Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006160

Physical Location & Seq

Genomic Coordinates Forward (+)

43558640 .. 43559973

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGGTGAGGGTGGTGTGTAGGAAAGTGCGTGATTACATTCGATATGACCTGAAAGAGATCGCGTTTCCGTCATCGCTGCCGGACCCTCCTCATATCAAGAAGCGCCGCAAGCTCACCTGGCACGAGCGCTTCTTGGTGTTGAAGGAGGCTTCTAGGCTTTATGCTGCCAGCTGGGTGCGGGATATTGGTCCTGAGCTGCGGCCTAATGATTATAAGAAGGATGAAGAAAGTGAGAGTGAACCTGGTGGATCAAAGAGCACAACTAAAGACAAAGAGCCCTCAACATTAGAGGATCTTGCTGTGGCTGCTAGAGGAGGAATGGAGACATTAAAGCCCGCTCTGCAACGGATCTACATGACAAGAGCTTCTGCATATAGGGATGCTCTTAAAAGTTTTATCCATGGGTACCAAGAAGGCATTCAGCAAGTCATGGAGAAAAAGGAAGATTCTAAATCCGACCAGGAAAGTGATATACAAAATAAATCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.95

Weight (kDa)

9.19

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06240
fragaria_vesca	FvH4_2g10910
malus_domestica	MD05G1051100.v1.1 MD07G1268900.v1.1 MD10G1058500.v1.1 MD13G1200900.v1.1
prunus_persica	Prupe.8G077900_v2.0.a1
pyrus_communis	pycom05g04320 pycom10g04520
rosa_chinensis	RchiOBHm_Chr2g0174001 RchiOBHm_Chr2g0174011 RchiOBHm_Chr6g0269071
rosa_laevigata	RLG00000013886
rosa_multiflora	Rmu_sc0004350.1_g000002 Rmu_sc0032469.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199050
rosa_rugosa	Rorug05G0301400 Rorug06G0044700 Rorug06G0044700
rosa_samantha	Rh2CG628600 Rh6AG165300 Rh6BG170700 Rh6CG164200 Rh6DG155800
rosa_wichuraiana	Rw2G053640 Rw6G014220 Rw6G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	341
AccII	CGCG	1 cut(s)	65
AciI	CCGC	4 cut(s)	109, 181, 202, 339
AclWI	GGATC	3 cut(s)	259, 303, 359
AfaI	GTAC	1 cut(s)	410
AfeI	AGCGCT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	3 cut(s)	119, 244, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	4 cut(s)	115, 174, 199, 368
AluI	AGCT	4 cut(s)	115, 174, 199, 368
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	3 cut(s)	259, 303, 359
Aor51HI	AGCGCT	1 cut(s)	131
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	4 cut(s)	79, 167, 199, 308
Asp700I	GAANNNNTTC	1 cut(s)	420
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	108, 132
AspS9I	GGNCC	2 cut(s)	85, 191
AsuHPI	GGTGA	2 cut(s)	19, 109
AvaII	GGWCC	2 cut(s)	85, 191
BanI	GGYRCC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	4 cut(s)	66, 154, 186, 295
BciT130I	CCWGG	3 cut(s)	121, 246, 464
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	156, 312
BfoI	RGCGCY	2 cut(s)	109, 133
BisI	GCNGC	6 cut(s)	80, 109, 168, 200, 203, 309
BlsI	GCNGC	6 cut(s)	81, 110, 169, 201, 204, 310
Bme1390I	CCNGG	3 cut(s)	121, 246, 464
Bme18I	GGWCC	2 cut(s)	85, 191
BmgT120I	GGNCC	2 cut(s)	85, 191
BmiI	GGNNCC	2 cut(s)	87, 410
BmrFI	CCNGG	3 cut(s)	121, 246, 464
BmsI	GCATC	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	121, 246, 464
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	229, 388
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	81, 330
BseXI	GCAGC	4 cut(s)	66, 154, 186, 295
BseYI	CCCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	263, 282
Bsp143I	GATC	4 cut(s)	60, 251, 295, 351
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	4 cut(s)	109, 181, 202, 339
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	87, 410
BspPI	GGATC	3 cut(s)	259, 303, 359
BspT107I	GGYRCC	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	4 cut(s)	60, 251, 295, 351
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	3 cut(s)	121, 246, 464
BstC8I	GCNNGC	3 cut(s)	113, 172, 339
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	229, 388
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	2 cut(s)	109, 133
BstHHI	GCGC	2 cut(s)	108, 132
BstKTI	GATC	4 cut(s)	63, 254, 298, 354
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	60, 251, 295, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 121, 308, 343
BstNI	CCWGG	3 cut(s)	121, 246, 464
BstSCI	CCNGG	3 cut(s)	119, 244, 462
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	4 cut(s)	66, 154, 186, 295
