, 1938
HpaII	CCGG	7 cut(s)	35, 98, 122, 226, 887, 1830, 1896
HphI	GGTGA	6 cut(s)	97, 215, 695, 746, 1524, 1959
Hpy166II	GTNNAC	8 cut(s)	325, 458, 667, 710, 969, 1502, 1639, 1938
Hpy188III	TCNNGA	9 cut(s)	417, 892, 1154, 1255, 1361, 1442, 1586, 1796, 2132
Hpy8I	GTNNAC	8 cut(s)	325, 458, 667, 710, 969, 1502, 1639, 1938
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	8 cut(s)	16, 230, 770, 926, 1160, 1248, 1562, 2008
HpyCH4III	ACNGT	7 cut(s)	371, 445, 451, 701, 991, 1211, 1927
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 752, 1352, 1660, 1812, 1821, 1940
HspAI	GCGC	1 cut(s)	1804
KflI	GGGWCCC	1 cut(s)	79
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	2 cut(s)	685, 1000
KspAI	GTTAAC	2 cut(s)	325, 1938
LmnI	GCTCC	5 cut(s)	37, 179, 366, 1801, 1821
LweI	GCATC	7 cut(s)	348, 853, 1255, 1663, 1762, 1773, 1900
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	3 cut(s)	1376, 1496, 2060
MaeIII	GTNAC	4 cut(s)	445, 829, 1348, 2031
MbiI	CCGCTC	3 cut(s)	154, 785, 1864
MboII	GAAGA	9 cut(s)	94, 259, 537, 570, 1400, 1430, 1457, 1684, 1792
MfeI	CAATTG	1 cut(s)	1563
MflI	RGATCY	5 cut(s)	228, 583, 635, 1066, 2017
MlyI	GAGTC	3 cut(s)	197, 974, 2039
MmeI	TCCRAC	2 cut(s)	907, 1887
Mph1103I	ATGCAT	2 cut(s)	389, 1915
MroXI	GAANNNNTTC	3 cut(s)	541, 1096, 1237
MseI	TTAA	7 cut(s)	324, 1391, 1767, 1929, 1937, 2103, 2123
MspA1I	CMGCKG	1 cut(s)	1859
MspI	CCGG	7 cut(s)	35, 98, 122, 226, 887, 1830, 1896
MspR9I	CCNGG	8 cut(s)	122, 172, 630, 640, 1268, 1830, 1831, 1897
MunI	CAATTG	1 cut(s)	1563
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	4 cut(s)	172, 630, 640, 1268
MwoI	GCNNNNNNNGC	7 cut(s)	122, 752, 1352, 1660, 1812, 1821, 1940
NciI	CCSGG	4 cut(s)	122, 1830, 1831, 1897
NdeI	CATATG	1 cut(s)	2144
NlaIV	GGNNCC	8 cut(s)	39, 80, 81, 181, 373, 427, 478, 512
NmeAIII	GCCGAG	2 cut(s)	66, 222
NmuCI	GTSAC	3 cut(s)	829, 1348, 2031
NsiI	ATGCAT	2 cut(s)	389, 1915
NspV	TTCGAA	1 cut(s)	2093
PagI	TCATGA	2 cut(s)	1153, 1585
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	3 cut(s)	541, 1096, 1237
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	1298
PfoI	TCCNGGA	1 cut(s)	638
PinAI	ACCGGT	1 cut(s)	886
PkrI	GCNGC	5 cut(s)	118, 153, 274, 1665, 2141
PleI	GAGTC	3 cut(s)	197, 973, 2038
PpsI	GAGTC	3 cut(s)	197, 973, 2038
PpuMI	RGGWCCY	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	1767
PsiI	TTATAA	1 cut(s)	801
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	4 cut(s)	170, 628, 638, 1266
PspGI	CCWGG	4 cut(s)	170, 628, 638, 1266
PspN4I	GGNNCC	8 cut(s)	39, 80, 81, 181, 373, 427, 478, 512
PspPI	GGNCC	7 cut(s)	48, 79, 124, 710, 1030, 1502, 1661
PspPPI	RGGWCCY	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	1352
PsuI	RGATCY	5 cut(s)	228, 583, 635, 1066, 2017
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	1859
RsaI	GTAC	5 cut(s)	409, 427, 1018, 1261, 1745
RsaNI	GTAC	5 cut(s)	408, 426, 1017, 1260, 1744
SaqAI	TTAA	7 cut(s)	324, 1391, 1767, 1929, 1937, 2103, 2123
SatI	GCNGC	5 cut(s)	117, 152, 273, 1664, 2140
Sau96I	GGNCC	7 cut(s)	48, 79, 124, 710, 1030, 1502, 1661
ScaI	AGTACT	3 cut(s)	1018, 1261, 1745
SchI	GAGTC	3 cut(s)	197, 974, 2039
ScrFI	CCNGG	8 cut(s)	122, 172, 630, 640, 1268, 1830, 1831, 1897
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	7 cut(s)	348, 853, 1255, 1663, 1762, 1773, 1900
SfcI	CTRYAG	1 cut(s)	614
SfuI	TTCGAA	1 cut(s)	2093
SinI	GGWCC	4 cut(s)	48, 79, 710, 1502
SmaI	CCCGGG	1 cut(s)	1831
SmlI	CTYRAG	3 cut(s)	469, 1359, 1649
SmoI	CTYRAG	3 cut(s)	469, 1359, 1649
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	3 cut(s)	1376, 1496, 2060
StyD4I	CCNGG	8 cut(s)	120, 170, 628, 638, 1266, 1828, 1829, 1895
StyI	CCWWGG	1 cut(s)	1495
TaaI	ACNGT	7 cut(s)	371, 445, 451, 701, 991, 1211, 1927
TaqI	TCGA	7 cut(s)	15, 72, 781, 1573, 1748, 1884, 2093
TatI	WGTACW	3 cut(s)	1016, 1259, 1743
TauI	GCSGC	4 cut(s)	119, 154, 275, 1666
Tru1I	TTAA	7 cut(s)	324, 1391, 1767, 1929, 1937, 2103, 2123
Tru9I	TTAA	7 cut(s)	324, 1391, 1767, 1929, 1937, 2103, 2123
TscAI	CASTG	7 cut(s)	118, 526, 669, 1216, 1357, 1782, 2079
TseFI	GTSAC	3 cut(s)	829, 1348, 2031
TseI	GCWGC	1 cut(s)	2139
Tsp45I	GTSAC	3 cut(s)	829, 1348, 2031
TspGWI	ACGGA	6 cut(s)	192, 223, 253, 505, 1436, 1974
TspMI	CCCGGG	1 cut(s)	1829
TspRI	CASTG	7 cut(s)	118, 526, 669, 1216, 1357, 1782, 2079
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	1298
VpaK11BI	GGWCC	4 cut(s)	48, 79, 710, 1502
VspI	ATTAAT	1 cut(s)	1767
XapI	RAATTY	4 cut(s)	537, 1274, 1537, 2089
XmaI	CCCGGG	1 cut(s)	1829
XmaJI	CCTAGG	1 cut(s)	1495
XmnI	GAANNNNTTC	3 cut(s)	541, 1096, 1237
XspI	CTAG	3 cut(s)	1376, 1496, 2060
ZrmI	AGTACT	3 cut(s)	1018, 1261, 1745
Zsp2I	ATGCAT	2 cut(s)	389, 1915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.