Rroxscaffold_7G00199050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006160
Physical Location & Seq
Forward (+)
44913140 .. 44915463
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199050.1

Sequence Viewer

Length: 459 bp
ATGAAGGTGAGGGTGGTGTGTAGGAAAGTGCGTGATTACATTCGATATGATCTGAAAGAGATCGCGTTTCCGTCATCACTGCCAGACCCCCTCATATCAAGAAGCGCCGCAAGCTCACCTGGCACGAGCGCTTCTTGCTGGGTGCGGGATATTGGTCCTGAACTGCGGCCTAATGATTATAAGAAGGATGAAGAAAGTGAGAGTGAACCTGGTGGATCAAAGAGCACAACTAAAGACAAAGAGCCCTCAACATTAGAGGATCTTGCTGTCGCTGCTAGAGGAGGAATGGAGACATTAAAGCCCGCTCTGCAACGGATCTACATGACAAGAGCTTCTGCATATAGGGATGCTCTTAAAAGTTTTATCCATGGGTACCAAGAAGGCATTCAGCAAGTCGTGGAGAAAAAGGAAGATTCTAAATCCGACCAGGAAAGTGATATACAAAATAAATCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.97

Weight (kDa)

6.62

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 305
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 108, 145, 166, 303
AclWI GGATC 3 cut(s) 223, 267, 323
AfaI GTAC 1 cut(s) 374
AfeI AGCGCT 1 cut(s) 130
AjnI CCWGG 3 cut(s) 118, 208, 426
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 2 cut(s) 114, 332
AluI AGCT 2 cut(s) 114, 332
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 3 cut(s) 223, 267, 323
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 384
Asp718I GGTACC 1 cut(s) 372
AspLEI GCGC 2 cut(s) 107, 131
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 19, 108
AvaII GGWCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 246
BauI CACGAG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 259
BciT130I CCWGG 3 cut(s) 120, 210, 428
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 2 cut(s) 108, 132
BisI GCNGC 3 cut(s) 108, 167, 273
BlsI GCNGC 3 cut(s) 109, 168, 274
Bme1390I CCNGG 3 cut(s) 120, 210, 428
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 3 cut(s) 120, 210, 428
BmsI GCATC 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 367
BseBI CCWGG 3 cut(s) 120, 210, 428
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 193, 352
BseRI GAGGAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 259
BseYI CCCAGC 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 284
BsmI GAATGC 1 cut(s) 384
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 227, 246
Bsp143I GATC 5 cut(s) 49, 60, 215, 259, 315
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 4 cut(s) 108, 145, 166, 303
BspANI GGCC 1 cut(s) 169
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 374
BspPI GGATC 3 cut(s) 223, 267, 323
BspT107I GGYRCC 1 cut(s) 372
BsrBI CCGCTC 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 5 cut(s) 49, 60, 215, 259, 315
BssSI CACGAG 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 367
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 3 cut(s) 120, 210, 428
BstC8I GCNNGC 2 cut(s) 112, 303
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 2 cut(s) 193, 352
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 2 cut(s) 108, 132
BstHHI GCGC 2 cut(s) 107, 131
BstKTI GATC 5 cut(s) 52, 63, 218, 262, 318
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 5 cut(s) 49, 60, 215, 259, 315
BstMWI GCNNNNNNNGC 5 cut(s) 111, 120, 135, 272, 307
BstNI CCWGG 3 cut(s) 120, 210, 428
BstSCI CCNGG 3 cut(s) 118, 208, 426
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 259, 315
BstYI RGATCY 2 cut(s) 259, 315
BsuRI GGCC 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 193, 352
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 112, 303
CfoI GCGC 2 cut(s) 107, 131
