Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006160

Physical Location & Seq

Genomic Coordinates Reverse (-)

28184528 .. 28186086

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG170700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGGTCAGCGTGGTGTATAGGAAAGTGCGTGATTACATTCGTTATGATCTGAAAGAGATTGCATTTCCATCATCACTGCCGGACCCTCCTCATATCAAGAAACGCCGCAAGCTCACCTGGCATGAGCGGTTTTTGGTGTTGAAGGAGGCTTCTAGGCTTTATGCTGCCAGCTGGGTGCGGGATATTGGTCCTGAACTGCGACCTAATGATTATAAGAAGGATGAAGGAAGTGAGAATGAACCTAGTGGATCAAAGAGCACAACTAAAGACAAAGAACCCTCAACATTAGAGGATCTTGCTGTGGCTGCTAGAGGAGGAATGGAGACATTAAAGCCTGCTCTGCAACGGATCTACATGACAAGAGCTTCTGCATATAGGGATGCTCTTAAAAGTTTTATCCATGGGTACCAAGAAGGCATTCAGCAGGTCGTGGAGAAAAAGGAAGATTCTAAATCCGAACAGGAAAATGATATACAAAATAAATCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.93

Weight (kDa)

9.26

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06240
fragaria_vesca	FvH4_2g10910
malus_domestica	MD05G1051100.v1.1 MD07G1268900.v1.1 MD10G1058500.v1.1 MD13G1200900.v1.1
prunus_persica	Prupe.8G077900_v2.0.a1
pyrus_communis	pycom05g04320 pycom10g04520
rosa_chinensis	RchiOBHm_Chr2g0174001 RchiOBHm_Chr2g0174011 RchiOBHm_Chr6g0269071
rosa_laevigata	RLG00000013886
rosa_multiflora	Rmu_sc0004350.1_g000002 Rmu_sc0032469.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199050
rosa_rugosa	Rorug05G0301400 Rorug06G0044700 Rorug06G0044700
rosa_samantha	Rh2CG628600 Rh6AG165300 Rh6BG170700 Rh6CG164200 Rh6DG155800
rosa_wichuraiana	Rw2G053640 Rw6G014220 Rw6G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	418
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	130
AciI	CCGC	3 cut(s)	109, 130, 181
AclWI	GGATC	3 cut(s)	259, 303, 359
AfaI	GTAC	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	119
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	3 cut(s)	115, 174, 368
AluI	AGCT	3 cut(s)	115, 174, 368
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	3 cut(s)	259, 303, 359
ApeKI	GCWGC	2 cut(s)	167, 308
Asp700I	GAANNNNTTC	1 cut(s)	420
Asp718I	GGTACC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	85, 191
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	85, 191
BanI	GGYRCC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	154, 295
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	3 cut(s)	156, 246, 312
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	3 cut(s)	109, 168, 309
BlsI	GCNGC	3 cut(s)	110, 169, 310
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	2 cut(s)	85, 191
BmgT120I	GGNCC	2 cut(s)	85, 191
BmiI	GGNNCC	2 cut(s)	87, 410
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	229, 388
BseRI	GAGGAG	2 cut(s)	81, 330
BseXI	GCAGC	2 cut(s)	154, 295
BseYI	CCCAGC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	4 cut(s)	49, 251, 295, 351
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	3 cut(s)	109, 130, 181
BspLI	GGNNCC	2 cut(s)	87, 410
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	3 cut(s)	259, 303, 359
BspT107I	GGYRCC	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	4 cut(s)	49, 251, 295, 351
BssT1I	CCWWGG	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	3 cut(s)	113, 172, 339
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	229, 388
BstKTI	GATC	4 cut(s)	52, 254, 298, 354
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	49, 251, 295, 351
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 308, 343
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	154, 295
BstX2I	RGATCY	2 cut(s)	295, 351
BstYI	RGATCY	2 cut(s)	295, 351
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	229, 388
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	3 cut(s)	113, 172, 339
Cfr13I	GGNCC	2 cut(s)	85, 191
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	125, 358, 404
CviJI	RGCY	7 cut(s)	115, 152, 160, 174, 308, 337, 368
CviKI_1	RGCY	7 cut(s)	115, 152, 160, 174, 308, 337, 368
CviQI	GTAC	1 cut(s)	409
DpnI	GATC	4 cut(s)	51, 253, 297, 353
DpnII	GATC	4 cut(s)	49, 251, 295, 351
Eco130I	CCWWGG	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	85, 191
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	3 cut(s)	128, 361, 407
FatI	CATG	3 cut(s)	124, 357, 403
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	109, 168, 309
FokI	GGATG	2 cut(s)	236, 395
Fsp4HI	GCNGC	3 cut(s)	109, 168, 309
FspBI	CTAG	3 cut(s)	156, 246, 312
GluI	GCNGC	3 cut(s)	109, 168, 309
GsaI	CCCAGC	1 cut(s)	178
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	3 cut(s)	128, 361, 407
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	54, 460
Hpy188III	TCNNGA	2 cut(s)	100, 194
HpyAV	CCTTC	4 cut(s)	139, 214, 221, 410
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	3 cut(s)	65, 346, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 308, 343
HpySE526I	ACGT	1 cut(s)	491
Hsp92II	CATG	3 cut(s)	128, 361, 407
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	49, 251, 295, 351
LpnPI	CCDG	9 cut(s)	96, 106, 133, 160, 184, 207, 351, 413, 449
Lsp1109I	GCAGC	2 cut(s)	154, 295
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	3 cut(s)	156, 246, 312
MaeII	ACGT	1 cut(s)	491
MalI	GATC	4 cut(s)	51, 253, 297, 353
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	4 cut(s)	49, 251, 295, 351
MboII	GAAGA	1 cut(s)	458
MflI	RGATCY	2 cut(s)	295, 351
MhlI	GDGCHC	1 cut(s)	263
MnlI	CCTC	7 cut(s)	99, 102, 142, 286, 292, 308, 311
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	332, 390
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	3 cut(s)	121, 308, 343
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	4 cut(s)	49, 251, 295, 351
NlaIII	CATG	3 cut(s)	128, 361, 407
NlaIV	GGNNCC	2 cut(s)	87, 410
PctI	GAATGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	110, 169, 310
Ppu21I	YACGTR	1 cut(s)	492
PsiI	TTATAA	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	87, 410
PspPI	GGNCC	2 cut(s)	85, 191
PsuI	RGATCY	2 cut(s)	295, 351
PvuII	CAGCTG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	332, 390
SatI	GCNGC	3 cut(s)	109, 168, 309
Sau3AI	GATC	4 cut(s)	49, 251, 295, 351
Sau96I	GGNCC	2 cut(s)	85, 191
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	9 cut(s)	9, 117, 122, 176, 208, 247, 370, 432, 494
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	2 cut(s)	85, 191
SsiI	CCGC	3 cut(s)	109, 130, 181
SspMI	CTAG	3 cut(s)	156, 246, 312
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	403
TaiI	ACGT	1 cut(s)	494
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	332, 390
Tru9I	TTAA	2 cut(s)	332, 390
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	2 cut(s)	167, 308
TspDTI	ATGAA	3 cut(s)	17, 240, 255
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	85, 191
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	3 cut(s)	156, 246, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.