MD13G1200900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0006160
Physical Location & Seq
Reverse (-)
17923075 .. 17923404
330 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1200900.v1.1.491

Sequence Viewer

Length: 330 bp
ATGAAAGACGTTAACGGCACCACAGAAATGAAGGTCCGGGTGGTGTGTTGGAAAGTGTATGATTACATTTGTTATGATCTAAAAGAGATTGCATTTCCATCTTCGCTGCCAGACCCTCCTCATATCAAGAAGCAGCATCAGCTCACCATGCGGGAGTGGTTTTTGGTGTTGAATGAGGCTTCTAGGCTTTATGCTGCCAACTGGGTGCAGGATGTTGGTCCTGAACTGCGACCTAATGATTATAAGAATAAAGAAAGTGAAGATGAACCTGGTGGAGCACAGAGAACGGCTAAAGAGAAAGAACCCTCAACCTTAGAGGATCTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.64

Weight (kDa)

5.18

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 17
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 327
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 1 cut(s) 327
ApeKI GCWGC 3 cut(s) 106, 133, 194
AspS9I GGNCC 2 cut(s) 34, 218
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 2 cut(s) 34, 218
BanI GGYRCC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 3 cut(s) 93, 145, 181
BccI CCATC 1 cut(s) 106
BceAI ACGGC 2 cut(s) 31, 303
BciT130I CCWGG 1 cut(s) 270
BcnI CCSGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 183
BisI GCNGC 3 cut(s) 107, 134, 195
BlsI GCNGC 3 cut(s) 108, 135, 196
Bme1390I CCNGG 2 cut(s) 38, 270
Bme18I GGWCC 2 cut(s) 34, 218
BmgT120I GGNCC 2 cut(s) 34, 218
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 38, 270
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 93, 145, 181
BsgI GTGCAG 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 76, 319
BspACI CCGC 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 206
BssMI GATC 2 cut(s) 76, 319
Bst2UI CCWGG 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 79, 322
BstMBI GATC 2 cut(s) 76, 319
BstMWI GCNNNNNNNGC 2 cut(s) 139, 148
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 36, 268
BstV1I GCAGC 3 cut(s) 93, 145, 181
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtsCI GGATG 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 34, 218
CsiI ACCWGGT 1 cut(s) 268
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 142, 179, 187, 290
CviKI_1 RGCY 4 cut(s) 142, 179, 187, 290
DdeI CTNAG 1 cut(s) 313
DpnI GATC 2 cut(s) 78, 321
DpnII GATC 2 cut(s) 76, 319
Eco47I GGWCC 2 cut(s) 34, 218
EcoRII CCWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 151
FaiI YATR 6 cut(s) 60, 75, 123, 149, 192, 243
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 107, 134, 195
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 107, 134, 195
FspBI CTAG 1 cut(s) 183
GluI GCNGC 3 cut(s) 107, 134, 195
HapII CCGG 1 cut(s) 37
Hin1II CATG 1 cut(s) 151
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HpaI GTTAAC 1 cut(s) 13
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 127, 221
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 92, 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 148
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 151
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 76, 319
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 7 cut(s) 50, 123, 187, 194, 234, 255, 282
Lsp1109I GCAGC 3 cut(s) 93, 145, 181
LweI GCATC 1 cut(s) 145
MabI ACCWGGT 1 cut(s) 268
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 9
MalI GATC 2 cut(s) 78, 321
MboI GATC 2 cut(s) 76, 319
MboII GAAGA 2 cut(s) 93, 272
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 5 cut(s) 126, 129, 169, 310, 316
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 38, 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 139, 148
NciI CCSGG 1 cut(s) 38
NdeII GATC 2 cut(s) 76, 319
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 108, 135, 196
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 34, 218
PsuI RGATCY 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 107, 134, 195
Sau3AI GATC 2 cut(s) 76, 319
Sau96I GGNCC 2 cut(s) 34, 218
ScrFI CCNGG 2 cut(s) 38, 270
SduI GDGCHC 1 cut(s) 280
SetI ASST 6 cut(s) 12, 36, 144, 235, 271, 314
SexAI ACCWGGT 1 cut(s) 268
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 2 cut(s) 34, 218
SmiMI CAYNNNNRTG 1 cut(s) 26
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 36, 268
TaiI ACGT 1 cut(s) 12
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseI GCWGC 3 cut(s) 106, 133, 194
TspDTI ATGAA 3 cut(s) 17, 44, 279
VpaK11BI GGWCC 2 cut(s) 34, 218
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.