BstX2I	RGATCY	2 cut(s)	295, 351
BstYI	RGATCY	2 cut(s)	295, 351
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	403
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	229, 388
Cac8I	GCNNGC	3 cut(s)	113, 172, 339
CfoI	GCGC	2 cut(s)	108, 132
Cfr13I	GGNCC	2 cut(s)	85, 191
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	358, 404, 433
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	4 cut(s)	62, 253, 297, 353
DpnII	GATC	4 cut(s)	60, 251, 295, 351
Eco130I	CCWWGG	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	85, 191
Eco47III	AGCGCT	1 cut(s)	131
EcoRII	CCWGG	3 cut(s)	119, 244, 462
EcoT14I	CCWWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	3 cut(s)	361, 407, 436
FatI	CATG	3 cut(s)	357, 403, 432
FauI	CCCGC	2 cut(s)	174, 346
Fnu4HI	GCNGC	6 cut(s)	80, 109, 168, 200, 203, 309
FokI	GGATG	2 cut(s)	236, 395
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	6 cut(s)	80, 109, 168, 200, 203, 309
FspBI	CTAG	2 cut(s)	156, 312
GlaI	GCGC	2 cut(s)	107, 131
GluI	GCNGC	6 cut(s)	80, 109, 168, 200, 203, 309
GsaI	CCCAGC	1 cut(s)	178
HaeII	RGCGCY	2 cut(s)	109, 133
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	2 cut(s)	108, 132
Hin1II	CATG	3 cut(s)	361, 407, 436
Hin6I	GCGC	2 cut(s)	106, 130
HinP1I	GCGC	2 cut(s)	106, 130
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	19, 109
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	2 cut(s)	100, 194
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	139, 214, 410
HpyCH4V	TGCA	2 cut(s)	346, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 121, 308, 343
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	361, 407, 436
HspAI	GCGC	2 cut(s)	106, 130
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	60, 251, 295, 351
Lsp1109I	GCAGC	4 cut(s)	66, 154, 186, 295
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	2 cut(s)	156, 312
MalI	GATC	4 cut(s)	62, 253, 297, 353
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	4 cut(s)	60, 251, 295, 351
MboII	GAAGA	2 cut(s)	239, 458
MflI	RGATCY	2 cut(s)	295, 351
MhlI	GDGCHC	2 cut(s)	263, 282
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	8 cut(s)	3, 99, 102, 142, 286, 292, 308, 311
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	332, 390
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	3 cut(s)	121, 246, 464
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	3 cut(s)	121, 246, 464
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	112, 121, 308, 343
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	4 cut(s)	60, 251, 295, 351
NlaIII	CATG	3 cut(s)	361, 407, 436
NlaIV	GGNNCC	2 cut(s)	87, 410
PctI	GAATGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	6 cut(s)	81, 110, 169, 201, 204, 310
PsiI	TTATAA	1 cut(s)	216
Psp6I	CCWGG	3 cut(s)	119, 244, 462
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	3 cut(s)	119, 244, 462
PspN4I	GGNNCC	2 cut(s)	87, 410
PspPI	GGNCC	2 cut(s)	85, 191
PsuI	RGATCY	2 cut(s)	295, 351
PvuII	CAGCTG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	332, 390
SatI	GCNGC	6 cut(s)	80, 109, 168, 200, 203, 309
Sau3AI	GATC	4 cut(s)	60, 251, 295, 351
Sau96I	GGNCC	2 cut(s)	85, 191
ScrFI	CCNGG	3 cut(s)	121, 246, 464
SduI	GDGCHC	2 cut(s)	263, 282
SetI	ASST	8 cut(s)	9, 54, 117, 122, 176, 201, 247, 370
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	2 cut(s)	85, 191
SsiI	CCGC	4 cut(s)	109, 181, 202, 339
SspMI	CTAG	2 cut(s)	156, 312
StyD4I	CCNGG	3 cut(s)	119, 244, 462
StyI	CCWWGG	1 cut(s)	403
TaqI	TCGA	1 cut(s)	43
TauI	GCSGC	2 cut(s)	111, 205
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	332, 390
Tru9I	TTAA	2 cut(s)	332, 390
TseI	GCWGC	4 cut(s)	79, 167, 199, 308
TspDTI	ATGAA	2 cut(s)	17, 240
TspGWI	ACGGA	2 cut(s)	60, 364
VpaK11BI	GGWCC	2 cut(s)	85, 191
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	2 cut(s)	156, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.