Prupe.8G077900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0006160
Physical Location & Seq
Forward (+)
11223130 .. 11224898
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G077900.1

Sequence Viewer

Length: 492 bp
ATGAAGGTGAGGGTGGTGTGTAGGAAGCTGTACGATTACGTTCGCTATGATCTGAAAGAGATTGCATTTCCATCTTCGCTGCCAGACCCTCCTCATATCAAGAAGCGCCGCAAGCTCACATGGAATGAGCGGTTCTTGGTGTTGAAGGAGGCTTCTAGGCTGTATGCTGCCAGCTGGGTTCGGGATATTGGTCCTGAACTGCGACCTAATGATTTTAAGGATGAAGAGAGTGAAGATAAACCTGGTAGACCACAGGGCCCGGCTAAAGAGAAAGAACCCTCAACATTAGAGGATCTTGCTGTGGCTGCTAGAGGAGGAATGGAGACATTAAAGCCTGCTCTACAGCGTGTCTACATGACAAGAGCTTCTGCATATAAAGATGCTCTTCAAAGTTTTATACATGGGTACCAAGAAGGAATCCAGCAGGTTATGGAGAAAAAGGAAGATTCTAAATCTGAACAGGAAAGTGATAAGCCTGATAAATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.83

Weight (kDa)

8.84

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 415
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 405
AccBSI CCGCTC 1 cut(s) 130
AccI GTMKAC 2 cut(s) 247, 351
AciI CCGC 2 cut(s) 109, 130
AclWI GGATC 1 cut(s) 300
AfaI GTAC 2 cut(s) 32, 407
AgsI TTSAA 2 cut(s) 145, 389
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 4 cut(s) 28, 115, 174, 365
AluI AGCT 4 cut(s) 28, 115, 174, 365
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 1 cut(s) 300
AoxI GGCC 1 cut(s) 256
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 79, 167, 305
Asp718I GGTACC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 3 cut(s) 191, 256, 257
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 260
BaeI ACNNNNGTAYC 2 cut(s) 389, 422
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 260
BbvI GCAGC 3 cut(s) 66, 154, 292
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 243
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 2 cut(s) 156, 309
BfmI CTRYAG 1 cut(s) 341
BfoI RGCGCY 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 415
BisI GCNGC 4 cut(s) 80, 109, 168, 306
BlsI GCNGC 4 cut(s) 81, 110, 169, 307
Bme1390I CCNGG 2 cut(s) 243, 260
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 3 cut(s) 191, 256, 257
BmiI GGNNCC 2 cut(s) 258, 407
BmrFI CCNGG 2 cut(s) 243, 260
BmsI GCATC 1 cut(s) 370
BpuMI CCSGG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 81, 327
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 3 cut(s) 66, 154, 292
BseYI CCCAGC 1 cut(s) 174
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 405
BsiSI CCGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 1 cut(s) 258
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 49, 292
BspACI CCGC 2 cut(s) 109, 130
BspANI GGCC 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 258, 407
BspMI ACCTGC 1 cut(s) 415
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 405
BsrBI CCGCTC 1 cut(s) 130
BssMI GATC 2 cut(s) 49, 292
Bst2UI CCWGG 1 cut(s) 243
Bst6I CTCTTC 2 cut(s) 219, 390
BstC8I GCNNGC 3 cut(s) 113, 172, 336
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 52, 295
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 49, 292
BstMWI GCNNNNNNNGC 2 cut(s) 112, 305
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 241, 258
BstSFI CTRYAG 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 66, 154, 292
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 226
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 3 cut(s) 113, 172, 336
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 3 cut(s) 191, 256, 257
CsiI ACCWGGT 1 cut(s) 241
Csp6I GTAC 2 cut(s) 31, 406
CviAII CATG 3 cut(s) 120, 355, 401
CviQI GTAC 2 cut(s) 31, 406
DpnI GATC 2 cut(s) 51, 294
DpnII GATC 2 cut(s) 49, 292
Eam1104I CTCTTC 2 cut(s) 219, 390
EarI CTCTTC 2 cut(s) 219, 390
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 260
FaeI CATG 3 cut(s) 123, 358, 404
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 3 cut(s) 119, 354, 400
FblI GTMKAC 2 cut(s) 247, 351
Fnu4HI GCNGC 4 cut(s) 80, 109, 168, 306
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 4 cut(s) 80, 109, 168, 306
FspBI CTAG 2 cut(s) 156, 309
GlaI GCGC 1 cut(s) 107
GluI GCNGC 4 cut(s) 80, 109, 168, 306
GsaI CCCAGC 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 108
Hin1II CATG 3 cut(s) 123, 358, 404
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 2 cut(s) 417, 446
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 248, 352
Hpy188I TCNGA 2 cut(s) 54, 457
Hpy188III TCNNGA 3 cut(s) 100, 182, 194
Hpy8I GTNNAC 2 cut(s) 248, 352
HpyAV CCTTC 2 cut(s) 139, 407
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 65, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 305
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 3 cut(s) 123, 358, 404
HspAI GCGC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 409
Kzo9I GATC 2 cut(s) 49, 292
LguI GCTCTTC 1 cut(s) 390
Lsp1109I GCAGC 3 cut(s) 66, 154, 292
LweI GCATC 1 cut(s) 370
MabI ACCWGGT 1 cut(s) 241
MaeI CTAG 2 cut(s) 156, 309
MaeII ACGT 1 cut(s) 39
MalI GATC 2 cut(s) 51, 294
MbiI CCGCTC 1 cut(s) 130
MboI GATC 2 cut(s) 49, 292
MboII GAAGA 5 cut(s) 66, 236, 245, 377, 455
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 260
MnlI CCTC 8 cut(s) 3, 99, 102, 142, 283, 289, 305, 308
MseI TTAA 3 cut(s) 216, 329, 490
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 243, 260
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 112, 305
NciI CCSGG 1 cut(s) 260
NdeII GATC 2 cut(s) 49, 292
NlaIII CATG 3 cut(s) 123, 358, 404
NlaIV GGNNCC 2 cut(s) 258, 407
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 417, 446
PkrI GCNGC 4 cut(s) 81, 110, 169, 307
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 258, 407
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 3 cut(s) 191, 256, 257
PsuI RGATCY 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 174
RsaI GTAC 2 cut(s) 32, 407
RsaNI GTAC 2 cut(s) 31, 406
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 216, 329, 490
SatI GCNGC 4 cut(s) 80, 109, 168, 306
Sau3AI GATC 2 cut(s) 49, 292
Sau96I GGNCC 3 cut(s) 191, 256, 257
ScrFI CCNGG 2 cut(s) 243, 260
SduI GDGCHC 1 cut(s) 260
SetI ASST 9 cut(s) 9, 30, 42, 117, 176, 208, 244, 367, 429
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 191
SsiI CCGC 2 cut(s) 109, 130
SspMI CTAG 2 cut(s) 156, 309
StyD4I CCNGG 2 cut(s) 241, 258
TaiI ACGT 1 cut(s) 42
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 417, 446
Tru1I TTAA 3 cut(s) 216, 329, 490
Tru9I TTAA 3 cut(s) 216, 329, 490
TseI GCWGC 3 cut(s) 79, 167, 305
TspDTI ATGAA 2 cut(s) 17, 237
VpaK11BI GGWCC 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 247, 351
XspI CTAG 2 cut(s) 156, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.