Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006160

Physical Location & Seq

Genomic Coordinates Forward (+)

1888250 .. 1889914

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGCTGAAGGTTGTGTATCGTAAGGTCTCCGATTACATCTGTTACGATCTGAAAGAAATCGTCTTACCTTCATCACTTCCCGATCCTCCTCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATTCCTCGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCCTGAACTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAAAGAGGCAGAGAACGAGCCCTCTGTTTTGGAAGATCTTGCGGTAGCTGCAAGAGGTGGCATGGAGACTTTAAGGCCTGCTTTACATCGTCTTTACATGACACGAGCTTCTAATTATAAAGATGCTCTTACAAGCTTTATTAAAGGTTACCATGAGGGTCTGCAGCAAGTTATGCAGAATAAAGCAGAGTCTGAAGCCCCAGCAGATGAAGCTGACAAGTCCAAAAAGACTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.53

Weight (kDa)

9.18

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06240
fragaria_vesca	FvH4_2g10910
malus_domestica	MD05G1051100.v1.1 MD07G1268900.v1.1 MD10G1058500.v1.1 MD13G1200900.v1.1
prunus_persica	Prupe.8G077900_v2.0.a1
pyrus_communis	pycom05g04320 pycom10g04520
rosa_chinensis	RchiOBHm_Chr2g0174001 RchiOBHm_Chr2g0174011 RchiOBHm_Chr6g0269071
rosa_laevigata	RLG00000013886
rosa_multiflora	Rmu_sc0004350.1_g000002 Rmu_sc0032469.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199050
rosa_rugosa	Rorug05G0301400 Rorug06G0044700 Rorug06G0044700
rosa_samantha	Rh2CG628600 Rh6AG165300 Rh6BG170700 Rh6CG164200 Rh6DG155800
rosa_wichuraiana	Rw2G053640 Rw6G014220 Rw6G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AciI	CCGC	2 cut(s)	109, 293
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	2 cut(s)	29, 465
AgsI	TTSAA	2 cut(s)	145, 156
AjiI	CACGTC	1 cut(s)	97
AluBI	AGCT	7 cut(s)	7, 152, 174, 299, 359, 387, 464
AluI	AGCT	7 cut(s)	7, 152, 174, 299, 359, 387, 464
Alw26I	GTCTC	2 cut(s)	34, 311
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	167, 299, 415
AspS9I	GGNCC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	3 cut(s)	125, 137, 354
BbvI	GCAGC	3 cut(s)	154, 286, 427
BcoDI	GTCTC	2 cut(s)	34, 311
BfmI	CTRYAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	4 cut(s)	109, 168, 300, 416
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	4 cut(s)	110, 169, 301, 417
Bme18I	GGWCC	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	191
BmsI	GCATC	2 cut(s)	220, 364
Bpu1102I	GCTNAGC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	34
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	154, 286, 427
BseYI	CCCAGC	2 cut(s)	174, 451
BshFI	GGCC	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	34, 311
BsnI	GGCC	1 cut(s)	328
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	49, 85, 286
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	109, 293
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	417
BspPI	GGATC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	34
BssMI	GATC	3 cut(s)	49, 85, 286
BssSI	CACGAG	3 cut(s)	125, 137, 354
Bst2BI	CACGAG	3 cut(s)	125, 137, 354
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	172, 330
BstDEI	CTNAG	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	52, 88, 289
BstMAI	GTCTC	2 cut(s)	34, 311
BstMBI	GATC	3 cut(s)	49, 85, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 299, 424, 461
BstPI	GGTNACC	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	413
BstV1I	GCAGC	3 cut(s)	154, 286, 427
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	172, 330
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	191
CviAII	CATG	3 cut(s)	313, 349, 404
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	3 cut(s)	51, 87, 288
DpnII	GATC	3 cut(s)	49, 85, 286
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	29, 465
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	3 cut(s)	316, 352, 407
FaiI	YATR	7 cut(s)	165, 188, 314, 350, 369, 405, 425
FalI	AAGNNNNNCTT	4 cut(s)	316, 348, 363, 395
FatI	CATG	3 cut(s)	312, 348, 403
Fnu4HI	GCNGC	4 cut(s)	109, 168, 300, 416
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	4 cut(s)	109, 168, 300, 416
GluI	GCNGC	4 cut(s)	109, 168, 300, 416
GsaI	CCCAGC	2 cut(s)	178, 455
HaeIII	GGCC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	316, 352, 407
HindIII	AAGCTT	2 cut(s)	150, 385
HinfI	GANTC	2 cut(s)	132, 440
Hpy188I	TCNGA	3 cut(s)	34, 54, 445
Hpy188III	TCNNGA	2 cut(s)	83, 194
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	4, 81, 139
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	4 cut(s)	170, 302, 415, 427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 299, 424, 461
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	316, 352, 407
Kzo9I	GATC	3 cut(s)	49, 85, 286
LpnPI	CCDG	4 cut(s)	160, 207, 342, 465
Lsp1109I	GCAGC	3 cut(s)	154, 286, 427
LweI	GCATC	2 cut(s)	220, 364
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	44, 398
MalI	GATC	3 cut(s)	51, 87, 288
MboI	GATC	3 cut(s)	49, 85, 286
MboII	GAAGA	1 cut(s)	296
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	113, 364
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	7 cut(s)	99, 102, 146, 250, 283, 299, 400
MseI	TTAA	3 cut(s)	102, 323, 393
MwoI	GCNNNNNNNGC	4 cut(s)	257, 299, 424, 461
NdeII	GATC	3 cut(s)	49, 85, 286
NlaIII	CATG	3 cut(s)	316, 352, 407
PceI	AGGCCT	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	110, 169, 301, 417
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	191
PsiI	TTATAA	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	398
PspFI	CCCAGC	2 cut(s)	174, 451
PspPI	GGNCC	1 cut(s)	191
PspPPI	RGGWCCY	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	417
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	102, 323, 393
SatI	GCNGC	4 cut(s)	109, 168, 300, 416
Sau3AI	GATC	3 cut(s)	49, 85, 286
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	2 cut(s)	220, 364
SfcI	CTRYAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	2 cut(s)	113, 364
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	109, 293
StuI	AGGCCT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	99
TasI	AATT	2 cut(s)	113, 364
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	3 cut(s)	102, 323, 393
Tru9I	TTAA	3 cut(s)	102, 323, 393
TseI	GCWGC	3 cut(s)	167, 299, 415
TspDTI	ATGAA	3 cut(s)	17, 63, 474
VpaK11BI	GGWCC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.