Cfr13I GGNCC 1 cut(s) 155
CsiI ACCWGGT 1 cut(s) 208
Csp6I GTAC 1 cut(s) 373
CviAII CATG 2 cut(s) 322, 368
CviJI RGCY 5 cut(s) 114, 169, 244, 301, 332
CviKI_1 RGCY 5 cut(s) 114, 169, 244, 301, 332
CviQI GTAC 1 cut(s) 373
DpnI GATC 5 cut(s) 51, 62, 217, 261, 317
DpnII GATC 5 cut(s) 49, 60, 215, 259, 315
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 155
Eco47III AGCGCT 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 118, 208, 426
EcoT14I CCWWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 2 cut(s) 325, 371
FaiI YATR 8 cut(s) 48, 95, 180, 323, 340, 342, 369, 440
FatI CATG 2 cut(s) 321, 367
FauI CCCGC 2 cut(s) 138, 310
Fnu4HI GCNGC 3 cut(s) 108, 167, 273
FokI GGATG 2 cut(s) 200, 359
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 108, 167, 273
FspBI CTAG 1 cut(s) 276
GlaI GCGC 2 cut(s) 106, 130
GluI GCNGC 3 cut(s) 108, 167, 273
GsaI CCCAGC 1 cut(s) 142
HaeII RGCGCY 2 cut(s) 108, 132
HaeIII GGCC 1 cut(s) 169
HhaI GCGC 2 cut(s) 107, 131
Hin1II CATG 2 cut(s) 325, 371
Hin6I GCGC 2 cut(s) 105, 129
HinP1I GCGC 2 cut(s) 105, 129
HinfI GANTC 1 cut(s) 413
HphI GGTGA 2 cut(s) 19, 108
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 54, 424
Hpy188III TCNNGA 2 cut(s) 99, 158
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 178, 374
HpyCH4V TGCA 2 cut(s) 310, 338
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 120, 135, 272, 307
Hsp92II CATG 2 cut(s) 325, 371
HspAI GCGC 2 cut(s) 105, 129
KpnI GGTACC 1 cut(s) 376
Kzo9I GATC 5 cut(s) 49, 60, 215, 259, 315
LpnPI CCDG 9 cut(s) 96, 105, 124, 132, 171, 195, 222, 413, 440
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 337
MabI ACCWGGT 1 cut(s) 208
MaeI CTAG 1 cut(s) 276
MalI GATC 5 cut(s) 51, 62, 217, 261, 317
MbiI CCGCTC 1 cut(s) 305
MboI GATC 5 cut(s) 49, 60, 215, 259, 315
MboII GAAGA 2 cut(s) 203, 422
MflI RGATCY 2 cut(s) 259, 315
MhlI GDGCHC 2 cut(s) 227, 246
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 6 cut(s) 3, 101, 250, 256, 272, 275
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 2 cut(s) 296, 354
MspR9I CCNGG 3 cut(s) 120, 210, 428
Mva1269I GAATGC 1 cut(s) 384
MvaI CCWGG 3 cut(s) 120, 210, 428
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 5 cut(s) 111, 120, 135, 272, 307
NcoI CCATGG 1 cut(s) 367
NdeII GATC 5 cut(s) 49, 60, 215, 259, 315
NlaIII CATG 2 cut(s) 325, 371
NlaIV GGNNCC 1 cut(s) 374
PctI GAATGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 3 cut(s) 109, 168, 274
PsiI TTATAA 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 118, 208, 426
PspFI CCCAGC 1 cut(s) 138
PspGI CCWGG 3 cut(s) 118, 208, 426
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 2 cut(s) 259, 315
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 296, 354
SatI GCNGC 3 cut(s) 108, 167, 273
Sau3AI GATC 5 cut(s) 49, 60, 215, 259, 315
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 3 cut(s) 120, 210, 428
SduI GDGCHC 2 cut(s) 227, 246
SetI ASST 5 cut(s) 9, 116, 121, 211, 334
SexAI ACCWGGT 1 cut(s) 208
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 155
SsiI CCGC 4 cut(s) 108, 145, 166, 303
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 3 cut(s) 118, 208, 426
StyI CCWWGG 1 cut(s) 367
TaqI TCGA 1 cut(s) 43
TauI GCSGC 2 cut(s) 110, 169
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 296, 354
Tru9I TTAA 2 cut(s) 296, 354
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 17, 204
TspGWI ACGGA 2 cut(s) 60, 328
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.